Oryzias melastigma (Indian medaka): 112160054
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Entry
112160054 CDS
T07439
Symbol
nup153
Name
(RefSeq) nuclear pore complex protein Nup153
KO
K14296
nuclear pore complex protein Nup153
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml03013
Nucleocytoplasmic transport
oml03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
112160054 (nup153)
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
112160054 (nup153)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oml03019
]
112160054 (nup153)
Messenger RNA biogenesis [BR:
oml03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
112160054 (nup153)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Nup153
Zn_ribbon_RanBP
Nup_retrotrp_bd
Motif
Other DBs
NCBI-GeneID:
112160054
NCBI-ProteinID:
XP_024150160
Ensembl:
ENSOMEG00000012062
UniProt:
A0A3B3BZH3
LinkDB
All DBs
Position
LG11:15951898..15970647
Genome browser
AA seq
1496 aa
AA seq
DB search
MAATGGGKIRSRRYHIASKPYAKSKQQTGLISRVTDTVKSIVPSWLQKYFKNGDSSEGGE
SLDGSDQNCQVPPLPPNSSEEAPSPLDGRNSPEPSTSTTEPSTSRASLNFQDYVLSRPPL
SRTHLHLTPLDTSSPTFGGSSNLFSQPSTSSAPGPFSTGFSLVKEIKDNLSQHEDDNIST
TSGFSSRASDKDVPTSKTASLPLLWSPEMERTNSGPQPSQSSLKKPSFNLSVFGTSSNST
LNSTVLNSSQLGDSPFYPGKTTYGGAAAVRSSRSRPGTPYQAPVRRQIKAKPAGAQPCGV
TSATARRILQSLERMSSPLADARRIPAASSNLSPSMDVMNMDMSNDQAKRKRMDLALPPV
KKLVVPATASVSGNRSVSFKPTLTPGGFRTLSRSTREKTPTRQSPQLPEENPGPSQSTRS
LGGPVYPLSSTPAPPSVSSGGGKMKRERTTARPSKRTEDDEVTEEPKLPAISLPIAASSL
PTFSFSTPLPPPTTSTSVTSSPEIIAVTPAKEMATNKDPPKALTPPCVPFTFSSPIVKAT
AASPPSYSSSPGFTFSAPVAKLGPSMSNGNLSAPIAAAVKPVTSNKMEDFDGPFKPAKTL
KQGSVLDLLKSPAFASSVASVSPSTITTSQQESPQSTASPSTTTASSSSSSSTGFSNLFK
APEGWSCDVCLVQNKQSDSKCVCCLAPKPNLSSKPTDSNPSPAASVGVENSSISAASSTT
TTTGFGSMFSKPAGTWDCDTCLVVNKPDAVKCVACETAKPGTGLKPSLTFPSAFTTVKTP
PASTTPVSTGASGLGDKFKKPEGAWECDTCLVQNKAEDIKCVACTAAKPGASAGPSSSSS
SSSAPLFGLADKFKQPEGSWECDVCCVQNKAADVKCVACQAVKPGANVEAKAFGSSLGTL
SGATSGSSTSGSSTFGGFKFGTSDSTSGSASASFKFGTLPSSTSSPSGGFKFGVQLGNSS
SETSSKEADGSSGFKFGSSSGGFKFGTSSSDDKKSDQPASEPAFKFGVSSGAMFGSAAAS
TESSAPKGGFTFGLSKPKDETSESASATPPSSSQDKVSIPASSNHTTTENVTTTSATTTK
KSVFERLGESNLATNTSKTPPTFGSLQAGKEPAAPTFAFGKPEEKKEPNASAAPPNFVFG
GASKEKETPAAAAPSGGFSFGKPGGSTEQPPPPYSFGKSAEKSENPTSEAPKPTFNFGQN
AADSAAPPPKQAFSFIASNPNSTTSSTPTPAPSLFSAAAGNSTSTTSAPSAPPSTFLFGQ
PSTTTTSDAAPAKPFVFGNSQEQPAASSGAPVNSAPAQPFIFGAAANPAAPPAASASSFG
FGTTAPSAASTSAPSAAPSPFAFSSAPSSGFGENQTLTFGSTFGTPFPATPSQPPAFGAK
