Oryzias melastigma (Indian medaka): 112158309
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Entry
112158309 CDS
T07439
Symbol
parp1
Name
(RefSeq) poly [ADP-ribose] polymerase 1
KO
K24070
poly [ADP-ribose] polymerase 1 [EC:
2.4.2.30
]
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml03410
Base excision repair
oml04210
Apoptosis
oml04217
Necroptosis
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
112158309 (parp1)
09140 Cellular Processes
09143 Cell growth and death
04210 Apoptosis
112158309 (parp1)
04217 Necroptosis
112158309 (parp1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
oml03032
]
112158309 (parp1)
03036 Chromosome and associated proteins [BR:
oml03036
]
112158309 (parp1)
03400 DNA repair and recombination proteins [BR:
oml03400
]
112158309 (parp1)
Enzymes [BR:
oml01000
]
2. Transferases
2.4 Glycosyltransferases
2.4.2 Pentosyltransferases
2.4.2.30 NAD+ ADP-ribosyltransferase
112158309 (parp1)
DNA replication proteins [BR:
oml03032
]
Eukaryotic type
DNA Replication Termination Factors
Other termination factors
112158309 (parp1)
Chromosome and associated proteins [BR:
oml03036
]
Eukaryotic type
Centrosome formation proteins
Centriole proteins
112158309 (parp1)
DNA repair and recombination proteins [BR:
oml03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Other BER factors
112158309 (parp1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PARP
PARP_reg
zf-PARP
PADR1_N
WGR
Zn_ribbon_PADR1
BRCT
BRCT_2
Motif
Other DBs
NCBI-GeneID:
112158309
NCBI-ProteinID:
XP_024147365
LinkDB
All DBs
Position
LG24:7983921..7999812
Genome browser
AA seq
1015 aa
AA seq
DB search
MADSQNDKLFRAEYAKSGQASCKKCKEKIAKESLRMAIVVQSPMFDGKVPHWHHFSCFWQ
RASVQSTADVGGFSDLRWADQEAVKKAIESGGVAGTGKGNSGSAAKGEKTLNDFAVEYAK
SNRSTCKGCQQKIEKDQIRVSKKVVDPEKPQLGLIDRWYHTACFVSSREELAFKPNYSAA
QLKGFNALRAEDKEELKKRLPAVKTEGKRPGDELDGVSKKLKQEEEEENKKLVENLKNQS
QLIWGIKDKLRKHCSTNDMKELLIANGQDVPSGESNVVDRVADGMAFGALEACKECQGQL
VFKGDAYYCTGDISAWTKCVFKTTTPPRKDWIIPKEFHEVPFLKKFKFKRQDRVYPKEAP
TQTVTTAKGEPLPSGSGALKEPLPEGAPSDKPLTGMKLLAVGKLSKNKEELKAEVEEMGG
KITGTANKASLCLSTKKEVEKMGKKMEEIRDAGVRVVSEDFLRDIKSSDKALQELVSLHA
ISTWGAEVKVEPQAPAPASKSGALAAKSTGRVTEEEGGSKSKKMKLTVKGGAAVDPDSGL
ENSAHVLEQSGKMYSATLGLVDIVRGTNSYYKLQLLEDDLHKRYWVFRSWGRVGTTIGGN
KLDKFHDKNSALDNFLTVYKEKTGNEWGSSNFIKYPTKFYPLEIDYGQDEEAVKRLTASA
GTKSKLAKPVQELIKMIFDVESMKKAMVEFEIDLQKMPLGKLSKRQIQSAYALLTEVQQA
VSDCVPEAQILDLSNRFYTLIPHDFGMKKPPLLNSLDYIQAKVEMLDNLLDIEVAYSLLR
GGAQDNEHDPIDINYEKLKTKIEVVDKSSQEAEVITQYVKNTHAATHNTYTLEVQEIFKI
GREGERQRFRPFEELHNRQLLWHGSRTTNYAGIMSQGLRIAPPEAPVTGYMFGKGVYFAD
MVSKSANYCHTSQSDPVGLILLAEVALGNMHELKKASHITKLPKGKHSVKGLGRTAPDPN
ATVTLDGVQVPLGKGVQTNIDDTSLLYNEYIVYDVAQVNMKYLLKIKFNYQTSLW
NT seq
3048 nt
NT seq
+upstream
nt +downstream
nt
atggccgactcccagaatgacaagttgttccgggcagagtacgccaaaagcggccaagct
tcgtgcaagaaatgcaaggagaaaatcgcgaaggagtcgctgaggatggccatcgtggtg
cagtcccccatgttcgatggaaaggtcccacactggcaccacttctcctgcttctggcag
cgagcctcggtgcagtccacggccgacgtgggcggcttttcggacctccgctgggcggac
