Oryzias melastigma (Indian medaka): 112158901
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Entry
112158901 CDS
T07439
Symbol
hdac6
Name
(RefSeq) histone deacetylase 6
KO
K11407
histone deacetylase 6 [EC:
3.5.1.98
]
Organism
oml
Oryzias melastigma (Indian medaka)
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
oml01009
]
112158901 (hdac6)
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oml03019
]
112158901 (hdac6)
04131 Membrane trafficking [BR:
oml04131
]
112158901 (hdac6)
03036 Chromosome and associated proteins [BR:
oml03036
]
112158901 (hdac6)
Enzymes [BR:
oml01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
112158901 (hdac6)
Protein phosphatases and associated proteins [BR:
oml01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
112158901 (hdac6)
Messenger RNA biogenesis [BR:
oml03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
112158901 (hdac6)
Membrane trafficking [BR:
oml04131
]
Autophagy
Aggrephagy
Other aggrephagy associated proteins
112158901 (hdac6)
Chromosome and associated proteins [BR:
oml03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
112158901 (hdac6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
zf-UBP
zf-UBP_var
Motif
Other DBs
NCBI-GeneID:
112158901
NCBI-ProteinID:
XP_024148349
Ensembl:
ENSOMEG00000011758
LinkDB
All DBs
Position
LG7:complement(24879302..24896546)
Genome browser
AA seq
1037 aa
AA seq
DB search
MEKGRRKSDLQEAKRRGRMERSHQKEEELSSIMGALDLSGGSAARGTGLVYSEIFTQHQN
LWESSHPESPDRVRSIMEELERQQLLPRCVRVQPRTATEEELLLVHTKDYIDLIKSTERM
TQPELQTLSCKYDSVYLHPLSFQVCALAAGSVLQLVDEVMTFNLRNGFAVIRPPGHHAQT
NEPNGFCVFNNVGIAARYARSRHAVSRVLIVDWDVHHGQGLQYLFQEDPSVLYFSIHRYE
HASFWPHLPESDSSFTGSENAKGRNINIPWNKIGMSDADYISAFQHVLLPVAYEFQPQLV
LVSAGFDAAAGDSKGEMNVSPQCFHTLTHMLMSLAEGRLILALEGGYNLQATAEGAAASV
RALLGGACPRLTPPTEPSESALHSISQTISELYSHWAFLQVLEGTSSAEDDLIRSVPGPI
SAVTAAPPPAVATITGLVYDERMMEHVNLWDRHHPEQPQRIFRIFSRHQQLGLVDRCQRI
QSRSATEEELAMCHSLKHIQQMSATATMKPRDLHRLGDEFVSIFISNQSFQSAQLAAGSC
FAAVEHILDGQVNNAVAIVRPPGHHAEVDSPCGFCLFNTAALTARHAQKVSPDLKILIVD
WDVHHGNGTQHMFEDDSSVLYISLHRYDNGTFFPSSEDAAPEKVGVAKGVGYNVNVAWSG
GRMGDSDYLAAFHQVVMPIASEFNPGLVLVSAGFDAARGDPLGGYNVTPEGYAHLTHMLM
SLAGGRVLIILEGGYNLTSISDSMAACTSVLLGDPPPSLVTPLPPPHHCAAVAINEVIQH
HAPYWRSLRVQIPDSVRASSKHRGKRGSKGRDRTSGQSSTSRPESSMAQSDVEQLTQGLA
TLDLSQSPAHPALPGPAAPPPEGGVGSESHPHSDSVEEAQVIKGDSPPRAAPPQVTPEEE
EPEPEGACGWAESQKSVELMCAADTLYVVDPLPWCPHLDAVKPLPPTGIDVSRPCQDCAS
EAENWICLTCYQVFCGRYVNEHMVAHGAEEEHPMVLSFSDLSVWCYLCESYVHHQILFQT
KNAAHLSKFGEGCPPWN
NT seq
3114 nt
NT seq
+upstream
nt +downstream
nt
atggagaaaggaagaagaaaaagtgatctgcaggaagcgaagaggagaggaagaatggag
agaagccatcagaaggaggaggagctaagtagcatcatgggggctctggatctttccggc
ggatctgcagccagaggaaccggtctggtttactctgagatcttcacacagcatcagaac
ctgtgggagtccagtcatccggagagtccagacagagtccggtccatcatggaggagctg
gagcggcagcagctgctgccccgctgtgtccgtgtgcagcctcggacagcgacagaggag
gagctgctgctcgtgcacacgaaggattatatcgacctgatcaagtccacagagaggatg
