KEGG   Oryzias melastigma (Indian medaka): 112159637
Entry
112159637         CDS       T07439                                 
Symbol
kdm5c
Name
(RefSeq) lysine-specific demethylase 5C isoform X1
  KO
K11446  [histone H3]-trimethyl-L-lysine4 demethylase [EC:1.14.11.67]
Organism
oml  Oryzias melastigma (Indian medaka)
Brite
KEGG Orthology (KO) [BR:oml00001]
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:oml01009]
    112159637 (kdm5c)
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:oml03036]
    112159637 (kdm5c)
Enzymes [BR:oml01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.67  [histone H3]-trimethyl-L-lysine4 demethylase
     112159637 (kdm5c)
Protein phosphatases and associated proteins [BR:oml01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     112159637 (kdm5c)
Chromosome and associated proteins [BR:oml03036]
 Eukaryotic type
  Histone modification proteins
   Histone demethylases
    112159637 (kdm5c)
SSDB
Motif
Pfam: PLU-1 JmjC KDM5_C-hel ARID zf-C5HC2 JmjN PHD BREX_BrxC_helical PHD_JHD1
Other DBs
NCBI-GeneID: 112159637
NCBI-ProteinID: XP_024149618
Ensembl: ENSOMEG00000003426
UniProt: A0A3B3BAB2
LinkDB
Position
LG7:complement(17129296..17148264)
AA seq 1581 aa
MDSEEFIPPPECPVFEPSWEEFQDPLGYIAKIRPIAEKSGICKIRPPPEWQPPFSVELDS
FHFTPRVQRLNELEAETRVKLNYLDRIARFWEIQGSSLKIPHIERRILDLFSLSKIVTDE
GGFEMVCKERRWARIAQRLGYPPGKNIGSLLRSHYERIIYPFQMFQSGSCLLPCKPKHYD
GEDVDKEYKPHSIPLRQSVQPSKISSYGRRANRCQPDGPEDLAPHPLTTGSQLISAPEPT
EEDIEKNPELKKLQIYGAGPKMMGLGLVARDKSIRKKDELPQTLTIKDNASPPAAENPVK
SEPLEPELGQNDGSAHNAQPPPPTVIVKKEEIKEEEDKKSDVKGDHMEGPCTKMTMRLRR
NPNNPQCVDSYVCRMCGRGDDDDKLLLCDGCDDNYHTYCLLPPLGDPPKSNWKCPKCVAE
ECKKPTEAFGFEQATREYTLQSFGEMADSFKADYFNMPVHMVPTELVEREFWRLVSSIEE
DVTVEYGADIHSKEFGSGFPMNNGKKVLTEEEEEYARCGWNLNVMPVLEQSLLCHINGDI
SGMKVPWLYVGMVFSAFCWHIEDHWSYSINYLHWGEPKTWYGVPSVAAERLEEVMKKLTP
ELFEFQPDLLHQLVTIMNPNILMAHGVPVVRTNQCAGEFVITFPRAYHSGFNQGYNFAEA
VNFCTADWLPAGRSCIEHYRRLRRYCVFSHEELTCKMAASPEKLDLNLAAATHREMFIIV
QEERKLRKNLMERGITEAEREAFELLPDDERQCDKCKTTCFLSALACSNCPEHLVCLYHT
QDLCNCPTEKLYLRYRYTLDELLAMLHRLKVRSESFDSWANRVKEALEQEDGNKIDIEDL
DKLKLEAAEKKFPDNELLRKLNTVFKDIGSCRQKSAELLSGLSTSERKMTFAELKSLVET
MQNLPCVMNQLEEVQAVLQTVEDYQKRAQVLLNDKDWRKDSPPAEQLQTLLNEGSNLPVV
VPECELLQGLKEQGHWLAEVRHTLGTEGGERQEVTLEVLRSLMEAGCNVPQSVSVETAMA
ELQELLTIAERWEEKAQICLEQRQKHPLSTLEAIVNEAQLIPVTLPNILALQSCLTRARA
WVTDLEEIQNGEHYPCLDDLEGLVAIGRDLPVFMEELRQLELQVASAHSWRDKATKTFLK
KSSPHSLLEVLCPCAKRRENRNEAESSDDPLEDSDTNTLGLSAQALRDPAAIVMAFKEGE
HQEKEALLRLQKANLCKSGLITSTRDNKRWSEADETSVLSETLAKQNGDCNQSRPQTVCV
CAGPPRAPQLRCHLCKEWFHGGCVPFPSLLPSEPSANPLCWWDWDTRFLCPQCQRSRRPR
