Oryzias melastigma (Indian medaka): 112160272
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Entry
112160272 CDS
T07439
Symbol
utp20
Name
(RefSeq) small subunit processome component 20 homolog
KO
K14772
U3 small nucleolar RNA-associated protein 20
Organism
oml
Oryzias melastigma (Indian medaka)
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
oml03009
]
112160272 (utp20)
Ribosome biogenesis [BR:
oml03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
112160272 (utp20)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UTP20_N
UTP20
UTP20_C
HEAT_GCN1
Motif
Other DBs
NCBI-GeneID:
112160272
NCBI-ProteinID:
XP_024150464
LinkDB
All DBs
Position
LG23:complement(1411603..1445617)
Genome browser
AA seq
2776 aa
AA seq
DB search
MKIKSKSSYHKSENTFRFLTFAERLAKVNIDVIHRIDRTGSFSEEVETYFSEGLMKWRDL
NLTEHFTTFLREVSSKSQSFNLLVFHQKSIVESLQTHLAVKDSLAFQPLLDLVVQLARDL
QTDFYPHFPEFFTLITSLLETKDTELLEWAFTCLSYLYKYLWRLMVKDMTNLYSLYSTLL
AHKKEHIRNFAAESFSFLMRKVPDLDALLTHMFSDLEQHPEKVEGAGQLLFEMCKGVRHM
LHSCAATAFPAVLRKLGPITSPAASLPWDAVRDAVDHMLQTAAAHVHREHFQVLWESLQV
SLEEVFGVVEAGGEDPEPAMEQLERLLFVLHTLVSHKGGAKVTQPEAVCQTALRLIQSAS
LRTSCSRLLLQITSSLLLGENVTLQGGVIAEVIQKVFSSSMEQDLILEFTKEMLSMNQFE
QLFLPSLLRYTAALLSCCDAPSRHGALEALVHLILTKAPPPSDGALAFETYPLLFNGATT
EAPPGELLSVPQQVLALIPEEQSGATTDLSLPWAALVLLPHLRPLPAAQVVPAVAAFLNH
LLDQIQTDLLGKAGLFVARQALSCLLSLDGSAHILSLLSVDAVNAVLRKFPSDPSALLFA
DLYYTRLSLCGVSEHLSHNALLELYQMLHANLSSNVSKIRLLTLRIFCQFEAELPAQVEG
EESVEVQPVFAVCMQAEVVPASVQDYRDKLLHLRKLRHDLVQRSLPNGPPGTFQQVPLRF
LVAMLFVNFRPLWDAVIELIVSHARGMDNKDFWRVFHEHLEMVAGLAEKELQDDDEEEER
EGEEPGCDVIESGDVGVLFLEQLKLNSDPYDRTDFPNFRGLLWRAMAQFPERVEARSREL
SPLLLRFIRNEFYPTDLLVAPTQDLRKTKDAAQEETEKEEEDEEEVEGDGKPQRKALPRR
AAAKQLITHLKVFAKFTNPRALYLESSLSQLYHQLLCHQDQQIQRVALECVLTYKDPNLL
PYKENLERLLEDKHFKEEMVHFNISEETGVVDASHRGQLIPVLMRILFGRLRSKAGSKFQ
GKSSAGVRSSIILRFLAGCQAEELGMFIDLLLEPVKHHSRGSCLEAVQRAVSDTDPAAVL
PLGRQHSLLNILDVVIHKLGHLIHVYLPRVLQVLLCVTASVSAVLDGREQLRPGCISPLK
NLRRLGILKIQDFFDGFDSYSFSPDEIDAVFQAVVWTQVCRLPTESPYSPTPLLKLIHVW
CKNARYFPLLAKQKPDHPQCDVLLNVFALLSAKNASPATVAMVMDIAESLATAEDFVPSD
TETALDVNGCVFPQPEEGAGLTPECLSQGCRLLLPHISTLLLYFNGVVRNTDRLRKKKFR
AQVSKELNILSKISRFVSDKEQSSVLISLLLPFLLKGNNAQETEIDILATIQNLLRQCER
PSAFLRPLSKLFAVIHNKLPRKALTAVFQTLSDLDASLSYITELAAKLNAFDSRHLDEVY
