Oryzias melastigma (Indian medaka): 112159283
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Entry
112159283 CDS
T07439
Name
(RefSeq) collagen alpha-1(XX) chain isoform X1
KO
K24357
collagen type XX alpha
Organism
oml
Oryzias melastigma (Indian medaka)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
fn3
VWA
Collagen
Pur_ac_phosph_N
Ig_DSCAM-DSCAML_C
VWA_2
FN3_Tor_3rd
Motif
Other DBs
NCBI-GeneID:
112159283
NCBI-ProteinID:
XP_024149039
Ensembl:
ENSOMEG00000011954
LinkDB
All DBs
Position
LG7:complement(30299229..30342526)
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AA seq
1643 aa
AA seq
DB search
MAPRPFQDAPPPPLPDPQVGRNAFPPCWIIRALTLVWNVSSRFPGGMNPDSLNLQVLLMS
PLKLSSASSRLWLMLCFLLAVLLLSSEVHGQGRLKLTVLSEDRLQMKWKEADAPVQGYKV
RVRPISDETQLELMLTTTRGRATVAGLDSSQEYSLQVFVLNGTMEKLLAKRRFTMEHLRE
DKVIRSGIPKEKRKLLPGGSGSGDLEEATDGPPDLPTVLYSYPITIATTTTAANADPATP
ETTLRILDEAPGRAPKEKRKKKKEKERDESNMENNEEHRKEDGKLNQDKPKKSQFPTQSV
TGSSPRKPFKCSSEAAADIVLLVDGSWSIGRTNFRRVRDFLEALMTPFRIGPDHIQISLT
QYSGDPRTEWNLGTFSNKEQLLEGVRNFRYKGGNTFTGQALLHVMEKNLRAEAGARTDTP
IFLVLLTDGKSQDDAITAADRLKRAGVEIIAVGVKNADEAELRQMASEPVDLNVYNVNDF
PLLSKLVSRLVHILCSRIEDRGVKKRAEPRATVDPALLFPSPADLRFSQLGSREVKLHWT
NPAKPVQQYRVVYHSTEGPSPQEVVLPGSESTVLLDGLSAQTLYHLSIFPVYANNVGLAL
RGTVTTLPLAMPADLAVTPSSYSSLGVSWSPAAGATQYMILYSALSDGEPDDAKEEKFSA
DQTVVELKGLLPATDYSVTLYALYDEDPSDPVTSVASTLPLPAPLSIQFPLVTHSELRVS
WVPGALGVPGHRITYSTNHGSDVKRVEVSGLNSVLVQNLSSLSRYLVSVQSHYPQGLSAS
LTSNITTLKVPSPSDLRVTNFSGSDITVRWEAAADDVVLYLIKWISLSGGDLRQLRVNGA
SEGAVLEGIEDDKEYQISLSALYGDGAQSEAVATRYSTLSGGGPSAVTVSEETPISMLVS
WEPPNAHVLQYRVSYTALSGAESHDSSVLVKGDEKRVVLKSLQPDTRYSILVSAEYRSRE
GGSGSAQGKTTSLRVSSVSVVKLDHTSICVSWRRVSAVDGYRITIQSVKDKQTKEETLDE
SSSSHCFTELEPETLYRISVRSLLGSAEGAAVSILHPTAAAPAKIPIHPRMYPIHNEVCP
EVTIRNSIIKGFDMMEAFGLTQTAHSTVEGVAAEPFVFSALPTYTLYKDVQLTQSTKFIH
PAGFSPEHTISIAFRLLQDSPKEPFALWQLTDDDFQPKMGLVIDPSTKLLQYFSLDYRGE
VQQLTFDQPQVHRLFYGSFHKVHLSVSQVSVSLSVDCQHVGERPARPMGSLPTDGFEMLG
KLVKTRGPNSGSASFQLQSFEIVCNTTWASEDTCCDLPAVRDEESCPPQAHTCTCSSDIP
GAPGDPGPIGKPGPRGEKGEKGELGQKGEVGPPGKSGSEGGLGPVGSVGPRGITVQGKMG
PPGPRGERGDPGRPGVQGLPGPPGPKGEEGIPGPKGIRGVEGNIGPSGTTGPRGLQGIPG
HPGPVGERGPSGPVGPSGLPGSKGERGEKGEPQSMAVIYQLVTQACEQLVHKEVLKLDAY
INKISQKPAPVEEPVGPPGEPGIPGPRGPPGARGSQGNVGPRGRAGRPGYPGEQGRRGVL
GSKGDPGNNIQGSPGIKGFAGSSGESILGDPGPKGNDGKPGPPGIPGPSGQPGEIGPPGV
CDNSGGCQKIPPQTEDSYYGYQP
NT seq
4932 nt
NT seq
+upstream
nt +downstream
nt
atggcgccccgcccctttcaggacgccccgcccccgcctcttccagacccgcaggttggg
aggaacgcatttcctccctgttggatcattcgcgccctgaccctcgtctggaatgtctcg
