Oryzias melastigma (Indian medaka): 112159174
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Entry
112159174 CDS
T07439
Symbol
zgc:158828
Name
(RefSeq) probable ATP-dependent RNA helicase DHX35
KO
K13117
ATP-dependent RNA helicase DDX35 [EC:
5.6.2.6
]
Organism
oml
Oryzias melastigma (Indian medaka)
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
oml03041
]
112159174 (zgc:158828)
Enzymes [BR:
oml01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
112159174 (zgc:158828)
Spliceosome [BR:
oml03041
]
Complex C
Other components
Complex C specific factors
112159174 (zgc:158828)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
ABC_tran
AAA_19
Cas3-like_C_2
nSTAND3
AAA_7
AAA_30
AAA_23
Motif
Other DBs
NCBI-GeneID:
112159174
NCBI-ProteinID:
XP_024148842
Ensembl:
ENSOMEG00000012536
LinkDB
All DBs
Position
LG7:11064465..11073909
Genome browser
AA seq
699 aa
AA seq
DB search
MAAPLSTMKFWKPGSEAPGVSEERELNSETTGSPIIFNPNTALSIERQRQKLPVFKHRNN
ILYLVESFQTVIIVGETGCGKTTQIPQYLVEAGWATEGKVIGVTQPRRVAAISVANRVAE
ERGALLGHEVGYTIRFDDCSDPHATRIKFLTDGMLVREMMADPLLSKYSVLMLDEAHERT
LYTDIAIGLLKKIQKKRRDLRVIVASATLDAKKFHEFFNLNESGDPNKDTCGILTVEGRC
FPVDIFYTVSPVPDYVKATVETVMKIHETEDDGDVLAFLTGQEEVEKVVSLLQEQARSLS
RYGMKKHLRILPMYSGLPYAEQMRVFDRVPPTVRKVVVATNIAETSITINGIVFVIDCAF
VKLRAYNPRTAIESLVVTPISKASASQRAGRAGRNRPGKCFRLYTEEDYDKLPASTVPEM
QRTNLAPVILQLKALGIDNVLRFSFLSPPPAQTMVQALELLYALGGLDHYGRLTDPMGVR
MAEFPLSPMFAKMLLESGNFGCSKEIVTIAAMMQIQNIFVVPPNQKKVAAREHRKFAVAE
GDHLTMLNVYEAFIKHQKSSQWCQEHFLNYKGLVRAVTVREQLRRLMNKFKVPRTSSEGD
PDVILRCIVAGFFANAARIHHSGSYRTLRDDRELHIHPNSVLYGEKPPKWVVFNEVVQTS
KYFMRDVTAVESSWLVELAPHFYKQAKHGSLASKRSRVL
NT seq
2100 nt
NT seq
+upstream
nt +downstream
nt
atggcggctcccctctccacgatgaaattttggaagccgggctcggaggcaccgggcgtc
tcagaggagcgtgagctcaactcggagaccaccggctctcccatcatcttcaacccgaac
accgccctctctatcgagaggcagcgacagaaactccccgtttttaagcacagaaacaac
atcttgtatttggttgaaagcttccagactgtgataatagttggtgagactggctgtggg
aagacaacacaaatacctcagtacctggtggaggctggctgggccacagaagggaaagtc
atcggagtgacgcagcctcgacgtgttgccgctatctctgtggcaaaccgtgttgcagag
gagcgaggggctctgctgggacatgaggtgggctataccatccggtttgatgactgctct
gatccccacgccacaaggatcaagtttctgacagatggaatgctggtccgggagatgatg
gctgaccctcttttgagcaagtatagtgtgttgatgctggatgaagcacatgagaggact
ttgtatacagacatagccattggtctactaaagaagattcagaagaagcgacgagacctc
agggtgattgtggcgtctgccaccctcgatgccaagaaattccatgaattctttaacttg
aatgagtccggagatccaaacaaggatacttgtggaattctgactgtggaaggacgctgc
tttcctgtggatatcttctacactgtcagtcctgttccagattatgtaaaggccacagtg
gagactgtcatgaagatccacgagacggaggatgacggcgacgttctggcttttctcaca
gggcaggaagaagtggagaaggtggtctctctcctccaggaacaggccaggtctctgtcc
cgatatggcatgaagaaacacctgaggattttgcccatgtattctggtctgccttatgct
gagcagatgagggtgtttgaccgggttcctcctactgttcgcaaggttgtggtggccaca
aacatcgctgaaacctccatcaccatcaatggaattgtgttcgtcattgactgcgcgttt
gtgaagctgcgggcctacaaccctcgcaccgccatcgagtcgttggtggtcactcccatc
tccaaggcttcagccagccagagggctgggagggcgggacggaaccgacccggaaaatgc
ttcaggctgtacacggaggaggattatgacaaactgcctgcctccactgtgccagagatg
cagcgcaccaatttggctcctgtcatcctccagctcaaagcactcggcatcgacaacgtt
ctgcggtttagctttctttctcctcctccagctcagacgatggttcaggccctagaactt
ctttacgctctgggagggctggaccattatggacgactgactgatcccatgggcgtgcgg
atggcggagttccctctcagccccatgtttgctaaaatgctgctggagtcgggaaacttt
ggctgctccaaagagattgttaccatagcagcaatgatgcagattcagaatatatttgtg
gtgccacccaatcagaagaaagttgctgctcgagagcacaggaaatttgcagtcgccgag
ggagaccacctcaccatgctgaacgtgtatgaagcattcattaagcatcagaagagctcc
cagtggtgtcaggaacattttctcaactacaagggtcttgtgcgagcagtgacggtgcga
gagcagctccgccgtctcatgaacaagtttaaggtgccacgaacttccagtgaaggcgat
ccagacgtgatcttgaggtgcattgttgcggggttctttgccaatgctgcccgcattcat
cattcaggttcctacaggactctacgagatgatcgtgagcttcacatccaccccaactct
gtactgtatggagaaaaacctccaaagtgggtggtcttcaatgaagtggtgcagacctcc
aaatacttcatgcgtgatgtgactgctgttgaatcgtcctggctggttgagttagcgcct
cacttttacaagcaagctaagcatgggtctttggccagcaagagatccagagtcctgtaa
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