Oryzias melastigma (Indian medaka): 112159617
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Entry
112159617 CDS
T07439
Symbol
exosc10
Name
(RefSeq) exosome component 10
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
112159617 (exosc10)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oml03019
]
112159617 (exosc10)
Messenger RNA biogenesis [BR:
oml03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
112159617 (exosc10)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
PMC2NT
HRDC
Lipase
Motif
Other DBs
NCBI-GeneID:
112159617
NCBI-ProteinID:
XP_024149580
Ensembl:
ENSOMEG00000003337
UniProt:
A0A3B3BB36
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Position
LG7:5539173..5552739
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AA seq
891 aa
AA seq
DB search
MSLSKGNGKSKREVLDSNSEANEEEKSELCPGFKDVDAFVKHGFGLVLSATKASAGLPQP
GDEYDFYRSFPGFQEFCESQGDKILHCMSQIMHHHGCRSHVKDQNKLTAVEERFDLVVDS
NDVILERAGILLDEADGVNRNQKPVMPAGFQPPKIVVSSWNRKGSSPSSHSETYRLHHTK
NIARPQLKFKEKIDNSNTPFVPKIFIKPNAVKALPSYFTNKQIRNERPEDLDVPAALADL
IHQQRTQEHVEDMFAHPYQYELDHLTVPDSLLSKPEPQMYKPIAETKLSFINSLEDLVEL
NEKLCKLSEFAVDLEHHSYRSFLGLTCLVQISTRDEDFIIDTLELRSEMYILNEAFTDPT
IVKVFHGADSDIEWLQKDFGLYVVNLFDTHQASRALHLARNSLDHLLKHFCNVDSDKRYQ
LADWRIRPLPDEMVQYARSDTHYLLYIYDCMRVQLLDSNHGQPGLLQSVWNKSRDISLTK
YIKPVFTEDSYLEVLKKQKRSFNTQQLTAFRLLFAWRDKLARQEDESTGYTLPIHMMIKI
SEELPKEPQGIIACCNPVPPLVRQQVNELHLLVQQAREMPLLKAEMATQKKKGLTTVKKP
EVTLFGPHDTSRASETDLPYFSSNEAPVKQGTLFSEDESKMDVDEQKMSGLLASAKITLF
EEPEVHDDQNSPSVTQMKARRIIESFENPFRMYLPSTNVHVNKNAKFDPSSKIFEISKRW
KLQSMEQQQKELEAKQKAKEEAKQQAKKAAEKRTKAKQSYQESLQNVATVRQQAAVSAKR
AAQKIETPASEVGEVTPKPAKKLKSSEKSQKTETPSQTSFKPFDYSQSDLKVFAGTKSKD
NSQFDPNRQGQGFKKKKVPQGQKKHTSAGNRSMSYMAGKSDRGFRHNWPRR
NT seq
2676 nt
NT seq
+upstream
nt +downstream
nt
atgtccctgtctaaaggcaacggtaaatcgaaaagagaagttttagacagtaactcagaa
gcaaacgaggaggagaaaagcgagctgtgtcctggctttaaagacgtagacgccttcgta
aaacatggatttggtctggtgctctcagctaccaaagcatctgctggtttaccccagcct
ggagatgagtatgatttctaccgaagcttcccgggcttccaggagttttgtgaaagtcaa
ggagataagattttgcattgcatgagtcagattatgcatcaccatggctgcagatcccac
gtcaaagaccagaacaagctgacagcagtggaggagaggtttgacttggttgtggactcc
aatgacgttatccttgaaagagcggggattcttctggatgaagctgatggggtgaacagg
aatcagaagccggttatgcctgctgggtttcagcctcccaaaatagttgtttccagctgg
aaccgcaagggttccagccccagcagtcactctgagacgtaccgacttcaccacaccaag
aatatagcccggcctcaactgaaattcaaggaaaaaattgataacagcaacacacctttt
gtgcccaagatcttcatcaagcccaatgcagtaaaggcccttccatcgtatttcaccaat
aaacaaatacgcaatgaaaggccagaggacctcgatgttcctgctgccctggctgactta
attcaccagcagagaactcaggaacacgttgaagacatgtttgctcacccataccagtat
gagctggaccatctcactgttccagacagccttctgtccaaaccagagcctcaaatgtac
aaaccaatagctgagaccaagttatcctttatcaactctctggaggatctggtggagctg
aatgagaagctgtgtaaactgtctgaatttgccgttgatcttgagcatcattcctacagg
agttttctgggcctcacctgtctggtccagatctccactagagacgaggacttcataatc
gacacgctggagctgcgcagtgagatgtacatcctgaatgaagcattcactgaccctact
attgtaaaggtgtttcacggagctgattctgacatcgagtggctccagaaagatttcggc
ttgtatgtggtcaacctgtttgacacgcatcaggctagccgagcgctccacctggcccga
aattcactcgaccacttactcaaacacttttgcaatgtggactcagacaaaagataccag
ctggctgactggaggattcgccccctaccagatgagatggtgcagtacgcccgatcagac
acccactatctcctttacatatatgactgtatgagggtacagctgttggactccaaccat
ggacaaccaggcctcctgcagtctgtctggaacaaaagcagagacatttcactgacgaaa
tacatcaagcctgtgttcacggaggattcatatttggaggttctaaagaagcagaaaaga
tctttcaacacccagcagctcacagccttcagactgctctttgcctggagggacaagctc
gccaggcaggaggatgaaagcaccggatacacactgcccattcatatgatgattaaaata
tcagaggaactgcccaaagaacctcagggcatcattgcctgctgtaaccccgtaccccca
ctggtgaggcagcaggtcaatgagctgcacctgctcgtgcaacaagcccgagaaatgccc
ctgctgaaggcggagatggccactcaaaaaaagaaaggcctgacgactgtgaaaaagccg
gaagttacactgtttggcccacatgatacatccagggcgtctgagactgatctgccttac
ttttcctctaacgaagcgccggttaagcagggcacactcttctctgaggatgagagcaaa
atggatgttgatgagcagaaaatgagtggcctcctggcgtccgctaaaataaccctgttc
gaggagccggaggtacacgacgaccaaaactccccctcagtgactcagatgaaggccagg
cgaatcattgagtcttttgaaaacccttttagaatgtatttaccttccaccaatgtgcat
gtcaacaagaacgccaagtttgacccgtcctccaaaatatttgagatcagcaaaagatgg
aagctgcagagcatggaacaacaacagaaagagttagaggccaagcaaaaagccaaagag
gaagcaaagcaacaggcaaagaaagcggcagagaaaagaaccaaggctaaacaaagctat
caggagtctcttcagaatgttgctactgtgcgccagcaggcagcagtatctgcaaaaagg
gctgcacagaagatagaaacgcctgctagcgaggttggagaggtgactcccaaaccagca
aagaaattgaaatcatccgagaagagccagaagactgaaacaccttctcagaccagcttt
aagcccttcgactacagtcagtctgacctcaaagtctttgccggcactaaatcaaaggac
aactcgcagtttgatccaaatcgacaaggccagggttttaagaaaaagaaagttcctcaa
ggacaaaagaagcacacctcagcaggaaacagaagcatgtcgtacatggctggcaagtca
gatagagggttccggcataactggcccagaagatga
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