KEGG   Oryzias melastigma (Indian medaka): 112159335
Entry
112159335         CDS       T07439                                 
Symbol
rbl1
Name
(RefSeq) retinoblastoma-like protein 1
  KO
K04681  retinoblastoma-like protein 1
Organism
oml  Oryzias melastigma (Indian medaka)
Pathway
oml04110  Cell cycle
oml04218  Cellular senescence
oml04350  TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:oml00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   04350 TGF-beta signaling pathway
    112159335 (rbl1)
 09140 Cellular Processes
  09143 Cell growth and death
   04110 Cell cycle
    112159335 (rbl1)
   04218 Cellular senescence
    112159335 (rbl1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:oml03000]
    112159335 (rbl1)
Transcription factors [BR:oml03000]
 Eukaryotic type
  Other transcription factors
   Pocket domain Rb
    112159335 (rbl1)
SSDB
Motif
Pfam: RB_A RB_B DUF3452 TFIIB Rb_C
Other DBs
NCBI-GeneID: 112159335
NCBI-ProteinID: XP_024149115
Ensembl: ENSOMEG00000017508
LinkDB
Position
LG7:25319505..25339339
AA seq 1052 aa
MRGEESSDSESGRMEESSVRRSLEVLCQELNMDEQTASEAMENFSSIWNTYTLEGEVVHW
LACSLYAACRKGSTPTVGKGLMEGNCVSLTRILRSSKLSLIQFFSKMRKWADMSNLSQDF
RLRMDRLERNFEVSTVIFRKFEPIFMDMFQNPQGSEPPRQPRSRKHRRLPCHISDVFKFC
WTLFVYTKGNFRMIGDDLVNSYHLLLCCLDLVFGNALLCANRKDLINPSFRGLPPQYRTD
GHVLPDEPPPCVLERLCELHDGLVVEAKGIKQHYFKPYIQKLFQRQILKGNPDLLTELLD
PQNFIDNNKAINREYEEYVLTVGDFDERVFLGADADEEIGTPRKVPPDRSAGPMQHSVEK
PASLAPSTPLTGRVYLKEKDLLVTPVSSATQSVSRLQSMVAGLRTAPSENLMQIFKTCSR
DPSGSVLARVKSLGQTFKEHYTNDSEDSPGSHIDFAENRLKLAEILYYKVLENVLVQETK
RLQGRDMSALLEQDIFHCSLMACCLEVVLFSYSSQRTFPWIIQVFKLAPFYFFKVIEVFI
RSEEGLSRDMVKHLNSIEEQVLESRAWTADSALWSALEAAGNKVPSVEEVNFSSCLDSGS
SNGVQPHLPLAAHSPIIHPRIREFRAGLGSARKEVPPSPLSVHDRYSSPAAGSAKRRLFG
DDPPAPSVGLTSPAGPLPSPAKKLTFSSSGSTTLKIGGQGAQTTVVSLPLQGVSSDRTFT
LIPVSSCDSSGVVTAQFLLTSSPSRPAAVAMTTEPQAGSGRPRRTGSLALFFRKVYHLAS
VRLRDLCMKLDISSELRGKIWTCFEHSLVHCTDLMKDRHLDQLLLCSIYIISKITKETHT
FQDIMKCYRSQPQASSYVYRSVLIRRTPKDLSADENMEEGSASEEDSAKKTNQLPGNPNP
MEEERGDLIQFYNAVYVVKMKSFALRYATSENQADAPPLSPFPSVRAQPLSPRRVSQSHS
LYVSPHKNSPGCFSPNSYTYRINSSPSKDLSDINRMIRQGSASRKRAFTMEGDVTMASAC
DSPSKRACPENGGSPDVLLKRLQDVVSERQSH
NT seq 3159 nt   +upstreamnt  +downstreamnt
atgcgaggggaggagtcttcggattctgagtcggggaggatggaggagagttcggtccgg
aggagtttggaggtgctgtgtcaggagctgaatatggacgaacagacagccagtgaggcc
atggagaacttcagctccatatggaacacatacacgctggagggggaggtggtccactgg
ctggcctgctctctatatgcggcctgcaggaaggggtccacccccaccgtggggaagggg
ctgatggagggcaactgtgtgtccctgaccaggatcctgcgctcctccaaactcagcttg
atccagttcttctctaagatgaggaagtgggccgacatgtcaaatctgtcacaagacttc
cggcttcggatggaccggctggagcgaaactttgaggtttccactgtgatcttccgaaag
tttgagcccatcttcatggacatgttccagaaccctcagggcagcgagcccccccggcag
ccccgcagcaggaagcacagacggctgccctgtcacatcagtgacgtcttcaagttctgc
