Oryzias melastigma (Indian medaka): 112159074
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Entry
112159074 CDS
T07439
Symbol
scn8aa
Name
(RefSeq) sodium channel, voltage gated, type VIII, alpha subunit a isoform X1
KO
K04840
voltage-gated sodium channel type VIII alpha
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
112159074 (scn8aa)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
oml04040
]
112159074 (scn8aa)
Ion channels [BR:
oml04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
112159074 (scn8aa)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
Na_trans_cytopl
PKD_channel
IQ_SCN5A_C
FraC
GPHH
HpsJ
Lustrin_cystein
HB_ELP1
New_glue
Motif
Other DBs
NCBI-GeneID:
112159074
NCBI-ProteinID:
XP_024148679
Ensembl:
ENSOMEG00000019478
LinkDB
All DBs
Position
LG7:7546984..7593342
Genome browser
AA seq
1967 aa
AA seq
DB search
MAAPLLAPPGPDSFKRFNKESLVVLEQRIKEEKNRKPPKQDSSYRDDDDENKPRPNSDLE
AGKSLPYIYGDIPKGMVAVPLDDLDPFYLNTQKTFIVLNRGKTIFRFSATPALYFISPFN
PIRQLAIKILIHSLFSMIIMCTILTNCIFMTFSDPPEWSKQVEYTFTGIYTFESLVKITA
RGFCIDDFTFLRDPWNWLDFMVISMAYITEFVDLGNVSALRTFRVLRALKTISVIPGLKT
IVGALIQSVKKLSDVMILTVFCLSVFALIGLQLFMGNLRQKCVYWPINLNETYLNNGSKG
FDWDEYISNDTNFYKLHGQIDPLLCGNSSDSGRCPEGYTCMKAGRNPNYGYTSFDSFGWA
FLALFRLMTQDFWENLYMLTLRAAGKTYMIFFVLVIFVGSFYLVNLILAVVAMAYEEQNQ
ATMEEAQQKEEEFKAMLEQLKKQQEEAQTAAMATSAGTVSEDAVEDDGGGHMSCSSSEMS
KLSSKSAKERRNRKKKWRQKEQEKEKGDSEKFVKSESDDGSKRSRFRFPDNRLGRKSSIM
NQSLLSIPGSPFLSRHNSKSSIFSFKGRSKDVGSENEFADDEHSTVEECEERRGSLFSPY
RRNSYTGFHGKRNSTVDCNGVVSLIGTGPGGRLLPEVKIDKAATDDSPTTEVEVKKKLSG
SLMVSVDQLNTSFGRKERANSVMSVITNTLVEELEESQRKCPPCWYKFSNTFLIWECCPL
WIKIKEIVNLIVMDPFVDLAITICIVLNTLFMAMEHYPMTTEFEDMLSVGNLVFTGIFAG
EMFLKLVAMDPYYYFQEAWNCFDGFIVTLSLVELALADVEGLSVLRSFRLLRVFKLAKSW
PTLNMLIKIIGNSVGALGNLTLVLAIIVFIFAVVGMQLFGKSYKDCVCKISETCVLPRWH
MHDFFHSFLIVFRVLCGEWIETMWDCMEVAGQAMCLIVFMMVMVIGNLVVLNLFLALLLS
SFSADNLAATDDDGEPNNLQISVMRIKKGIAWVKAKMRIVVASLLRRSPMEDEQKPLDDM
YKEKPNCIANHTGVDINRDLDYAKNGNGTTSGIGSSVGKYMIDEDHMSFIHNPNLTVCVP
IAVGESDFENLNTEDFSSESDIENSKELDDTSSSEGSTIDIKPDVEEVVVVEAVEEYMEP
EACWTDACVAKYKCCDVDITIGWGKTWWFLRKTCYLIVEHNWFETLIIFMILLSSGALAF
EDVYIEQRKTIRIILEYADRVFTYIFILEMLLKWVAYGFVKYFTNAWCWLDFFIVDVSIV
SLVANALGYSDLGPIKSLRTLRALRPLRALSRFEGMRVVVNALVGAIPSIMNVLLVCLIF
WLIFSIMGVNMFAGKYGFCFNDTAEDYLPYSEVNNKSDCIKLMEENNTEIRWRNVKINFD
