Oryzias melastigma (Indian medaka): 112159118
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Entry
112159118 CDS
T07439
Symbol
rbm39b
Name
(RefSeq) RNA-binding protein 39b isoform X1
KO
K13091
RNA-binding protein 23/39
Organism
oml
Oryzias melastigma (Indian medaka)
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
oml03041
]
112159118 (rbm39b)
Spliceosome [BR:
oml03041
]
Common components
Common spliceosomal components
General mRNP proteins
112159118 (rbm39b)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RBM39linker
RRM_occluded
RRM_5
RRM_7
RRM_8
Motif
Other DBs
NCBI-GeneID:
112159118
NCBI-ProteinID:
XP_024148755
Ensembl:
ENSOMEG00000010704
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All DBs
Position
LG7:complement(12639720..12645824)
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AA seq
544 aa
AA seq
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MADDFDVEAMLEAPYRKEKKRSKLDHLSSNLFGYYKDENKSSHANGHDDHNKKKRRSRSR
SRSPGSKKKRSRSRSKDRKKSKKRSRSRERKRSRSKERHRSRSRSKDRTGRYKARKSPVR
KRTKSQSPPKKERSPVRQPIDNLTPEERDARTVFCMQLAARIRARDLEDFFSAVGKVRDV
RIISDRNSRRSKGIAYIEFVETSSVPLAIGLTGQRLLGVPIIVQASQAEKNRAAAAANNL
QKGSAGPMRLYVGSLHFNITEEMLRGIFEPFGKIEGIQLMMDSETGRSKGYGFISFADAE
CAKKALEQLNGFELAGRPMKVGHVTERSDSSTASSFLDNDELERTGIDLGTTGRLQLMAR
LAEGTGLKIPPAAQQALQMTGSIPFGNMAAPASESGQQKAGVFAFLWRKTIITFFFFAVP
TPAPSQALNLPSQPLATHCLQLSNLFDPQAENDPSWASEIQDDVIEECNKHGGVVHIYVD
KNSPQGNVYVKCPSIPAAMATVNALHGRWFARKMITAAYVPLPTYHNLFPDSVTAKQLLM
PSRR
NT seq
1635 nt
NT seq
+upstream
nt +downstream
nt
atggctgacgactttgacgttgaggccatgctggaagcgccatacagaaaggaaaaaaag
agatccaagctagatcatctatcatctaatctatttggttactacaaggacgagaacaag
tcctctcatgcaaatggacatgatgatcacaacaagaagaagaggagaagtcgcagcagg
agtcgcagcccaggctccaagaagaagagaagtagaagcagaagcaaagacagaaaaaag
agtaagaagagaagtcgaagtcgagaaagaaagcgcagtcgcagcaaggagcgccatcgc
agtcgatcccggagcaaggatcggactggacgttacaaagcacggaagagccctgtccgg
aagcggacaaaaagtcagagcccgccaaaaaaagagagaagtcctgtcaggcaaccaatt
gacaatttaacacccgaggagagggatgctcgcaccgtcttctgtatgcagctggctgca
agaatcagagctcgagacctggaagactttttctctgccgtcggcaaagtaagagatgtg
cgaataatctctgacagaaactcccggagatcaaagggcatcgcatacatagagtttgtg
gagacgtcctctgtacctctggcaatcggcctgactggtcagaggctgcttggagttccc
atcatcgtccaggcatctcaggcagagaaaaacagagctgcagctgcagcaaacaatctc
cagaagggcagtgcaggtccaatgcgactgtatgttggatcacttcactttaacatcact
gaagaaatgctgcgaggaatctttgagccttttggaaagattgaaggtatccagttgatg
atggacagtgaaacaggaagatccaaaggctatggcttcatatcgtttgcagatgctgaa
tgtgcaaagaaggctctggagcaactgaacggctttgagctggcgggccgtcccatgaag
gtggggcatgttacagagcgctccgactcctcaacagctagttcattcctggacaacgac
gaactggagaggaccgggatcgaccttggcacgacaggccgtttacagctgatggctcga
ctagcagaaggaactggcttgaagatccctcctgctgctcagcaggcactgcagatgacc
gggtccataccttttgggaatatggctgctccagcaagtgagtcagggcagcagaaagca
ggtgtttttgcatttctttggagaaagacaataataactttttttttttttgcagttcca
actccagctccaagccaagccttgaacctcccatcacagccgctggccactcactgcctt
cagttgtccaacctgtttgacccacaggctgaaaatgaccctagctgggcctcagaaatt
caagatgatgtgattgaggagtgcaacaagcatgggggagttgttcacatctacgttgac
aagaactctccccagggcaacgtatatgtcaagtgtccctcaatacctgcagcaatggca
acagtaaatgcacttcacggacgttggtttgcacggaagatgataactgctgcctatgtt
cctttaccaacctaccacaaccttttcccagactccgtaacggcaaaacagcttctaatg
ccttctcgtcgatag
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