tggactctctttgtctacactaaaggaaacttccgtatgatcggcgatgacctggtgaac
tcgtaccacctgctgctctgctgtctggacttggtgtttggcaacgctctgctgtgtgca
aacaggaaggacctcatcaacccgtctttcagaggtctgcccccacagtaccgcacagac
ggccatgttctgcccgatgagccccccccctgtgtgctggagaggctgtgtgagctccat
gatgggctggtggttgaagccaaaggcatcaagcagcactacttcaaaccctacatccag
aagctcttccagagacagatcctgaagggaaacccggatcttctgacggagctgctggac
cctcagaacttcatagacaacaacaaagccattaacagggagtatgaggagtacgtgctg
acggtgggggacttcgatgagcgggtgttcctgggagccgacgcagacgaggaaatcgga
actccgaggaaggtccctccagaccgatctgccggtccgatgcagcacagcgtggagaag
cccgcctccctggctccatccacgccgctgacggggcgggtctacctgaaggagaaggac
ctgctcgtcactcctgtctcctcggcgacgcagagcgtcagccgcctgcagagcatggtg
gcgggtctgaggacggcccccagcgagaacctgatgcagatcttcaaaacctgctccagg
gatcccagcgggtccgtcctggcccgcgtgaagagtctgggtcagaccttcaaagaacat
tacaccaacgactcggaggactctcccggttctcacatagactttgcagagaaccggctg
aaactggcagagatcctttactacaaggttctggagaacgttctggtgcaggagaccaag
cgtttgcagggcagagacatgagtgctctgctggaacaggacatcttccactgctcgctg
atggcctgctgcctggaggtggtgctcttctcctacagctcgcagaggaccttcccctgg
atcatccaggtcttcaaactggccccgttctacttctttaaggtgatcgaggtgttcatc
cgctctgaggagggcctgtccagagacatggtgaagcacctgaactccatcgaggagcag
gttctggagagcagagcgtggaccgcagactcggcgctgtggagcgccctggaggctgcg
gggaacaaagttccctctgtggaggaggtgaacttctcctcctgtctggactcgggttcc
tctaacggcgttcagcctcacctgccgctggcggcccactcccccatcatccacccccgc
atccgggagttcagggcgggtttggggagtgcccggaaagaggtgcccccctccccgctg
tctgtgcacgacaggtacagctctccggcggccggaagcgccaagcggcgtctcttcggc
gatgaccctccagctccgtccgtgggcctgacctcccccgcggggcctctgccctcccca
gccaagaaactgaccttcagctcgagcggcagcacaacgctgaagatcggcggccagggc
gctcagacgacggtcgtgagtctcccgcttcaaggcgtgagcagcgaccgcaccttcacc
ctcatccccgtctcgtcctgcgattcctctggagtcgtgaccgcccagttcctgctgacg
tcatccccgagccgacccgccgccgtcgccatgacaaccgaaccccaggcgggaagcggc
cggccgcggcgcacaggatcgctcgccctgttcttcaggaaggtgtaccacctggccagc
gtccgtctgagggacctgtgcatgaagctggacatctcctccgagctgcgcgggaagatc
tggacgtgtttcgagcactcgctggtccactgcaccgacttgatgaaggaccgccacctg
gaccagctgctgctctgcagcatctacatcatctctaagatcaccaaagagacccacacc
ttccaggacatcatgaagtgttaccgcagccaaccacaggccagcagctatgtgtatcgc
agcgtgctgattcgccggacgcccaaagacctgtcagctgatgagaacatggaggaaggc
tctgcctctgaggaagactccgcaaagaaaaccaaccagcttccaggaaaccccaatccc
atggaggaggagcgcggcgacctcatccagttctacaacgccgtttacgtggtgaagatg
aagagcttcgctctgcgatacgccaccagcgagaaccaggctgacgcgccgccgctctcg
ccgttcccgtcggtgcgggctcagcctctgtcgccccgccgggtctctcagagccactcg
ctgtacgtctccccccacaagaactcccccggctgcttctcccccaactcctacacctac
aggatcaacagcagcccgtccaaggatctgtccgacatcaaccggatgatccgacagggc
tctgccagcaggaagagggccttcaccatggagggggacgtgaccatggcgtccgcatgt
gactcgccaagtaagagggcgtgtccagagaacggcggtagcccggacgtgctgctgaag
cgtctgcaggacgtggtgtcagagcggcagagccactga

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