Oryzias melastigma (Indian medaka): 112160027
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Entry
112160027 CDS
T07439
Name
(RefSeq) E3 ubiquitin-protein ligase Midline-1
KO
K08285
midline 1 [EC:
2.3.2.27
]
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
112160027
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
oml04121
]
112160027
Enzymes [BR:
oml01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
112160027
Ubiquitin system [BR:
oml04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
112160027
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
COS
SPRY
ANCHR-like_BBOX
zf-B_box
fn3
zf-RING_UBOX
RING_XB3-XBAT31
zf-C3HC4_4
zf-C3HC4
Ig_DSCAM-DSCAML_C
PRY
zf-C3HC4_3
zf-RING_2
Pur_ac_phosph_N
zf-C3HC4_2
zf-RING_5
ZNF512_C2HC
AAR2
NDNF
Motif
Other DBs
NCBI-GeneID:
112160027
NCBI-ProteinID:
XP_036071353
Ensembl:
ENSOMEG00000005159
LinkDB
All DBs
Position
LG2:4894975..4980879
Genome browser
AA seq
689 aa
AA seq
DB search
MDTLESELTCPICLELFEDPLLLPCAHSLCFGCAHRILVSHCATNESVQNIGAFQCPTCR
YVISLSPERGLEGLKRNVTLQNIIDRVQRASSSAGLSLPLPLPAPHSGPNSPCEESSNRL
ALVPVSAAMSNPGSPPEPVQCQFCEQDPPQDAVKTCVTCEVSYCEECLRATHPNKKPFTG
HRLIEPMPDSHLRGLQCLEHDEEKVNMYCVSDDQLICSLCKLVGRHRDHQVAALSDRYEK
LKQALDSNLSNLIKRNNELESLMGKLIQTCQHVEVNASRQEGKLMEECDVLIDIIQQRRQ
IIGSKIKEGKAQRLRKLAQQISNCKQCIERSSALITQADQTLKETDHARFLQTAKSINER
VSMATASTQVLIPEIHLTDTFDTFALDFTREKKLLENLDYLTAPSAPCIREELCTASYDT
ISVHWTSDDEFSVVSYELQYTIFTGQSNIASLCNSLDSWMIVPNIKQNQYTVHGLQSGTK
YVFVVKAINQAGSRSSEPGTLKTNSQPFKLDPKSAHKKLKVSHDNLTVERDETTSKKGHS
QDRFSSQSSYGVVGNVFIDSGRHYWEALIGGSTWYAIGIAYKSAPKHEWIGKNQASWVLC
RCNNSWVVRHNSKELAIEPSPHLRRVGVLLDYDAGYVTFYDAVGSQHLHTFHISFIQPVC
PVFNVWNKCLTILTGLPIPDHLEGLEPSN
NT seq
2070 nt
NT seq
+upstream
nt +downstream
nt
atggacactctggaatcagagctgacctgcccaatctgcctggagctcttcgaagaccct
ctactgctcccctgcgcccacagtctgtgcttcggctgcgcccaccgcatcctcgtctcc
cactgcgccaccaacgagtccgttcagaatatcggcgccttccagtgccccacctgtaga
tatgtcatttccctgagtcctgagcgcggactagagggactcaagagaaacgtcaccttg
cagaacatcatcgacagagtccagagggcctcgtcttcggccggactctctctgcctctg
ccgctgccggcccctcacagcgggcccaactccccctgcgaggagagcagcaaccgcctg
gcgctggtccccgtcagcgccgccatgtccaacccgggctcgcctcccgagccggtgcag
tgccagttctgcgagcaggacccgccgcaggacgccgtcaagacgtgcgtgacgtgcgag
gtgtcgtactgcgaggagtgcctccgggcgacgcaccccaacaagaagcccttcacgggc
caccggctcatcgagcccatgcccgactcgcacctccgggggctccagtgtctggagcac
gacgaggagaaggtcaacatgtactgcgtcagcgacgaccagctcatctgctctctgtgc
aagctggtcggccggcacagagaccaccaggtggcagcactgagcgaccgctacgaaaaa
ctcaagcaagccctggattccaacctgagcaatctgatcaagaggaacaacgagctggag
tctctgatgggaaaactgattcagacttgtcaacatgtggaggtgaacgcgtcccgccag
gagggcaaactcatggaggagtgcgatgtcctgattgacatcattcaacagaggaggcag
atcattggcagcaagatcaaggaggggaaggctcagaggctccgaaagctcgcccaacaa
atttccaactgcaagcagtgcatcgagaggtcttccgccctcatcacgcaagccgaccag
acgctgaaggaaacggatcacgctcgcttcctgcagacggccaagagcatcaacgagagg
gtctccatggcaacggcgtctactcaagtactgatccccgagatccacctgacggacacc
tttgacacttttgcgctggacttcaccagagagaagaagttgttggagaacctggattac
ctcactgctccgagtgctccgtgcataagggaagagctgtgcacggcgtcgtacgatacc
atcagcgtccactggacttctgacgacgagttttccgtcgtgtcctatgagctccagtac
accatcttcacagggcagtccaacattgccagtctttgtaactcactggacagttggatg
atagttcccaacatcaaacagaaccagtacacggtgcacggcctccaaagtggcaccaag
tacgtctttgtcgtcaaggccataaaccaagcaggaagcaggagcagtgaaccggggacg
ctaaagaccaacagtcaaccgtttaaactggatcccaaatctgcacacaagaagctgaag
gtgtcacacgataacctgacagtggagcgagacgaaactacatctaagaagggccacagc
caagaccgcttttccagccagagcagctacggtgtggtggggaacgtctttatcgacagc
gggcgtcactactgggaggctcttattggtgggagtacatggtacgccattggcatcgcc
tacaaatcagcccccaagcatgaatggattggtaagaaccaagcatcttgggtactctgt
cgctgcaacaactcctgggtggtccgccacaacagcaaggagctggccattgagccctcg
ccccacctgcgacgggtcggggtcttgttggattacgatgccggatacgtcaccttctac
gacgccgtgggctcccagcacctgcacaccttccacatctccttcatccagcccgtgtgt
cccgtcttcaacgtgtggaacaagtgtctgaccattctcaccggcctacccatccctgac
cacctagagggactagaacccagcaattga
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