NVGAGYLALLQVATFKGWMDIMYAAVDSRGVEMQPSYEINIYMYIYFVVFIIFGSFFTLN
LFIGVIIDNFNQQKKKFGGQDIFMTEEQKKYYNAMKKLGSKKPQKPIPRPQNKIQGMVFD
FVTQQVFDISIMILICLNMVTMMVETDDQSDETENVLYWVNFIFIVVFTTEFLLKLFALR
HYYFTNGWNIFDVVVVILSIVGMFLADLIEKYFVSPTLFRVIRLARIGRILRLIKGAKGI
RTLLFALMMSLPALFNIGLLLFLVMFIFSIFGMSNFGYVKHSAGIDDLYNFETFGNSMII
LFMITTSAGWDGLLLPILNYPPDCDANLENPGTSVKGDCGNPSVGIFFFVMYIIISFLIV
VNMYIAIILENFSVATEESADPLSEDDFETFYEIWEKFDPTASQFITFAKLSDFADALEH
PLRVPKPNTIELIAMDMPMVSGDRIHCLDILFAFTKRVLGDSGELDMLRQQMEERFVAAN
PSKVSYEPITTTLRRKQEDVSAKTIQNAYRAHLIRRGIIFKRHILANNMLENGGTNQDKK
ESTPSTASLPSYDSVTKPDKEKQDKSKEEWAKKEKDKNQKDEWESKC
NT seq
5904 nt
NT seq
+upstream
nt +downstream
nt
atggctgcaccccttcttgcaccgccaggacctgatagcttcaagaggtttaacaaggaa
tctttggtggtccttgagcagcgcatcaaagaggagaaaaacaggaagccgcccaagcag
gacagcagctacagagatgacgatgacgagaacaagccgagacccaacagcgacctggag
gctgggaagagccttccctacatctatggagacatccctaaaggaatggtggcggtacca
ctggatgatctggatcccttctacttgaatactcaaaaaacatttatagtgctaaataga
gggaagacaatcttccgttttagtgccacacctgccttgtacttcataagtcctttcaat
ccgattaggcaactagctattaaaattttgatacattctcttttcagcatgatcattatg
tgtactattttgaccaactgtatattcatgacctttagtgatccccccgaatggtcaaaa
caagtagagtacacattcacaggaatttatacatttgagtctcttgtaaaaatcactgcc
cgtggattctgtatagacgattttacattcctaagagatccctggaactggctggatttc
atggtcatttcaatggcatatataacagagtttgtggacctgggcaatgtatctgcgctg
agaacgttcagagttctccgagcattgaaaactatctctgtcattccaggcctaaagacc
atcgttggtgccctgatccagtctgtgaagaagctttcggatgtgatgatcctgactgtc
ttctgcttgagtgtctttgccctcattggtctccagctcttcatgggcaacctgcgccaa
aagtgtgtttattggccaatcaatttgaacgaaacatacctgaacaatggcagcaagggc
tttgactgggatgagtacatcagtaacgataccaatttttacaaactgcatggccagata
gaccccctgctctgtggaaacagctcagactctggccgctgcccggagggctacacgtgc
atgaaagctgggaggaatccaaactacggctacaccagctttgacagctttggctgggcc
ttccttgctttgttccgactcatgacacaagacttctgggaaaacctttatatgctgact
ttgagggcagcagggaagacctacatgatcttctttgtcttggtgatctttgtgggctca
ttctacctggtcaatctaattctggctgttgtagccatggcttatgaagagcagaaccaa
gccacaatggaagaagcccagcagaaggaggaagaatttaaggctatgctggagcagctg
aagaaacagcaggaggaagcccagactgctgccatggcaacatctgctggtacagtgtca
gaggatgcagtagaggatgacggaggggggcatatgtcttgcagttcgtcagagatgtca
aagcttagttctaagagtgccaaagaacgccgaaaccgtaagaagaagtggcgacagaaa
gagcaggagaaggagaagggcgatagtgagaagtttgtcaaatcagagtcagatgatgga
