Oryzias melastigma (Indian medaka): 112159559
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Entry
112159559 CDS
T07439
Symbol
col8a2
Name
(RefSeq) collagen alpha-2(VIII) chain
KO
K23455
collagen type VIII alpha
Organism
oml
Oryzias melastigma (Indian medaka)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C1q
BclA_C
Motif
Other DBs
NCBI-GeneID:
112159559
NCBI-ProteinID:
XP_024149479
Ensembl:
ENSOMEG00000019173
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Position
LG11:complement(7382187..7441623)
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AA seq
688 aa
AA seq
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MLVTMMLASFCFLLTLGGHALAGGYPPMPHMKYMQPMMKGPIGPPFREGKGHYVDMPPMM
EVKGEPGPQGKPGPRGPPGPPGLPGKPGLGKQGLNGQPGPQGPPGLTGIGKPGLPGLPGK
IGPRGIPGLNGEVGPHGEPGPRGLPGQPGLPGPVGLSLNGKPGLPGIRGPPGARGEPGIS
GVPGPPGERGLKGENGNGKPGLPGIIGPPGLKGIRGPPGPPGLGKPGPKGVPGFPGPKGD
NGLPGDQGKPGEPGAPGLQGLPGPVGLGKPGLDGLPGVPGHLGAKGEPGPRGSPGAPGTP
GYGKPGVSGPKGEKGHGGFPGIKGDRGDQGMVGPTGGPGIDGLPGPPGLQGPTGLPGKHG
LPGQKGELGPQGPPGLPGFRGDQGSMGPPGKPGTPGEKGFPGPNGSIGKPGPKGEAGNVG
LPGNPGMTGPQGPKGEPGFIGTPGPRGQSGIPGLQGPMGPMGPQGVPGLRGEPGLPGPPG
LGKLGEKGAIGPQGPPGKPGPTGLNGNPGPPGPPGPPGPPGNGQTVVSGPANTELGGEEI
PGDRKGPVYMQVPLSATVAPAFTAILTTPFPPSSMPIKFDRILYNGQNAYSPSTGIFTAP
LSGVYYFAYHMHVKGTNLWVALYKNNVPATYTYDEYKKGYMDQASGSAVLELKEGDQVWV
QMPSDQANGLYSTEYIHSSFSGFLLCPT
NT seq
2067 nt
NT seq
+upstream
nt +downstream
nt
atgctggtgaccatgatgctggcttcattctgctttctactgacacttgggggacatgct
cttgctggaggctacccccccatgcctcacatgaagtacatgcaacctatgatgaaagga
cccattggacctccgtttcgagagggcaaggggcattatgttgatatgccaccgatgatg
gaagttaaaggggagccaggcccacagggtaaacctggaccaagaggaccccctggtcca
cctggactacccggaaaacctggacttgggaagcaaggactcaacggtcaaccaggtcct
caagggcctcccggcttaacaggaattggtaagcctggacttccaggtctgccaggaaag
attggaccaagagggattccaggactcaatggtgaagttggacctcatggtgaaccaggt
cctcgtggacttcctgggcagcctggccttcctggtccagttggtctgtccctaaatggg
aaacctggacttccaggtataagaggcccccctggtgctcgtggtgagccaggaatcagt
ggtgttccaggcccgccaggtgagcgtggacttaagggtgagaatggaaatggaaagcca
gggctccctggtatcattggccctcccggactgaaaggaatccgaggaccacctggtccc
ccaggtctcggcaaaccaggaccaaaaggtgtacctggattccctggtcctaaaggtgat
aatggacttccaggagatcaaggaaagccgggagagcccggggcaccaggtcttcaaggt
cttcctggtccagttgggttggggaagcctggtctagatggacttccaggagtaccaggc
catcttggtgcaaaaggggaaccagggcctcggggcagcccaggagctcctgggacccct
ggatatggaaaacctggagtgtcagggccaaaaggtgaaaagggtcatggtggatttcct
ggtatcaaaggggacagaggagaccaaggaatggtaggcccaactgggggcccaggtatt
gatggattaccaggaccaccaggacttcaaggtccaacagggctaccaggaaaacatgga
cttccagggcaaaagggagaactaggtccccaaggtcctccaggactccctgggtttaga
ggtgatcaaggctcaatgggacccccaggaaagccagggactcctggggaaaaaggcttt
cctgggccaaatggttccattggaaaaccaggacccaaaggtgaggcagggaatgttggc
ctacctggaaatccaggaatgacaggtcctcaaggaccaaaaggagagcctggatttata
gggactcctggtccaaggggccagtctggtattcctggtcttcaaggtcctatgggtcca
atgggtcctcagggtgtaccaggtttgaggggtgaacctggacttccaggacctccagga
ctgggcaagttgggagagaagggtgcaataggtcctcagggtcccccagggaaaccaggc
cctactggacttaacggtaaccctggcccgcctggtcctccaggaccccctggtcccccg
gggaatggccaaacagttgtctcagggcctgcgaatacagagttgggtggggaggaaata
ccaggagacagaaaagggcctgtatacatgcaagttccgctttctgcaactgtggcgcca
gccttcactgccattctcaccacacctttccctccttctagtatgccaatcaagtttgat
aggatcctatacaatggccaaaatgcctacagtccctccactggcatctttactgccccc
ttatctggtgtctactactttgcgtaccatatgcatgtaaagggaactaacttgtgggtc
gctttgtacaagaacaatgtaccagccacctatacctatgacgaatacaagaaaggctac
atggaccaagcatctggtagtgctgtgttagagctgaaggagggtgaccaggtatgggtt
cagatgccctcagatcaggcaaatggcctctactctacagaatacatccactcctccttc
tcaggatttttactgtgccctacataa
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