Oryzias melastigma (Indian medaka): 112159473
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Entry
112159473 CDS
T07439
Symbol
sort1b
Name
(RefSeq) sortilin 1b
KO
K12388
sortilin
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml04142
Lysosome
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome
112159473 (sort1b)
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Gene cluster
GFIT
Motif
Pfam:
Sortilin-Vps10
Sortilin_C
BNR_6
DUF4988
Motif
Other DBs
NCBI-GeneID:
112159473
NCBI-ProteinID:
XP_024149314
Ensembl:
ENSOMEG00000020949
UniProt:
A0A3B3CPY6
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Position
LG7:<6873116..6885437
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AA seq
817 aa
AA seq
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MGLLLQCVLLFCVSALIAGSDFDQKPISQTRSAFVRHPSAEDRTAKIEKRSLTSHRIRRR
RSTEPGDACKTLTGYDSKLADNTHPYIFDDLSGSVSLAWVGDGTGVILALTTYQMPFFLF
KFGQSKLYRSENYGKSFQDVTDLINHTFILSDFGIAIGPEKSGKVILTGEVSGDDKPRIF
VSDDSGKSFTHHDLTFMPLTQMSYNPEDSNVLFVFSSKKELWLSEDFGKSWRKIHDMVCL
VKWGSKNTIYFTTSKNASCSDRGVLELKKTTDYGKTIKTIANKVYSFGRGGRFLFVSVMT
SQDRLRVLHVSVDQGETWNIAQLPAVGHDQFYSILAANDEIVFIHVDEPGDSLFGTVYVS
DDRGTVYSKSLERHLYTTPGGDTDFTNVTSLRGVFITSILAEDNSIQSVVSFDQGGEWVP
LRTPSNVKCKVTATDPDKCNFHIHAAYSMAMKLDVPMLPLSEPNAVGLILAHGSVGDSSS
VIRPDVFVSDDGGYSWIKALDGPHHYAILDSGGLLVAVEHNPSDTIFQIKFSTDEGQCWH
VYNFTTEPIFFTGLASEPGARSMNVSLWGYRDSFISQNWISFTIDFRELLTRDCGDGDYV
QWLAHSDDISDPKDGCMLGFKEKFLRLRKDSVCWNGRDYEVTSQPTPCACTLDDFLCDFG
YYRQENSSKCVEEPNLQHKVLELCLHGKEEQLVTSGYRKIPGDKCEGGEQPKRDEIDLSK
RCVSDMVETLELIGTRSSKSVAIIVAVVVIMLLSIAGGVVFVRKYVCGGRFLVHRYSVLQ
QHVENNAADEMDDPLEINHTQNGKIEFHDDSDEDMLE
NT seq
2454 nt
NT seq
+upstream
nt +downstream
nt
atgggacttctgctgcaatgtgtcctgctgttttgtgtcagcgctctcattgccggctcc
gatttcgatcagaaacccatatcccaaacccggtcggcttttgtgaggcaccccagcgcg
gaagatagaaccgcaaaaatcgagaagaggtctctgacaagccacaggatcagaagaagg
agaagcactgagccgggcgatgcctgtaaaacgctcacgggatacgacagcaagttagcc
gacaacactcatccttacatcttcgatgacctgagtggctcggtgtctcttgcctgggtc
ggagatggcaccggggtcattctggctttgacgacataccagatgcccttctttttgttt
aaatttggacagtccaaactgtatcgcagtgagaactacgggaagtcatttcaagatgta
accgacttaatcaaccacactttcatcttgtctgactttggcattgctattggtccagag
aagtcaggaaaagtaatcctaacaggtgaggtatctggagatgacaagcctcggatattt
gtttctgatgacagcgggaagagcttcacgcaccatgatttgacctttatgcccctgact
caaatgagttacaatccggaggattcaaatgttctctttgtctttagcagcaaaaaggaa
ctgtggctttctgaagattttggcaaaagttggagaaagatccacgacatggtgtgtttg
gtgaaatggggaagtaaaaacaccatctactttacgaccagcaaaaacgcatcgtgcagt
gatcggggagtcttagaactgaagaaaaccacagactacggtaaaaccatcaagaccatc
gccaataaagtctactcctttggtcgtgggggacgcttccttttcgtctctgtaatgacc
agccaggacagactgagggttctccacgtctctgtggatcagggtgagacctggaacatc
gctcagcttccagctgtcggtcacgaccagttttactccattttggcagcaaatgacgag
attgtcttcatacacgtcgatgaacccggagattccctatttggaactgtttatgtatca
gatgaccgcggtactgtttattccaagtcgctggagcgtcacctgtacaccaccccaggg
ggcgatacagacttcacaaacgtcacctccttacgaggagttttcattaccagtattctg
gctgaagataactccatacagtctgtggtgtcttttgatcagggaggggagtgggttccc
ctgaggacgccttcaaatgtcaaatgtaaagtcacagccacagatccagacaagtgcaat
ttccacatccacgcagcgtacagcatggctatgaagcttgacgtccccatgctgcctctg
tctgaaccgaatgctgtgggcctcatcttagcgcatggcagcgttggggactcttcctca
gtgatcagacctgacgtgtttgtgtcggacgatggaggctactcctggataaaggcgcta
gatgggcctcatcactacgctattctggactcagggggacttttggtggcggtggagcac
aacccctctgacaccatcttccagattaaattttccactgatgaaggacagtgctggcat
gtatacaacttcaccacagagcccatctttttcactgggttggcgtcagaaccaggagct
cgctccatgaatgtaagcctctgggggtaccgagactccttcatcagccagaactggatc
tccttcactattgacttcagggaacttctcacccgagactgtggtgacggtgactatgtg
cagtggttggcccactcggatgacatcagtgacccaaaggatggctgcatgctgggtttc
aaggagaagttcctgcgtctcagaaaagactcggtttgctggaacgggcgtgattatgag
gtcacgtctcagccgaccccttgtgcttgcactctggacgacttcttgtgtgactttgga
tactaccgccaagaaaacagctccaaatgtgtagaagagccaaacttgcagcacaaagtg
ttggagctctgtctacatggaaaagaggagcaactggtaactagtgggtacagaaagatc
cctggagataaatgtgaaggaggagagcagcccaaacgtgacgagattgatctcagtaag
aggtgtgtcagtgacatggtggagacactcgagttgatcggaactcgttcttcaaagtca
gttgctataatagtagcagtggtggtgatcatgctgctgagcattgcaggaggagtggtc
ttcgtcaggaagtatgtgtgcggtggcaggtttttggtccacaggtactcggtactgcag
cagcacgtcgagaacaatgccgctgatgagatggacgacccacttgagatcaaccacaca
caaaacggcaaaatcgagtttcacgatgattctgatgaggacatgctcgagtga
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