KEGG   Oryzias melastigma (Indian medaka): 112159668
Entry
112159668         CDS       T07439                                 
Symbol
rpa3
Name
(RefSeq) replication protein A 14 kDa subunit
  KO
K10740  replication factor A3
Organism
oml  Oryzias melastigma (Indian medaka)
Pathway
oml03030  DNA replication
oml03420  Nucleotide excision repair
oml03430  Mismatch repair
oml03440  Homologous recombination
oml03460  Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:oml00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    112159668 (rpa3)
   03420 Nucleotide excision repair
    112159668 (rpa3)
   03430 Mismatch repair
    112159668 (rpa3)
   03440 Homologous recombination
    112159668 (rpa3)
   03460 Fanconi anemia pathway
    112159668 (rpa3)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:oml03032]
    112159668 (rpa3)
   03400 DNA repair and recombination proteins [BR:oml03400]
    112159668 (rpa3)
DNA replication proteins [BR:oml03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RPA (replication protein A)
    112159668 (rpa3)
DNA repair and recombination proteins [BR:oml03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    RPA (replication factor A)
     112159668 (rpa3)
   MMR (mismatch excision repair)
     112159668 (rpa3)
  DSBR (double strand breaks repair)
   HR (homologous recombination)
     112159668 (rpa3)
SSDB
Motif
Pfam: Rep_fac-A_3 Methyltransf_5
Other DBs
NCBI-GeneID: 112159668
NCBI-ProteinID: XP_024149661
Ensembl: ENSOMEG00000007429
UniProt: A0A3B3D991
LinkDB
Position
LG13:29308215..29310631
AA seq 122 aa
MAGIIDVPKPRVNCSMLQQHINKAVCFVARVSKVHPSGKSFTALDGEGKTVTVELNEPLE
EELSGVVEVIGMVSNKGVLMAATYNLLREDRGTSFDLDLYNEALKVIQDFPQYYPFEAAV
SG
NT seq 369 nt   +upstreamnt  +downstreamnt
atggcaggaatcatagatgttccgaaacccagagttaactgctctatgctgcagcagcac
attaataaagctgtgtgcttcgtggcccgggtttctaaggttcatccctccgggaagtcg
ttcacggctttggatggagaaggaaagacggtgaccgtggagctcaacgagccgctggag
gaggagctgagcggcgtggtggaggtcatcgggatggtgtccaacaaaggagtcctgatg
gccgccacgtacaacctgctgcgagaagaccgcggcacctcctttgatttggatctgtac
aacgaagccctgaaggtcattcaggacttcccccagtactacccgtttgaggctgccgtc
agcggctga

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