PNATPVFGQQTNSTSVFGTSVNAAPSGGFQFGGASAFGSTNNSTPGVFTFGAGAAASPAP
PANSSMAPQSGAAGGGFNFSQTPAFNIGVAKFSSPSPAVTPAIAGRKIKTAVRRRK
NT seq
4491 nt
NT seq
+upstream
nt +downstream
nt
atggcggccacgggtggagggaaaattagaagcaggagatatcatatcgcttctaaacct
tacgccaagagcaaacagcagacaggcctcatcagtagagtcacagataccgtaaaaagc
atcgttccttcctggctgcaaaaatatttcaaaaatggagattcatctgaaggaggggag
tcgctggacggttcagaccagaactgccaggtgccacctcttcctcccaacagtagcgaa
gaagcaccctctcctcttgatggacgcaactctccagagccaagcactagtaccacagaa
ccctccactagtcgtgcatccctgaattttcaggattacgtgctgtctcgacctcctctg
agtcgtacccaccttcatttaacccctctggatacttcctccccgacctttggaggctcc
agcaacctcttctcccagccttccacctcctcggcccctggacccttttccaccggcttt
tcattggttaaggaaatcaaagacaacctttctcagcatgaagatgataacatctccacc
acaagtggattctcatctcgtgcgtcagacaaagatgtccccacttccaaaactgcatca
cttcctcttctttggtctccagaaatggaaagaacaaactctggacctcaaccttctcag
tctagtttgaaaaagccgtcctttaacctgtcggtctttggcacctcttctaattcaacg
ttaaacagcacagtgctgaactctagccagctcggagattcacctttctacccagggaag
accacgtatggtggggcagcagcagtgaggagctcccgcagtcgtcctggaacaccttac
caggccccagtgagaagacagatcaaagcaaagcctgctggggcacagccctgtggggtg
accagcgccaccgccaggcggatcctccagtccttagagcggatgtcaagtccactggct
gatgccaggaggatccccgcagcttcatccaacctttcaccatcaatggatgtaatgaat
atggatatgtctaatgaccaagcaaaaaggaaacggatggacttggccctccctccagtg
aagaagcttgtggttccagcaaccgcttctgtttcaggaaatcgatcagtgtccttcaaa
ccaactttgacgcctggagggttcagaactctgagcaggagcacaagggagaaaacgccc
acaagacaatcacctcaactacctgaagaaaacccaggtccctctcaaagcacaagaagt
cttggtgggcctgtctaccctctgtccagcacccccgcacctcccagtgtgagctctgga
ggaggcaagatgaagagggagagaaccacagcacggccctccaagcgaaccgaagacgat
gaggtgactgaggagccgaagctgccggccatttctctgcccatcgccgcatcgtccttg
cctaccttcagcttttctactcccctgccacctcccaccacctccacatcagttacctcc
tctcctgagatcatagccgttactcctgcgaaggaaatggccacgaataaggatccacca
aaggccttgacaccaccgtgtgtacctttcacgttttcctcacctatagtcaaagctact
gctgctagccccccttcttattcctcctctcctggttttactttcagtgcgcctgtcgca
aagctgggcccctccatgtcaaacggaaatctatctgcacccatcgctgcagccgtgaag
ccggtaacgagcaacaagatggaagactttgatggacctttcaaaccagccaagacgctg
aagcagggcagcgtgctggatctgctcaagtctcctgcttttgcctcctctgttgcttcg
gtttctccaagcacgatcaccacctcccagcaggaatctcctcagtccaccgcctcgccc
tccactacgacagcctcttcatcctcatcttcatcaacaggatttagtaatttgtttaaa
gctccagaaggctggagctgtgatgtatgcttagttcagaacaaacaatcagattcaaag
tgtgtgtgttgtttggcccccaaacccaacctctcctccaaacctacggacagtaatcct
tcgcccgccgcttctgtcggggtggagaacagcagcataagcgccgcctcctccactacg
accacgactgggtttggttcaatgttctccaaacctgcgggaacctgggactgtgacacg
