Oryzias melastigma (Indian medaka): 112159034
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Entry
112159034 CDS
T07439
Name
(RefSeq) serine/arginine-rich splicing factor 6 isoform X1
KO
K12893
serine/arginine-rich splicing factor 4/5/6
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml03040
Spliceosome
oml05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112159034
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
112159034
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
oml03041
]
112159034
Spliceosome [BR:
oml03041
]
Common components
Common spliceosomal components
SR proteins
112159034
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_3
Motif
Other DBs
NCBI-GeneID:
112159034
NCBI-ProteinID:
XP_024148598
Ensembl:
ENSOMEG00000006001
LinkDB
All DBs
Position
LG7:complement(3392529..3396868)
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AA seq
377 aa
AA seq
DB search
MPRVYIGRLSYHVRDKDIKRFFSGYGKLLEVDMKNGYGFVEFEDNRDADDAVYELNGKEL
CGERVIVEHARGPRRDRDGNGGGYWGGGRSSGYSSSSSSSSRTRVGRDKYGPPVRTEYRL
IVANLSSRCSWQDLKDFMRQAGEVTYADAHKECPNQGVIEFRSYSDMKRALDKLDGTDIN
GRKIRLVQDQPQKRRSYSGSRSRSRSRRRSRSRSRRSSKSRSRSHSRSRSRSNRRRRSRS
RSGKSRSRSGERKSRSLSHKSRSRSRSRSRRSKSRSQSRKSRSRSADRKSRSKSRSKGKS
DRDSRSRSKEKSADKKSRSRSASPVENGEKEPPEKSPNRSPSPQEGDRRSNSREKRSASR
SKSRSRSNSRSRSASQD
NT seq
1134 nt
NT seq
+upstream
nt +downstream
nt
atgcctcgtgtttacataggccgactaagctatcatgtccgtgataaagacattaagagg
ttctttagcgggtatggtaaactactggaagtcgatatgaaaaacggctatggctttgtt
gagtttgaggataacagagatgctgacgatgctgtgtacgagctcaacgggaaggagctg
tgtggggagcgggtgatcgtcgagcacgcccgcggaccgcggcgagaccgggacggcaac
ggtgggggttactggggtggtgggcgcagcagcggttacagcagcagcagtagcagcagc
agcaggacccgtgtaggcagagacaagtatggacctccggtccgtactgagtaccgtctc
attgtggcgaacttgtccagtcgttgcagctggcaggaccttaaggactttatgcgtcag
gctggagaggttacttatgccgatgctcacaaggaatgccctaaccagggagtaattgag
ttccgaagctattctgacatgaagagagctttggacaagctggatggaacagacattaat
ggccgaaagattcgtttggttcaagaccaacctcaaaagagaaggtcctactctggtagt
cggtccaggtctcgtagtcgccgccgttcacgcagcaggagtcgcaggagctcaaagagc
cgttccagatcccactctaggtctcgttctcgcagcaacagaaggcgtcgttcccgctca
cgatctggaaagtctcgctcaaggtccggagaaaggaaatctcgctcccttagccataaa
tcccgttcacggtctcgatcccgatctcgcaggtccaagtctcgttctcaatctcgcaag
tctcgctcccgctcggctgaccggaagtctcgttccaagagccgctccaaggggaagtct
gatcgggattctcgtagcagatcaaaggaaaagtctgccgataaaaagtctcgcagccgc
tccgcctcccctgttgaaaatggagaaaaggagcctccagagaaatcacccaaccgttcc
ccatccccacaggaaggtgatcgccgatccaactcaagagaaaagcgctcggcctcccgc
tcaaagtcccgctcacggtccaattcccggtccagatcagcctctcaggattag
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