Oryzias melastigma (Indian medaka): 112158272
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Entry
112158272 CDS
T07439
Name
(RefSeq) flap endonuclease GEN homolog 1
KO
K15338
holliday junction resolvase GEN1/YEN1 [EC:3.1.-.-]
Organism
oml
Oryzias melastigma (Indian medaka)
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
oml03400
]
112158272
DNA repair and recombination proteins [BR:
oml03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
112158272
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XPG_I
Chromo_2
XPG_N
Motif
Other DBs
NCBI-GeneID:
112158272
NCBI-ProteinID:
XP_024147302
Ensembl:
ENSOMEG00000010515
UniProt:
A0A3B3DCK8
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Position
LG24:complement(9727151..9732697)
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AA seq
852 aa
AA seq
DB search
MGVHDLWSIIEPVRESVSLYSLSGKTLAVDLSLWVCEAQHVQAMMGRVTKPHLRNLFFRV
SSLTLMGIKLVFVMEGTAPRLKSETMSKRTEARYGRVKNSTESSTNTSRGRFNSILKECA
EMLDYLGVPWVTAAGEAEAMCAYLDSQGLVDGCITNDGDAFLYGARTVYRNFNMSSKDPQ
IDCYHTSRVQTELHLSRENLVGLAILLGCDYIPKGIPGVGREQALRLIQALKGQSLLHRF
IQWREDNTTMSDVVVKKVPHCNICRHPGSAKAHERRGCTLCNSQQYCQPQDFDYLCPCDW
HSYEHTHQAAAFEANIKKKTLSNPQFPFTEIINEFLVSKDKPVSHFKRRQPNMLMMQKFA
YDKMEWPKHYTSEKVLVLMTYAELMNRKYGIDASSQIKPIRIVKSRVRNAVACFEVIWRT
PEHFVFPEDRPAEDPLEVRTVEEESLFRLAFPELVDSFTRSKALVQETKKKRQKKKEKPF
DTVTDLLAKMTLYGSSTQPESLPPSSSNYSQTEVLVLDSPVCNKQLHEEKEDHNNPLVAS
ASEDAASPSVSVVIGALHLSDIDWDASSFTSSPAPQANNATKAEGKTTVKDERREEKAGQ
EVSDSVKKQEESGSALDLCYTDCSLRDRLLKKNSSKSLTEKEISKFSSVKLDFSENNSKL
RGIISEEESTSEDKDQFALKVSKEHNQQQIVAQVQHKTAENDKLCRKREQTALISSQRCN
SYPSKSDKKSSKNLQTSKKSVCMSLCSSSEESDVENDNRKHQIRTKTVPNKMKSNFLLEL
PLKSVPTNKLHRETLNEEVKPLESKNQDTRVPETDGVFVQSPGSPVIVLDDSVTCSDSPL
PLAERLRLKFLK
NT seq
2559 nt
NT seq
+upstream
nt +downstream
nt
atgggggttcacgatttgtggtcgataattgagccggttcgcgagtcggtgtccctgtac
agtttaagcggaaagactcttgcagtcgacctcagtctgtgggtttgtgaggcccagcac
gtccaggcgatgatggggagagttacaaagccccacttgaggaatttatttttccgggtg
tcctccctcactctgatggggatcaagcttgtttttgtgatggaaggaacagctcccaga
cttaaatctgaaaccatgagtaagaggacagaagcaagatacggacgcgttaaaaactcc
acagagagtagcacaaacaccagcagagggcgctttaactccattctcaaagagtgtgca
gagatgttggattacttaggggtcccttgggtgacggctgcaggggaggctgaggccatg
tgtgcgtatctggattctcagggcctggtggatggctgcatcacaaatgatggagatgct
ttcttgtacggtgcccgaacagtctacaggaactttaatatgagcagtaaagaccctcag
atcgactgttatcacacatccagagtgcaaacagagctgcatctgagcagagagaatctt
gttggtttagccattctcctgggctgtgattacattcctaagggcattccaggtgttggg
agagagcaggccttgaggttaatacaggcactgaaaggacagtcattgttgcacaggttc
attcagtggagagaggacaacactactatgtcggatgtggttgtaaaaaaggttcctcac
tgcaacatatgtcgccatcctggctcagccaaagcacatgagcgaagaggctgcactctc
tgcaacagtcaacaatactgtcaacctcaagactttgattacctgtgtccttgtgactgg
cacagctatgagcacacgcatcaggctgcagcttttgaagcaaacatcaagaaaaaaaca
ctcagcaatccgcagtttccttttacagagatcatcaacgagtttctggtttccaaggat
aaacctgtatcacatttcaagaggagacaaccaaatatgctaatgatgcagaaatttgct
tatgacaagatggagtggccaaagcattacaccagtgaaaaggttttggtgttgatgacc
tacgctgagctgatgaatcgaaaatatgggattgatgcgtcctctcaaatcaagcccatc
cgaatagtgaaatcaagagtgaggaacgctgtggcttgtttcgaagtcatctggagaact
ccagaacattttgtgtttccggaggaccgacctgcagaggatccacttgaagtgaggaca
gtagaagaagaatccctctttcgtttggccttccctgagcttgtggacagcttcacgagg
agcaaagctctggtccaagaaaccaaaaaaaaaagacagaagaaaaaggagaagcctttc
gatactgttacagatcttttggcaaagatgaccctctacggctcttccacacaacctgaa
tctctgcctcctagcagctcaaactacagccagacagaagtgcttgttttagacagtccg
gtgtgcaataagcagcttcacgaggaaaaagaagaccacaacaatcccctggttgcctca
gcttcagaggatgctgcttcaccatctgtttctgttgttattggcgctttacatttgagt
gatatagactgggatgcttcttcttttacatcctcccctgcgccacaagcaaataacgcc
actaaagctgagggaaagaccacagtcaaggatgaaagacgagaggaaaaggcagggcag
gaagtctcggacagtgttaagaagcaggaagagtccggatcagctctggatctgtgttac
accgactgttccctgagggatcgactgctcaagaagaactccagcaaaagtttgaccgag
aaagagatctcaaagttctcaagcgttaagttagacttttctgaaaacaattcaaaactc
agagggattatctctgaggaggaatcaacttctgaggacaaagatcagtttgcattaaaa
gtgtcaaaggaacacaaccaacaacaaattgttgcacaagttcagcacaaaaccgcagaa
aatgacaaactctgcagaaagcgtgaacagactgctctgatatcatcacaaaggtgcaac
tcttatccgagtaaaagtgacaaaaagagctcaaaaaacctacaaacctccaagaagagt
gtatgcatgagtttgtgttcatccagtgaggaaagtgatgtagaaaatgacaatcgtaag
catcaaatacgcacaaaaactgtaccaaacaagatgaagagtaactttcttttagaactt
cccttaaaatctgtgcctacaaacaagttacacagagaaactcttaatgaagaggtcaaa
cccttagaatctaaaaatcaggacacccgtgtgcctgaaactgatggtgtgtttgtgcag
tctccaggctcacctgtgattgtgttagatgactctgtcacttgtagcgacagtccactg
ccgctcgccgagagactgaggctcaaattcctgaagtga
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