tgtcttgttgtgaacaaacccgacgcggtgaagtgcgtggcctgtgaaacggccaagcct
gggaccgggctcaaaccctccctgacttttccctccgcgttcacaactgttaagacgccg
cctgcatccacaacccccgtttccactggtgccagtgggctaggagacaaattcaagaaa
ccagagggagcgtgggaatgtgacacgtgtttggtacagaacaaagcagaagacattaag
tgtgtagcctgtactgctgcaaaaccaggtgcttcagcagggccttcctcctcctcatcg
tcaagcagtgccccactgtttggattggcagacaagttcaagcagccagagggatcatgg
gagtgtgatgtctgctgtgtgcagaataaggctgcagatgtgaagtgtgttgcctgtcaa
gcagtgaaacctggcgctaatgtagaagccaaagcctttggttcatctttgggcaccttg
tctggtgccacatcaggatcctccacttcaggctcttctacttttggaggttttaaattt
ggcacatcagacagcacatccggatctgcatctgcaagctttaagtttggaacgttgcct
tcttccacatcttctccatctggtggattcaaatttggggtccaacttggaaactcctca
tcggagacgtcctcaaaagaagcagatggctcatcagggtttaagttcggctcctcctct
gggggttttaaattcgggacttcctctagcgatgacaaaaagtctgaccagcccgcctca
gagccagctttcaagtttggagtcagtagtggggccatgtttggaagtgcagcagctagc
acagagagcagcgctcctaagggagggttcaccttcggactgtcaaaacctaaagatgaa
acatcagaaagcgcctcagccactcctccttcctcctcgcaggacaaagtcagcattcct
gcatcatcaaatcacaccacaacagaaaacgtaaccacaaccagtgccacaaccaccaag
aaatctgtattcgagagattaggtgaatcaaacctggcaaccaacacgtccaaaacaccc
cctacatttggatcattacaggcaggcaaagagccagcagctcccacttttgcctttgga
aagccagaggagaagaaggaaccgaatgcctctgcagctccgccgaactttgtgttcgga
ggtgctagtaaggagaaggaaactccagctgctgcagctccttcaggaggtttttccttt
gggaagccgggaggttcaacagaacaacctccgcctccttattcatttgggaagtcggca
gaaaagagtgaaaatcccacctcggaggcaccaaaacccacattcaactttggacaaaat
gctgcagattctgctgctcctcccccgaaacaagcgttttctttcatagcgagtaatccc
aacagcaccacctcatccaccccaacccctgccccaagtttgttcagtgctgctgccggc
aacagcaccagcaccacttcggccccctcagccccgcccagcacttttctgttcggacag
ccctctacaaccaccaccagtgacgccgctccagcaaaacccttcgtctttggcaacagc
caggagcagccggcggcctcctcaggcgctcctgtgaactcggccccggctcagcctttc
atctttggtgctgcagcaaaccctgccgcacctcctgctgcgtctgcttcctcctttggg
tttggaacaactgcgccctctgctgcctcaacatcagcaccatctgctgctccctcccca
ttcgcattcagttctgccccctctagtggttttggagagaaccagactcttacgtttggg
tccacctttggaactcctttcccggccacgccctcccagccaccagccttcggggccaaa
cccaacgccacgcctgtctttggccaacagacaaactccacctctgtttttgggacttct
gttaacgctgctccaagtggaggcttccagtttggaggagccagtgcatttggatccaca
aacaattctacccctggtgtgtttacgtttggagctggagctgcagcttcaccagcacct
cctgccaactcctccatggcgccccagtcaggagcagctggtggtggattcaacttttca
caaacccctgcgttcaacatcggggtagctaagttctcctccccatctccagcggtgacg
ccagcgatcgccggccgcaagatcaagactgccgtgcgacgccgaaaataa
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