LETILALLVALQRLPVRLPEGEALQCLTERAITWQGRAKEALEAPEVQQALEKLQELRET
PQHSVKKEEGAGKEPERDSVIVLSDSEGGEGEDGVIDLTKDNSPIKKTESNGTQAGYENG
INKMSNVTDVGSLLPLLPALKGKVVQLSAATKVKLEELQLEGDLLEVSLDQTNTIHRVLQ
AASDPPRDTLHTLIQIEVEEQRRTSHGRAKDSKRKRKGNRGSGETSGERSLDVSKSKKAC
PLQHPSSSSPQMWVQCHPEIL
NT seq 4746 nt   +upstreamnt  +downstreamnt
atggattcggaggagtttattcctcctccggagtgtccagtttttgaaccgtcatgggag
gagtttcaggatcctttgggctacatcgccaagatacggccaattgcagagaagtctggg
atttgcaagatccgacctccaccagagtggcagcctccattttcagtagaactcgacagc
tttcacttcactccccgtgtccagaggctcaatgagttggaggctgaaaccagagtgaaa
ctcaactatttggaccgaattgccagattttgggagattcaaggatcttccttaaaaatc
cctcatattgaaaggcgcatccttgatctgttcagcctgtcaaaaatcgtgacggatgaa
gggggctttgagatggtctgtaaggagcggcgctgggctcgaatcgcccaaaggcttggt
tacccgccaggcaagaacatcggctccctgctgcgctcgcactatgagagaattatctac
ccgtttcagatgttccagtcggggtcttgccttctgccttgcaagccaaagcactatgac
ggagaagacgtggacaaggagtacaagcctcactctatcccgctgcggcagtcggtgcag
ccgtccaaaataagcagttatggacgcagagcaaaccgatgccagcctgacggtccagag
gatctggccccccatcctctcaccactggctctcagctcatctctgcgccggaaccgact
gaggaggacattgagaagaacccagaactgaagaagttgcagatctatggcgcagggcca
aagatgatgggacttggactcgtggcaagagacaaaagcatcagaaagaaagacgaactt
cctcaaacgcttaccatcaaagacaacgcctcccctccagccgcagaaaacccagtcaag
tctgaaccactggagcccgagctgggacaaaacgacgggagcgcgcacaacgcccaaccg
ccgccccctactgtcatagtgaagaaagaggagataaaggaggaggaggacaaaaagagt
gacgtgaagggagaccacatggaaggaccttgcaccaaaatgaccatgaggcttagacgc
aaccccaacaacccacagtgtgtggattcctacgtgtgtcggatgtgtggacgaggagac
gacgacgacaaactgctcttgtgtgacggatgtgatgacaactaccacacttactgtctc
ctgcctcctcttggtgatcctcctaaaagtaactggaaatgtcccaagtgtgtggcagaa
gagtgcaagaaaccgacggaagcgttcggctttgaacaggcgacgagggagtacactctg
cagagctttggagagatggcggattccttcaaagctgactacttcaacatgccggtccat
atggttcccaccgagcttgtggagagggagttctggagattagtcagtagcatcgaggag
gatgtgactgtggagtacggagcagatattcactccaaagagtttggcagcggcttcccc
atgaacaatgggaagaaggtcctcacagaggaagaagaggaatatgcacgctgcggttgg
aacctcaacgtgatgcctgtactggagcagtctctactgtgccatatcaatggagacatc
tctgggatgaaggtcccatggctttatgtgggcatggtcttctcagccttctgctggcac
atagaggatcactggagctactctattaactacctgcactggggtgaacccaagacttgg
tatggtgttccctctgtagcagcggagagacttgaggaggtcatgaagaagctgacgcca
gagctgtttgagttccagcctgacctcctgcatcaactcgtcaccatcatgaatcccaac
attctgatggctcacggagtaccggttgttcgcaccaaccagtgtgctggagagttcgtc
atcaccttccccagagcctaccacagtggcttcaatcagggatataactttgctgaagca
gtgaacttctgcactgcagactggctccctgctggccgttcctgtatcgagcactaccgc
cgcctcaggaggtattgtgttttctctcacgaggagctaacctgcaaaatggccgccagc
cctgagaaactcgacctgaacctggctgcagccacacatcgggagatgtttatcattgtt
caagaggagaggaagcttcgcaagaatctgatggaaaggggcataacagaggcagagcgg
gaggcttttgagctgctgcctgacgatgagagacagtgtgataaatgtaagaccacatgc