acgcagccggagctgcagacgctgtcctgcaaatacgactctgtctatctgcatcctctg
tcctttcaggtgtgtgcgctggccgccggttctgtcctccagctggtcgatgaggtcatg
accttcaacctgagaaatggatttgctgtcatcagacctccaggtcaccacgctcagacc
aacgagcccaacggcttctgtgtgttcaacaacgttggaattgcagcacgctacgctcgc
agccgtcacgccgtcagcagggtgttaattgtggactgggacgttcaccatgggcagggt
cttcagtacctgttccaggaagatcccagtgtgttgtacttcagcatccatagatacgag
cacgcctccttctggcctcacctgccagagtctgacagcagttttactggcagtgaaaat
gctaaaggaagaaacattaacattccttggaacaagattggaatgagcgacgctgattac
atctctgctttccaacatgtcctgctgcctgtggcctatgagtttcagcctcagctggtt
ctggtctcggctggatttgatgcagcagctggagattctaagggggaaatgaatgttagt
cctcagtgctttcacactctgacacacatgctgatgagtctggctgaaggtcgtctgatt
ctcgctctagagggaggttacaacctgcaggcgacagcagaaggagctgcagccagtgtc
cgagctctgttgggcggagcctgccctcgtttgactccgcccactgaaccttctgaaagc
gccctgcactccatctctcagaccatctctgagctgtactcccactgggccttcctccaa
gtcttggagggaacttcctcggctgaagatgacctaatcaggtcagttccgggtcccatt
agcgcggtaaccgcggcccctccccctgctgttgccacaatcacaggcttggtctacgat
gagagaatgatggagcacgtcaatttgtgggacagacaccacccggagcagcctcagagg
atcttcaggatcttctccaggcaccagcagctgggattggtcgaccgttgccagcgaatc
cagagtcgctcggcaacagaggaagagctagctatgtgtcatagtttgaagcacatccaa
cagatgagtgcaacagcaaccatgaagcccagagaccttcacaggctgggggacgagttt
gtctccatcttcatcagcaaccagagcttccagtccgcccagctcgctgctggaagctgc
tttgctgctgtggagcatatcctagatggacaggtaaacaacgccgtggccatcgtccgt
cctccaggccatcacgccgaggtcgactctccttgcggcttttgtctcttcaacacagca
gcgctcaccgctcgccacgctcagaaagtctcccccgatctgaagatcttgattgtggac
tgggatgttcaccacgggaacgggacgcagcacatgtttgaggacgacagcagtgttctc
tacatctccctccatcgctatgacaacgggactttctttccatcatcggaagacgctgcc
cctgaaaaggtgggcgtggccaaaggtgtggggtataatgtgaacgtggcgtggagcggt
gggcggatgggggattctgactacctggcagcctttcaccaggtcgtcatgccaatcgca
tcagagttcaaccctggcctggttctggtgtccgccgggttcgatgcagcgcggggggat
ccactgggtggatataatgtgaccccagaaggatacgcccacctcacgcacatgctgatg
tcactggcaggagggcgggtcctcatcatcctggagggaggctacaacctcacctccatt
tctgactccatggctgcctgcaccagcgtgctgctgggagaccctccgccatcactggtg
acccccctgcccccccctcaccactgcgctgcagtagccatcaacgaggtcatccagcac
cacgccccctactggaggagcctgagggttcagattccagactcggtgcgagcatcctca
aagcatcgtgggaaacgtggttctaaaggaagagaccggacgtcggggcagagcagcacg
agcagacctgagtcctctatggcgcagagcgacgtggagcagctcacgcagggtttggcc
actctagacctcagtcagagcccggcacacccggcccttcctggccctgcagccccgccc
ccagagggaggagtcggatcagagtcccacccacattcagactctgttgaagaagctcag
gtgatcaaaggtgacagcccgccgagggcagcaccacctcaggtaacacctgaggaggag
gagcctgagccagaaggagcgtgcggttgggcggagtctcagaaaagcgtggaactaatg
tgtgcagcagacactctgtatgtggtcgacccgctgccctggtgtccacacctggacgct
gtgaagcccctcccccccacaggtatagacgtgtcgcggccctgccaggactgtgcatct
gaggccgagaactggatctgcctcacctgctaccaggtgttctgcgggcgctacgtcaac
gagcacatggtggctcacggcgcggaggaggagcaccccatggttctgagtttctctgat
ctctctgtgtggtgttacctgtgcgagtcctacgtccaccaccagattctgttccagacc
aaaaacgctgcccacctctccaagttcggagaaggctgccccccgtggaactga
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integrated database retrieval system
