Oryzias melastigma (Indian medaka): 112158832
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Entry
112158832 CDS
T07439
Symbol
ube4b
Name
(RefSeq) ubiquitin conjugation factor E4 B
KO
K10597
ubiquitin conjugation factor E4 B [EC:
2.3.2.27
]
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml04120
Ubiquitin mediated proteolysis
oml04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
112158832 (ube4b)
04120 Ubiquitin mediated proteolysis
112158832 (ube4b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
oml04121
]
112158832 (ube4b)
Enzymes [BR:
oml01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
112158832 (ube4b)
Ubiquitin system [BR:
oml04121
]
Ubiquitin ligases (E3)
U-box type E3
112158832 (ube4b)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ufd2P_core
U-box
Motif
Other DBs
NCBI-GeneID:
112158832
NCBI-ProteinID:
XP_024148208
Ensembl:
ENSOMEG00000003006
UniProt:
A0A3B3CYX4
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Position
LG7:complement(6024682..6042351)
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AA seq
1184 aa
AA seq
DB search
MEELSADEIRRRRLARLAGGQTSQPSTPLSTPLTSPQRETPPGSLPGPSGAALQPVPPAA
SQSLGLNVHSGTPATSPMGNSGVVYGSQSSEGVSSLSSSPSNSLETQSQSLSRSQSMDID
PASCEKSMSQVDVDSGIENMEVDDGDRREKRNLTEKETCSTSDVTEEQALHLICKILRVS
WKEQGRDVIFLPSLAAEFHQNSKEVYSDFKDLIGQILMEVLMMSSQSRLHNPFASLTATS
QPIAAAKSNDHRLTLVQPSSQGSSPIGPSAGSFGASSLSSLGACGGGASCDSGSDRFTIE
ACKETEMLNYLIERFDSVGMEEKKAPKMCSQPNVSQLLSNIRSQCISHVALVLQGTLTQP
RSPLQPSLLVPYMLCRNLPYGFIQELVRITYQEEELFKQIFIPIIHGLALAMKECSFDHD
NFKFPLMALSELCEIKFGKCHPVCSLVTSLPLWCLKPLSPGCGREIQKLSYLGAFFSLSV
FAEDDAKVADKYFSGPAITMENTRVVSQSLQHYLESARGDMFKILHNILLNGETRELALN
YMAALVNNNVKKAQMQTDDKLVSTDGFMLNVLWVLQQLSMKIKLETVDPNYIFHPRCRLA
VSVKETRLKATMEELKSWLAELHEDPIKFPDPKFPTECFFLTLHAHHLSILPCCRRYIRR
LRAIRELNRTVEELKNSENQWKDSPLANRHREMLKRCKAQLKKLVRAKACADVGLLDENL
LRRCLQFYSTVIQLILHMVDPAYPNVSLPLNPEIPKSFAALPEFYIEDVAEFLLFVVQYA
PQVLYEPCIQDIVTFLVVFICSQNYIRNPYLIAKLVEVLFVTNPAVQPRTQRFSEMMENH
PLSIKQLVPALMKFYTDVEHTGATSEFYDKFTIRYHISTIFKSLWQNIAHHGTFMEEFNS
GKQFVRYINMLINDTTFLLDESLESLKRIHEVQEEMKNKEQWEQLPREQQQSRQSQLTQD
ERVSRSYLALATETVEMFHILTKQVQKPFLRPELGPRLAAMLNFNLQQLCGPKCRDLKVE
NPEKYGFEPKKLLDQLTDIYLQLDCARFAKAIADDQRSYSRELFEEVISKMRKAGIKSSI
AIEKFKLLAEKVEEIVAKNSQSEMDYSDAPDEFKDPLMDTLMTDPVMLPSGNIMDRSIIL
RHLLNSPTDPFNRQPLTESMLESVPELKERINAWMKEKQSRRPL
NT seq
3555 nt
NT seq
+upstream
nt +downstream
nt
atggaggagctaagcgcagatgagattcgcagaaggcgactggcacgactagccggaggg
cagacttcacaacccagtacccctcttagcactccgctgacatctccacagagagagact
ccacctggatccctccctggaccctcaggtgctgcacttcagcctgtgccaccagctgct
tctcaatcattggggctaaatgtccacagcggtactccagcaacatcccccatgggcaac
tccggtgtggtatatggcagtcaaagcagtgaaggtgtcagttccctctccagctccccc
tccaacagcttggagactcagtcacagagtttgtccagatcacagagcatggacattgac
cctgcctcctgtgaaaagagcatgtcccaggtggatgtggactcagggatagaaaacatg
gaggtggatgacggcgatcgcagggagaagaggaatctgaccgaaaaggaaacgtgttcc
acctcagatgttactgaagaacaggctctgcacctcatctgtaagatactccgcgtatcg
tggaaggaacaggggagagatgtcatctttctcccgtcattagctgcagaattccaccag
aactctaaagaagtgtattctgacttcaaagaccttatcggtcagatcctgatggaagtc
