Oryzias melastigma (Indian medaka): 112158550
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Entry
112158550 CDS
T07439
Name
(RefSeq) E3 ubiquitin-protein ligase TRIM39 isoform X2
Organism
oml
Oryzias melastigma (Indian medaka)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SPRY
zf-RING_UBOX
zf-C3HC4
zf-C3HC4_2
zf-C3HC4_4
zf-B_box
zf-RING_2
zf-C3HC4_3
zf-RING_5
zf-RING_6
zf-Nse
U-box
Prok-RING_4
Motif
Other DBs
NCBI-GeneID:
112158550
NCBI-ProteinID:
XP_024147771
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Position
LG23:complement(12256767..12260752)
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AA seq
595 aa
AA seq
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MASTTKLISEEQFLCSICQEVFKEPVSTRCGHNFCKSCITEYWDSTCQIQCPLCRTKFYR
RPKFFVNTEFRDMVEHFRHMKVIKGKAEGEIAKPGDVPCDVCTETKMKAHKTCVVCLASY
CQTHLELHQNLKAHKLVSPLSNLWDKVCKKHDKMLELFCCTDQKCVCLICWKDGHADHDV
ILLEKASQEKKALLAKSVSEMKIIDNQKTVEVNKLKASFQQTKKESMSDLADVEMALTSL
VADVQEHKRKVIELIQQKQKRADAKGDAFFAQVVQESVEMRKKIHKLEQLLQTDDHLHFL
LNYPSYYQTAKSTQPNPTKPFEDKRPIYKGMVKKSTAQMRKTLSSQIEGLLYQVSSEDCE
GEGGNTTMPEVWIPPQDELMMIQQCNAVDLTLNAFGAHPSLMVSSDGKHLSLRNGRFVLS
SFFGARIEHLPIAYSTNFFSSGRFYYEVQVNRSQNFFLGVAKESMKVNPPFIPSPEDGVW
IFRHTFGRYHTNGRHPDLILRQAPNVIGVFVDYEKGEVSFYDVEGRYVMFSFRECYFAER
ASFFTALLYSMTGMSEITRPKLYPIFGVFDDGSDPSLTITPVNFTVEDASFVEGN
NT seq
1788 nt
NT seq
+upstream
nt +downstream
nt
atggcatcaactaccaaactcatttctgaggagcaatttctatgctccatttgtcaggag
gtgttcaaggaaccagtctcaactcgatgtggacacaacttctgtaagagctgcatcaca
gaatactgggacagcacctgccaaattcagtgtcccttgtgcaggacaaagttttataga
aggccaaaatttttcgtgaacacagagttcagagacatggtggagcatttcagacacatg
aaagtgataaaagggaaggctgaaggtgagattgctaaaccaggagacgttccctgtgat
gtctgcacggaaacaaaaatgaaagcccacaagacgtgtgtggtgtgtttggcttcatac
tgccagactcacctggaacttcaccagaacctgaaggcgcacaagctggtcagtccattg
tcaaacctgtgggacaaagtgtgtaaaaaacacgacaagatgctggagctcttctgctgc
acagatcaaaagtgcgtctgcttgatttgctggaaagatggccatgcagatcatgatgtc
atccttcttgagaaagcttcccaagaaaaaaaggccttgcttgcaaaaagtgtttcagaa
atgaagataattgataaccaaaaaactgtggaagtcaacaaactgaaagcttcgtttcaa
cagaccaagaaggagtccatgagtgatttggcagacgttgaaatggctttgactagtctg
gtggctgatgtgcaagaacataagagaaaggtgattgaactgattcagcaaaagcagaaa
cgagcagacgcaaaaggcgatgcgttttttgcacaggtggttcaagaatctgtcgagatg
aggaagaaaatacataaactggagcagcttctgcaaactgacgaccatctccacttttta
ctgaattatccaagctattaccaaactgcaaagtcaacccagcccaatcctacaaagcct
tttgaagataaacgcccaatttataaagggatggtgaaaaaatccactgctcagatgagg
aagacactaagtagtcaaatagaaggacttctttatcaggtttcatctgaggactgtgag
ggagagggagggaacaccacaatgcctgaagtatggattcctccccaggatgagctgatg
atgatccaacaatgtaatgctgtggatctgactttaaatgcctttggtgcccaccccagt
ctcatggtgtctagtgatggcaaacacttgtcattgcgcaatggtcgttttgttttatcc
tctttttttggtgcaagaatagaacatctgcccattgcttattcaacaaactttttttcc
tctggtagattttattatgaagttcaagtcaataggagccaaaactttttcttgggagtg
gctaaagagtcaatgaaagtaaaccctccttttattccatcccctgaggatggagtctgg
attttccgtcacacatttggcagatatcacactaatggaagacatccagacctaatttta
agacaggcacccaatgtgattggtgtgtttgtcgattatgagaaaggggaggtctccttc
tacgatgtagagggcaggtatgtgatgttctctttcagagaatgctactttgctgagagg
gcttcattcttcacagctctcctttactccatgactggaatgtcagagattaccagacca
aaactctaccccatttttggagtttttgatgatggttcagatcccagcctcacaatcact
cctgtaaacttcacggtggaggatgccagttttgtcgagggaaattga
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