tcccgtttccctgggggaatgaatccggactcactgaacctacaggtcctgctcatgtct
cctctcaagctgagctcagcttcatcccgtttgtggctgatgctgtgtttcctgctcgct
gtcctgctgctgtcctcggaggtccacggtcagggtcgtctgaagctgacggtcctgtct
gaagacaggctgcagatgaagtggaaagaggctgacgctcctgttcagggctacaaggtc
cgagtcagaccaatttcagacgaaacacagctggagctgatgctgaccaccacccggggc
cgggcgactgtggcaggtctggactccagtcaggaatattccctccaggtctttgttctc
aatggaacgatggagaaacttctcgcaaagagacgttttaccatggagcacttgcgggag
gataaggtgatccggagcggcatccccaaagagaagaggaagttgctgccgggcggatcc
ggttctggagacctggaggaggcaacagacggtccgcctgatctgccaacagttctgtac
tcttaccccataacaatcgctaccacgacaactgccgccaacgcagatccagcaactcca
gaaaccaccctcaggatcctggatgaggccccggggagggcccctaaagagaaaaggaag
aagaagaaggaaaaagagcgtgatgaatccaacatggagaataatgaagagcacaggaaa
gaagacggaaaactgaaccaggacaaacccaaaaagtctcaatttccaacccagtcagtt
acaggttcgtctccaaggaaaccttttaagtgcagcagcgaagcagctgcagacatcgtg
ctgttggtggatggctcctggagtatcggacgcaccaacttcaggcgggtcagagacttc
ctggaggccttgatgacaccgttccgtattggaccagatcacattcagattagcttgact
cagtacagtggggacccccggacagagtggaaccttggcaccttctccaacaaagagcag
ctgctggaaggagtacgaaacttcaggtacaaaggcgggaacacgtttacaggacaggcg
ctgcttcacgtcatggagaagaacttgagggccgaggcaggcgcaagaacggacacgccc
atttttttggtcttgttgactgatggtaaatctcaggatgacgccatcactgcggcggac
cggctgaagagagcaggcgtggagatcatcgctgtaggtgtgaagaacgcagacgaagct
gagttgagacagatggcgtcggagccggtggatctgaacgtctacaatgtcaacgacttc
cctctgctcagcaagctggtgtcacggctggttcacatcctgtgttcgaggatcgaggac
cgtggcgttaaaaaacgagcagagccacgggcgacggtggacccggctctcctgttcccc
agcccggcagatctacgcttctctcagcttggatccagagaagtgaagctacactggacc
aaccctgctaaaccagtccagcagtacagagtggtgtaccacagcaccgagggtccgagt
ccccaagaggtggtcctgcctggttctgagtccacggtactactggacgggctctcggct
cagacactctaccacttgtccatcttccccgtgtacgcaaacaatgtcggtttggcgctc
agaggaaccgtcacaacgttgcccctggccatgccggcagacttggcggtgacgccttct
tcatacagttcgttaggggtgagctggagtccggccgccggcgccactcagtacatgatc
ctgtactcagcactcagcgatggagaacctgacgacgccaaggaggagaagttcagtgct
gatcagacggttgtggagctgaaagggttactgccagcaaccgattactccgtcaccctc
tacgccctgtatgatgaagaccccagcgatcctgtcacgtctgttgcctccacactccca
cttccagctccgctgagtatccagttcccgctggtcacccacagcgagctgagggtcagc
tgggtgcccggcgctctgggtgttccgggtcacaggatcacctacagcactaaccacggc
agcgacgtcaaacgggtggaagtttccggcctgaactcagttttggtgcagaacctctcg
tctctgtccagatacctggtttcagtgcagtctcattacccacaaggcctttctgcttcg
ctcaccagtaacatcaccacactgaaggtgccgtccccgtcagacctcagggtgactaac
ttctccggcagtgacatcaccgttcgctgggaggcagcagctgatgatgtggttctgtat
ctcatcaagtggatctccctcagtggaggagacctgcgacagctgagggtgaacggagcc
agtgagggggccgttctggaggggatagaagacgataaggaataccagatctctctgtct