agcaaaagaagccgcttccgttttcctgataatcgactgggtcgaaagtcttccatcatg
aaccagtctctccttagcattcctggctcgccattcctctcccgccacaacagcaagagc
agcatctttagtttcaagggccgaagcaaggatgtgggctcggagaatgagttcgccgat
gatgaacacagcacggttgaggaatgcgaagagcgccgtggctccctgtttagcccctac
cgacggaacagctacacgggcttccatggaaagaggaacagcacagtggactgcaacgga
gtggtgtcacttatcggcactgggcccggtggacgacttctgcctgaggtgaaaatagat
aaggcagctactgatgacagtccaactactgaggttgaggtgaagaagaagctgtcgggc
tccctgatggtgtctgtggaccagctcaatacctcctttgggcggaaagagcgggccaac
agtgtcatgagcgtcattaccaacacactagtggaggagctggaggagtctcagcgaaag
tgtccgccatgctggtataaattttctaacacattcctgatctgggaatgctgccccttg
tggattaagatcaaggagattgtaaacctcatagtcatggatcctttcgtggacctggcc
atcactatctgtattgtcctcaacaccctcttcatggcaatggagcattaccccatgacc
actgaatttgaagatatgctctccgtgggtaatctggtgttcactgggatctttgctggt
gagatgtttctcaagcttgtggccatggatccatactattacttccaggaagcttggaac
tgttttgatggatttattgtgacactgagtttggtggagctggctttggctgatgttgaa
ggtctttctgtgctgcggtcattccgattgctgagggtgttcaagctggccaagtcatgg
cccaccctcaacatgctgatcaagatcattggtaactctgtgggcgccttgggaaacttg
actctggtgctggccatcattgtcttcatctttgctgtagtgggcatgcagctttttgga
aagagctacaaagactgtgtgtgtaaaatcagcgagacctgtgttctgcctcgctggcac
atgcacgacttcttccactcattcctgatcgtcttccgggtgttgtgcggtgaatggata
gagaccatgtgggactgtatggaggttgctggtcaagcaatgtgtcttatcgtctttatg
atggttatggtcattggcaaccttgtggtgttgaacttgttccttgccttgctgctgagc
tcattcagcgctgacaacttggctgcaactgatgacgatggtgagccaaacaaccttcag
atttccgtcatgcggatcaagaagggcattgcttgggtaaaggcgaaaatgcgcatagtg
gtggcaagtcttctaagaagatctccaatggaagatgagcagaagccgttggacgatatg
tataaagaaaagcccaactgcattgctaatcacactggcgtagacatcaaccgtgaccta
gactatgccaaaaatggcaacggcacaaccagtggtattggcagcagtgtgggcaagtac
atgatcgatgaggaccacatgtcattcatccacaacccaaacctcacggtctgcgtgccc
attgccgtgggagaatctgactttgagaatctcaacacagaagacttcagcagtgaatcg
gacattgagaacagcaaagagctggatgacaccagttcttctgagggtagcaccattgac
atcaagccagatgtggaagaggtggtggtggtggaggcggtggaggaatacatggaacca
gaagcttgttggacagatgcttgtgttgccaaatataagtgctgtgatgtggacataacc
attggctgggggaagacctggtggttcctgagaaaaacttgctacctgatagtggaacac
aactggtttgagacgctgatcatcttcatgatcctcctcagtagtggcgctctggctttt
gaagatgtgtacatagagcagaggaagaccattcgaattattttggagtatgctgacagg
gtcttcacctacatcttcatcttggagatgttgctgaagtgggttgcgtatggttttgtc
aagtacttcaccaacgcctggtgttggctggacttcttcattgttgatgtgtctatagtc