caggaagctgtcaaaaaagccatagagagtggtggagtggccggaacaggaaaaggaaac
tcggggagtgcggccaaaggagaaaagacgctgaatgactttgcggtggagtacgccaaa
tcgaaccgcagcacgtgcaaaggatgtcagcagaaaatagaaaaggatcagattcgcgtg
tctaagaaagtggtggaccccgagaagcctcagctgggcctgatcgaccgctggtaccac
accgcgtgtttcgtgagcagcagagaggagctggctttcaaacccaactacagcgctgca
cagctgaagggattcaatgcgctgcgggcggaggacaaggaggagctgaagaagaggctt
cctgctgtaaaaactgagggaaaacgtccaggtgacgagttggacggcgtttcaaagaag
ctgaagcaagaagaggaggaggagaataaaaagctggtggagaatctaaagaatcaaagc
cagctaatttgggggattaaggacaaactcaggaaacactgctcaaccaacgacatgaag
gagctgctgatcgcaaacggtcaggacgttccttccggagagtccaacgtggtcgacaga
gtggcggacgggatggcgttcggagctctggaggcctgtaaggagtgccaaggtcagctt
gtgtttaaaggggatgcgtattactgtacaggagacatttccgcctggactaagtgtgtg
ttcaaaacgacgacgcccccacgtaaagattggatcatcccaaaggagttccatgaagtt
ccctttttgaaaaagttcaagttcaagcgtcaagaccgagtttatcccaaagaagctccg
acccaaacagtgacgacagccaaaggtgaacctctgccgagtggatctggagctctgaag
gagccgctgccagaaggagcaccttcagataaacctttgaccggaatgaaactgctggct
gttggaaaactgtctaagaacaaggaggagctgaaggccgaagtggaggaaatgggtgga
aagatcaccggcacagccaacaaggcgtctctctgcctcagcactaaaaaggaagtagag
aaaatgggaaaaaagatggaggaaattcgggacgcaggagtgcgcgtagtctccgaggac
ttcctccgggacatcaagtcttccgacaaagctctccaggagctggtctctctgcacgcc
atctcaacgtggggcgccgaggttaaagtagagccccaggcgcccgctccagcctccaag
tctggagctcttgctgccaagagcactggtagagtgacggaggaagaaggtggcagcaaa
tccaagaaaatgaagctgacggttaaaggtggagctgccgtggacccagactcaggtctg
gaaaacagcgctcacgtcctggaacagagcgggaagatgtacagcgccactctgggcctg
gtggacatcgtcagaggaactaactcctactataagctgcagctgcttgaggacgacctg
cataaaaggtactgggtgttccggtcgtggggccgagtgggcaccaccatcggaggaaac
aaactggacaaattccacgacaagaactcggctctggataatttccttaccgtttataag
gaaaagacgggaaacgaatggggctcgtctaactttatcaaatatcccactaagttctac
cctctggagatcgactatggacaggatgaggaagccgtgaagagactgacggcctctgcc
ggcaccaaatccaagcttgccaaacccgttcaggagctgattaagatgatctttgatgtg
gagagcatgaagaaggccatggtggagtttgaaatcgacctccagaaaatgcctctgggc
aagctgagtaagagacaaatccagagcgcctacgctctcctcactgaagtccagcaggct
gtgtcagactgcgtgcccgaagcacagatcctggatctctccaaccgtttctacacactc
atacctcacgactttggcatgaaaaagcctccactactcaacagcttggattacattcaa
gctaaagtggagatgttggacaacctgttggacatcgaagtggcttacagtctgctgaga
ggaggagctcaggacaacgaacacgatcccatcgatatcaactacgagaaactcaaaacc
aagatcgaggttgttgacaagtcatcccaggaggcggaggtcatcacccagtatgtgaag
aacacccatgctgctacgcacaacacatacactctggaagtacaagagattttcaaaatt
ggccgagaaggagagcgccaacgcttccgacccttcgaggagcttcacaacagacagttg
ttgtggcacggctctcgcacaacaaactacgccggcatcatgtctcagggtctccgcatt
gctcctcctgaagctccagtgaccggttacatgttcggtaaaggtgtgtacttcgccgac
atggtgtccaagagtgcaaactactgtcacacctcgcagtcggatcccgtcggcctcata
ctgctggcagaggtggcgttaggaaacatgcatgagctgaagaaagccagtcacatcaca
aaattgccaaaaggaaagcacagtgttaaaggtctgggtagaaccgctcctgatccaaat
gcgactgtcactttggacggagtgcaagtgcctctgggaaaaggagtccaaacaaacata
gatgatacaagcctactgtacaacgaatacatcgtgtatgatgtagcgcaggtcaacatg
aagtatcttttgaagatcaagtttaactaccagacatccttgtggtga
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