gctctgtatggagacggagctcagagtgaagcagtggccacacgctacagcaccttatcc
ggcggaggcccgtcagccgtgacggtctcagaggagactcccatcagcatgctggtcagc
tgggaacctcccaacgctcacgtcctccagtaccgcgtctcctacacagcgctgagcgga
gcggagagccatgacagctctgtgttggtgaaaggggatgaaaagcgggtggtgctgaag
tcgctgcagcccgacactcgctacagcatcttggtctccgcagagtatcgcagcagggag
gggggcagcgggtcagctcaaggcaaaaccaccagtttgcgggtcagcagtgtgagcgtg
gtcaagctggaccacaccagcatttgcgtgtcatggaggcgggtgtctgcggtggacggc
tatcgaatcaccatccagtccgtcaaagacaagcagaccaaagaggaaacgctggacgag
tccagcagcagccactgcttcactgagctggagcccgagacgctttaccgcatcagcgtg
cgctcgctgctcggctcagcagagggcgctgccgtgtccattctccatccaaccgctgca
gctccggccaaaattcccatccatcccaggatgtatcccattcacaatgaagtttgtcct
gaagtgaccatcagaaacagcatcattaaaggctttgacatgatggaggcgttcggtctg
acgcagacagctcattcgacagtggagggcgtggcggcggagcctttcgtctttagcgct
ctccccacatacacgctgtacaaagacgtgcagctcactcagagcaccaagttcattcat
cctgcaggtttctctccggagcacaccatcagcatcgccttccgtctgctgcaggactcg
cccaaggagccgtttgctctctggcagctcaccgacgatgacttccagccaaagatggga
ctggtgattgacccttctacaaagcttctacaatacttcagtctggactacaggggggag
gttcagcagctgaccttcgatcaaccgcaggtccacaggctcttctacggcagcttccac
aaggttcacctttctgttagtcaggtgagcgtgtccctgtctgtggactgccagcatgtg
ggggagaggccggcccgcccaatgggcagcctgcccactgacggctttgagatgttgggt
aagctggtgaagacccgagggccgaacagcggatccgcttcgttccagctgcagtccttt
gagatcgtctgtaacaccacgtgggcgtcagaagacacgtgctgtgacctgcctgctgtg
agagacgaggagagctgccctccccaagcacacacctgcacctgctcctcggacattccc
ggagctcccggtgaccccggaccaatcggaaagcctggacctcggggggagaaaggggag
aaaggagagctgggccaaaagggggaggtgggtcctccaggaaagtctggatcagagggc
ggacttggacctgtgggcagtgttggccccagaggcataacggtgcagggcaaaatgggg
cctccaggaccgcggggggagaggggagatcccggccgaccgggagtccagggtttacca
ggacctccaggtcctaaaggagaggaggggataccaggcccaaaggggatcagaggtgtt
gaagggaacatcggcccttcagggaccaccggacccaggggtctccagggaatcccagga
cacccgggtcctgtcggagaaaggggcccatcaggacccgttggaccttcgggtctgcct
ggaagtaaaggagaacgaggtgaaaagggggagccacagtcgatggcggtgatctatcag
ctggtcacacaggcctgcgagcagctcgttcacaaggaggtgctaaaacttgatgcatac
atcaacaagatcagtcagaagccggctccggtagaggagcctgtgggacctccaggtgaa
cctggaattccagggcctcgaggcccaccaggagctcggggatcgcaagggaatgtcgga
cccagagggagagctggaagaccgggatatcctggagagcaggggcgtagaggtgtcctc
gggagcaagggtgatcctgggaacaacatccagggatctccagggatcaaagggtttgca
ggttcttcaggtgaatccatccttggagatcctggtcctaaaggaaacgatggaaagccg
ggacctccagggatccctggaccgtctggtcaaccaggtgaaattgggccaccgggtgtg
tgtgacaacagtggaggctgccaaaaaattcccccgcagacagaagactcttattatggc
taccagccatga
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integrated database retrieval system