ttcctctcggctctggcctgctccaactgtcccgagcatctcgtgtgtctctaccacact
caggacttgtgcaactgccccactgaaaaactctacctcaggtacagatacactctggat
gagctgttggccatgttgcatcggttaaaagtcaggtcagagtcctttgattcctgggcc
aacagagttaaagaggctcttgaacaggaggatggaaacaagatcgacattgaagacctg
gacaagctgaagctggaggcagcagagaagaagttccctgacaacgaactcctcaggaag
ctaaacactgtttttaaagacataggaagctgtcgacagaaaagtgctgagctcctcagc
ggtttaagcaccagtgaaaggaagatgacgtttgcagagctgaagtctttggtggaaacg
atgcagaacctgccctgtgtgatgaaccagttagaagaagtgcaggcggttctgcagacg
gtggaggactaccagaaacgagcacaagtgctgcttaatgacaaagactggaggaaggat
tctcctccagctgagcagctgcagactttactgaacgaaggaagcaaccttccggtggtg
gtgccagagtgcgagttgcttcagggcctgaaggagcaaggccactggctggcggaggtg
cggcacaccctcggcacagaaggaggggagaggcaggaagtgacgttggaggtgctgagg
agcctcatggaggcgggctgcaacgtaccccagagcgtgtccgtggagacggccatggcg
gagcttcaggagttgctgacaatagctgagcggtgggaggagaaagcacaaatctgcctc
gagcaaaggcagaagcatcctctctccaccctggaggcaatagtaaacgaggctcagctc
attccagtcaccctccccaacatcctggctctgcagagctgcctgacgcgcgctcgggcc
tgggttacagacctggaggagatccagaacggagagcattacccgtgtctggacgatctg
gaggggctggtagccatcggccgggacctgccagtcttcatggaggagttgaggcagctg
gagctgcaggtggccagcgcacactcctggagagacaaggccaccaagaccttcctgaag
aagagcagtccacactctctgctcgaggtgttatgtccgtgtgcaaaaaggagggagaat
cggaatgaagcggagtcgtcggatgatcccctggaagactctgataccaacactctgggg
ctgtccgctcaggctttgagggatcctgcagctatagtgatggctttcaaagaaggcgag
caccaagagaaggaggccctgctgaggttacagaaagcaaacctgtgcaaatctggacta
atcacctcaacgagggacaacaagcggtggagtgaagccgatgagacgtctgtcctctcc
gagaccctcgccaaacagaacggcgactgtaaccagagccgtcctcagactgtgtgtgtg
tgcgccggcccgccccgcgctcctcagctccgctgccatctctgcaaggagtggttccac
ggcggctgcgttccctttccctccctgctgccctctgaaccgtcagccaaccccctttgc
tggtgggactgggacacgcgcttcctgtgtcctcagtgccagcggtcgcggcggccacgc
ctagagactatcctggctctgctggtggccctgcagcggttacccgtgcgcctgccggag
ggggaggccctgcagtgtctcacggagcgagccatcacatggcagggccgagccaaggag
gcgctggaggcgccggaggtgcagcaggctctggagaagctgcaagaactcagagaaacg
ccgcagcacagcgtgaagaaagaggaaggtgcagggaaggagccggaaagggattcagtc
atcgttttatcagactctgaaggaggagaaggagaggatggggtcatcgatctcactaaa
gacaactctcctataaagaaaacagaaagcaatggtactcaggctgggtatgagaacggt
atcaacaagatgtcaaatgttacagatgtggggtctctgttgcccctgctgcctgcactc
aaaggcaaagtggtgcagctctctgcagccaccaaggtgaagttggaggagctgcagctg
gaaggagatcttctggaggtttccctggaccagacaaacaccatccacagggtcctgcag
gctgcctcagatccccccagagacactctgcacacgctcattcagatcgaggttgaggag
cagaggcggacgagccacggacgagccaaggactccaagaggaagagaaagggcaacaga
ggcagtggggaaacatcaggagagcgctcgctggatgtctccaagtctaagaaggcgtgt
cctctccaacacccctcctcctcctcgccgcagatgtgggtccagtgccatccagagatt
ttgtga

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