KEGG   Oryzias melastigma (Indian medaka): 112158272
Entry
112158272         CDS       T07439                                 
Name
(RefSeq) flap endonuclease GEN homolog 1
  KO
K15338  holliday junction resolvase GEN1/YEN1 [EC:3.1.-.-]
Organism
oml  Oryzias melastigma (Indian medaka)
Brite
KEGG Orthology (KO) [BR:oml00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:oml03400]
    112158272
DNA repair and recombination proteins [BR:oml03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    Other HR factors
     112158272
SSDB
Motif
Pfam: XPG_I Chromo_2 XPG_N
Other DBs
NCBI-GeneID: 112158272
NCBI-ProteinID: XP_024147302
Ensembl: ENSOMEG00000010515
UniProt: A0A3B3DCK8
LinkDB
Position
LG24:complement(9727151..9732697)
AA seq 852 aa
MGVHDLWSIIEPVRESVSLYSLSGKTLAVDLSLWVCEAQHVQAMMGRVTKPHLRNLFFRV
SSLTLMGIKLVFVMEGTAPRLKSETMSKRTEARYGRVKNSTESSTNTSRGRFNSILKECA
EMLDYLGVPWVTAAGEAEAMCAYLDSQGLVDGCITNDGDAFLYGARTVYRNFNMSSKDPQ
IDCYHTSRVQTELHLSRENLVGLAILLGCDYIPKGIPGVGREQALRLIQALKGQSLLHRF
IQWREDNTTMSDVVVKKVPHCNICRHPGSAKAHERRGCTLCNSQQYCQPQDFDYLCPCDW
HSYEHTHQAAAFEANIKKKTLSNPQFPFTEIINEFLVSKDKPVSHFKRRQPNMLMMQKFA
YDKMEWPKHYTSEKVLVLMTYAELMNRKYGIDASSQIKPIRIVKSRVRNAVACFEVIWRT
PEHFVFPEDRPAEDPLEVRTVEEESLFRLAFPELVDSFTRSKALVQETKKKRQKKKEKPF
DTVTDLLAKMTLYGSSTQPESLPPSSSNYSQTEVLVLDSPVCNKQLHEEKEDHNNPLVAS
ASEDAASPSVSVVIGALHLSDIDWDASSFTSSPAPQANNATKAEGKTTVKDERREEKAGQ
EVSDSVKKQEESGSALDLCYTDCSLRDRLLKKNSSKSLTEKEISKFSSVKLDFSENNSKL
RGIISEEESTSEDKDQFALKVSKEHNQQQIVAQVQHKTAENDKLCRKREQTALISSQRCN
SYPSKSDKKSSKNLQTSKKSVCMSLCSSSEESDVENDNRKHQIRTKTVPNKMKSNFLLEL
PLKSVPTNKLHRETLNEEVKPLESKNQDTRVPETDGVFVQSPGSPVIVLDDSVTCSDSPL
PLAERLRLKFLK
NT seq 2559 nt   +upstreamnt  +downstreamnt
atgggggttcacgatttgtggtcgataattgagccggttcgcgagtcggtgtccctgtac
agtttaagcggaaagactcttgcagtcgacctcagtctgtgggtttgtgaggcccagcac
gtccaggcgatgatggggagagttacaaagccccacttgaggaatttatttttccgggtg
tcctccctcactctgatggggatcaagcttgtttttgtgatggaaggaacagctcccaga
cttaaatctgaaaccatgagtaagaggacagaagcaagatacggacgcgttaaaaactcc
acagagagtagcacaaacaccagcagagggcgctttaactccattctcaaagagtgtgca
gagatgttggattacttaggggtcccttgggtgacggctgcaggggaggctgaggccatg
tgtgcgtatctggattctcagggcctggtggatggctgcatcacaaatgatggagatgct
ttcttgtacggtgcccgaacagtctacaggaactttaatatgagcagtaaagaccctcag
atcgactgttatcacacatccagagtgcaaacagagctgcatctgagcagagagaatctt
gttggtttagccattctcctgggctgtgattacattcctaagggcattccaggtgttggg
agagagcaggccttgaggttaatacaggcactgaaaggacagtcattgttgcacaggttc
attcagtggagagaggacaacactactatgtcggatgtggttgtaaaaaaggttcctcac
tgcaacatatgtcgccatcctggctcagccaaagcacatgagcgaagaggctgcactctc
tgcaacagtcaacaatactgtcaacctcaagactttgattacctgtgtccttgtgactgg
cacagctatgagcacacgcatcaggctgcagcttttgaagcaaacatcaagaaaaaaaca
ctcagcaatccgcagtttccttttacagagatcatcaacgagtttctggtttccaaggat
aaacctgtatcacatttcaagaggagacaaccaaatatgctaatgatgcagaaatttgct
tatgacaagatggagtggccaaagcattacaccagtgaaaaggttttggtgttgatgacc
tacgctgagctgatgaatcgaaaatatgggattgatgcgtcctctcaaatcaagcccatc
cgaatagtgaaatcaagagtgaggaacgctgtggcttgtttcgaagtcatctggagaact
ccagaacattttgtgtttccggaggaccgacctgcagaggatccacttgaagtgaggaca
gtagaagaagaatccctctttcgtttggccttccctgagcttgtggacagcttcacgagg
agcaaagctctggtccaagaaaccaaaaaaaaaagacagaagaaaaaggagaagcctttc
gatactgttacagatcttttggcaaagatgaccctctacggctcttccacacaacctgaa
tctctgcctcctagcagctcaaactacagccagacagaagtgcttgttttagacagtccg
gtgtgcaataagcagcttcacgaggaaaaagaagaccacaacaatcccctggttgcctca
gcttcagaggatgctgcttcaccatctgtttctgttgttattggcgctttacatttgagt
gatatagactgggatgcttcttcttttacatcctcccctgcgccacaagcaaataacgcc
actaaagctgagggaaagaccacagtcaaggatgaaagacgagaggaaaaggcagggcag
gaagtctcggacagtgttaagaagcaggaagagtccggatcagctctggatctgtgttac
accgactgttccctgagggatcgactgctcaagaagaactccagcaaaagtttgaccgag
aaagagatctcaaagttctcaagcgttaagttagacttttctgaaaacaattcaaaactc
agagggattatctctgaggaggaatcaacttctgaggacaaagatcagtttgcattaaaa
gtgtcaaaggaacacaaccaacaacaaattgttgcacaagttcagcacaaaaccgcagaa
aatgacaaactctgcagaaagcgtgaacagactgctctgatatcatcacaaaggtgcaac
tcttatccgagtaaaagtgacaaaaagagctcaaaaaacctacaaacctccaagaagagt
gtatgcatgagtttgtgttcatccagtgaggaaagtgatgtagaaaatgacaatcgtaag
catcaaatacgcacaaaaactgtaccaaacaagatgaagagtaactttcttttagaactt
cccttaaaatctgtgcctacaaacaagttacacagagaaactcttaatgaagaggtcaaa
cccttagaatctaaaaatcaggacacccgtgtgcctgaaactgatggtgtgtttgtgcag
tctccaggctcacctgtgattgtgttagatgactctgtcacttgtagcgacagtccactg
ccgctcgccgagagactgaggctcaaattcctgaagtga

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