agccttgtagctaatgcgctgggctactccgatctagggcccattaaatcactcaggaca
ctaagggccttgagacccctcagagccttgtcacgttttgaagggatgagggtggtagtc
aacgccttggttggtgccatcccttccattatgaatgtgttgctggtttgcctcatcttt
tggctgattttcagcataatgggggtcaacatgtttgcgggcaagtacgggttctgtttc
aatgacacggcagaggactacctcccatattcggaagtcaacaacaagtccgactgtatt
aaactcatggaagaaaacaacactgaaatcaggtggagaaacgtcaagatcaactttgac
aatgtgggcgccggctaccttgctcttttgcaagtggccaccttcaaaggctggatggac
atcatgtacgctgcggtggattccagaggggtggaaatgcaaccaagttatgaaatcaac
atctacatgtatatctattttgtggtcttcattatatttgggtccttctttactctaaac
ctcttcattggtgtgatcattgacaacttcaaccagcagaagaaaaagtttggaggtcag
gatatcttcatgacagaggaacagaagaagtactacaacgctatgaaaaaactcggctct
aaaaaaccacaaaaacctatcccacgaccacagaacaagatccagggaatggtgtttgac
tttgtgacgcagcaggtctttgacatctccatcatgatcctgatctgcctcaacatggtc
actatgatggtggaaacggatgaccagtctgacgaaacagaaaatgtcctgtactgggtc
aactttatcttcatcgtcgtcttcactacagagtttttgctgaagctctttgctctgcgg
cactattactttaccaatggatggaacatatttgatgtggtggtggtcatcctttccatt
gtcggtatgtttctggctgacctgattgagaagtactttgtgtcaccgacgttgttcagg
gtgatccgattggctcgtattggtcgaatcctccgtctgatcaaaggagccaaaggcatc
cggactttactctttgccttgatgatgtcactgccggctctgttcaatattggcctgctg
ctttttctggtcatgttcatcttctccatctttgggatgtccaactttggctatgtaaaa
cacagtgcaggtattgatgatctatacaactttgagacctttggcaacagcatgatcatc
ctgttcatgatcaccacatcggccggctgggacggtttgctgctgccgattctcaactac
ccaccagactgcgatgccaacctggagaaccctggtacttcggtgaagggtgactgcggc
aacccctcagtgggaatcttcttttttgttatgtatatcatcatttctttcctgattgtg
gttaacatgtacattgccatcatcctggagaacttcagtgtggccacagaggaaagtgct
gacccactgagtgaggatgactttgagactttctatgagatctgggagaagtttgatccc
actgcctctcaattcattacattcgccaagctgtctgactttgctgatgctttggagcac
ccacttcgtgtgccaaagcctaacaccatagaactaattgccatggacatgcccatggtg
agtggtgatcgcattcactgcctggacatcctgttcgctttcacaaagcgtgtgctgggt
gatagtggtgagttggacatgctgaggcagcagatggaggagcgttttgtggcagcaaac
ccctccaaggtgtcgtatgaacctatcaccaccaccctccggcgcaaacaggaggatgtc
tctgccaaaaccatacagaatgcctaccgtgcccaccttatcaggcgtggcatcatcttt
aagcgccacattttagctaacaatatgcttgaaaatggtgggaccaaccaagacaagaag
gagagcactccgtccacagcgtctctcccatcctacgacagtgtgaccaagcctgacaag
gagaagcaggacaaaagcaaagaggaatgggccaagaaagagaaggacaaaaaccaaaaa
gacgagtgggaatccaagtgttag
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integrated database retrieval system