ttaatgatgtcatcccagtcacgtcttcacaacccttttgccagcttgaccgccacatca
cagccaatcgcagcagcgaaatccaatgaccaccgcctgacgcttgtgcagccttccagt
caaggaagcagccctataggccccagtgctgggtcgtttggagccagctccctgtctagt
cttggcgcatgcggagggggggcgtcttgtgattcaggcagcgaccgcttcaccattgaa
gcatgcaaagagacagagatgctgaactacctcattgagcgttttgacagcgttggcatg
gaggaaaaaaaagctcccaagatgtgtagccaaccgaatgtcagccagcttctcagtaac
atccgttctcagtgcatctctcatgttgctctggtcctgcagggcaccctgacccaacca
cggagcccccttcaaccgtctctgctggtaccttacatgctgtgccggaaccttccatac
ggctttattcaggagcttgtgcgcattacctatcaggaggaagaattgttcaaacagatc
tttattcccatcatccatgggctcgcacttgcaatgaaagaatgttcctttgaccatgac
aactttaagtttccactcatggcattgtctgaactttgtgaaattaagtttgggaagtgc
catcctgtgtgcagtttggttacctccctgccactttggtgtctgaaacctctgagccct
ggctgtggtagagagatccagaaactgtcctacctgggagcattctttagcctctctgtg
tttgcagaggatgatgccaaggtagctgacaagtatttctctggccctgccatcaccatg
gagaacactcgagttgtcagtcagtcattacagcactaccttgaatcagcaaggggtgac
atgtttaaaattctccacaacatccttcttaacggtgaaacacgagagttagctcttaat
tacatggcagctttagtcaacaacaatgtgaagaaagctcagatgcagactgatgacaag
ctggtgtcgacagatggcttcatgcttaacgttctatgggtgctacaacagcttagcatg
aagattaagctggagacggtggaccccaactacattttccatccgcggtgtcgcctcgct
gtcagtgtgaaagagactcgtctcaaagccaccatggaggagctcaaaagctggctggct
gaactgcatgaagatcctatcaagttcccagatccaaagttcccaactgagtgcttcttc
ctgacacttcacgctcatcatttatctatcctgccctgctgccggcgctacatacgcaga
ttgcgtgccatccgtgaactcaacaggactgtagaagagctcaaaaacagtgaaaatcaa
tggaaagattctcctctggccaatcggcacagagagatgctcaaacgatgcaaggctcag
cttaagaaactggtcagagccaaagcttgtgctgacgtgggccttttggatgagaacctg
ctccgcagatgtctgcagttttatagcacagtcattcagctcatccttcatatggtagac
cctgcctaccccaatgttagcctgccgctgaatcccgagattcccaaaagctttgctgct
ctacctgagttttacatcgaagatgtggcagaatttctgcttttcgttgtgcagtacgcg
ccccaggttttatatgagccatgtatccaggacatcgtcacatttctggtggtgttcatc
tgcagtcagaactacatcaggaacccataccttatcgccaagttggtggaggtgctcttc
gtgacaaaccctgctgtgcagcctcgtactcagcgattctctgaaatgatggaaaaccat
cccttgtctatcaaacagctggttcctgctctcatgaagttttacactgatgttgagcac
actggtgctacaagcgagttctatgacaagttcactatacgataccatatcagtactatc
ttcaagagtctctggcagaacattgcccaccatggaaccttcatggaggagttcaactct
ggcaagcagtttgtgcgctacatcaacatgctaattaatgacaccaccttcttgctagac
gagagcctggaatccctgaagcgaattcatgaggtccaagaggagatgaagaataaggag
cagtgggagcagctgcctagggagcagcagcagagccgccagtcccagctgactcaggat
gagcgggtgtctcgctcttatctggccctggctacagaaacggttgaaatgttccacatc
ctcacgaagcaggttcaaaagcctttcctcagacctgagttggggcctcggttagctgct
atgctgaactttaaccttcagcagctctgtgggcctaagtgccgggaccttaaggtggag
aaccctgagaagtatggctttgagcccaagaagcttctagaccagctgacagacatctac
ctgcagttagactgcgcccgctttgcgaaagcaatcgcagacgaccagcggtcatacagc
cgtgagctctttgaagaggtgatctcaaagatgaggaaggctggaatcaagtcctctatc
gccattgaaaaattcaagctgctagcagagaaggtagaggagatagttgccaagaactcc
caatctgaaatggactacagtgatgcgcctgatgagtttaaagaccctctgatggacact
ctgatgactgaccctgtgatgctgccctcgggaaatatcatggacagatccatcatcttg
cgccacctgctcaattccccgactgaccctttcaacaggcagccactcacagaaagcatg
ctggagtcagtgcctgaactaaaggaaaggatcaatgcctggatgaaagaaaaacagagc
agacggcccctctaa
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