FDVRLTAFQDATRRVRDLQSLDLDLISTIVYNCFHTYEIGDMSLADNATLCLSTVIGRLA
AVGPGEQIYRDLIQHTILDAVLKGLRSKTESVQHEYTSILACLVKNFPSRKEFRDLVQLT
DYNDPESDFFEHMKHIQIHRRGRALRKLAKQLSEGTVTMSPRSLQNYVMPYAMTALLDEK
MLKHENMTSASVEVVGAVCRRLTWSKYLYYLKHFIHILQTGQTEQKLAVSLLVTILQSFH
FDHQTLSREMEAAKAREVGMTEPEEEEAADEVDGSDEEDAMETDGKTDDVPMETEAAEGE
GGGPAEEKSKAKGKTGRSAVPSGLPQSREELEALVSAIHQTVNDSVLPRLHKCLTAKVQR
DQEHKAVKSKDVKDEEVARIPIAFAMVKLMQTLPPHIMEANLPGILIKVCVLLRNRFQEI
RDVARGTLVKILETLGFRFLHYLLKEMQAVLVKGYQVHVLTFTVFQLLSALSPTLKSGEL
DPCMSMLIDIFNNELFGSVAEEKEVKGIVSKLMEARHSKSMESYELLARFCSRESITKLI
LPLKEILETTSSLKVCNRVTAVLRRLVMGLLVNAGMTSQDILLLSHSLISQSLPLLTKRD
REKASTKPPPDPRLPPPSCLLLPPTPKRGGVKAPVSSRTNMHILVDAGLKLLHLSLKKSK
VTSSEPSALEMLDPFVLLLLECINSMHVKVITEALIAFTWLLKFPLPAVAQNAEQLTKQL
FVLLKDYSKAGAARGENYHLVQNCFKAVTILVKNVKSNKISETQLQVLLGYAEEDIYDQS
RQATAFGLLKAILSRKLVVPEMEDVLKKVATLSITGGNGMIRVHCRQIYLKYLLDYPLGK
KLKNHLDFVVAQLQYEHDTGRESALEMLAYIFQTFPQNLLFKHCSLFFVPLALVVVNDDS
AKCKKMAAMAIKTLLTHLDLNHQNTLFSFVTTWLKSEKTSLRRLGAQICGLYVEVEEEEF
SSRLEELLPLLEKEIHPDNYEDIEEEQDERGADRLLFSQLTLLAKLCKHVSLLELSKPAE
TLRHIWSHIEAHLRHPHCWVWLTASQIFGQLFAAQPAEKLVAAWKEGGGHASSIATGFIT
SNLDKKMRELALSFCHQLQSKFLDTPSGEQVIKNLLYVGKVIYLISSESDIQEKEQGEPE
DRDSDDEEEKKEQEKEAEEEEDRDNRPPSLLWLMKKLSLMAKREAAHSPKVPLKRTCVFK
FLGATAIDLGKERLGPYLTTIITPLYRELDSTYAEQDPTLKNLAQELIELLKKQVGLEGF
SLAFSAVQREFSQRRAARKRHRAMQAVSNPDIAAKKKLKKHKNKIEAKKRKIEFLRPGYK
AKKQRSHALKDLAMVQ
NT seq
8331 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatcaaatccaagtcttcgtaccacaaatctgagaacaccttcaggtttctcact
tttgctgaacgactcgccaaagtgaacatcgatgtcatccatcgtattgaccgaaccgga
tcgttctcagaggaagtggaaacgtacttttcagaagggctgatgaaatggagagacctc
aacctcacagaacatttcaccacattcctgagagaagtgtccagcaagagccagtccttc
aacctgctggttttccaccagaagtccattgtggagagcctgcaaacccatctggctgtc
aaagacagtctggcgttccagcccctgctggacctggtggtgcagctggccagagacttg
cagacggacttctacccgcatttcccagagttcttcactctcatcacctctctcctggaa
accaaagacacagagctgctggaatgggctttcacctgcctgtcctacctctacaagtac
ctgtggaggctcatggtgaaggacatgaccaacctctacagtttgtacagcaccctgttg
gcgcacaagaaggagcacatccgcaactttgcagctgagagcttctcctttttgatgaga
aaggttccagacctggacgccttgctgacccacatgttctccgacctggagcagcacccg
gagaaggtggagggggcgggtcagctgctgtttgagatgtgcaaaggcgtccgccacatg
ctccactcctgcgctgccaccgccttccccgcggttctgcgtaagctgggccccataacc
agccccgcggcctctctgccgtgggacgctgtccgggacgctgtggatcacatgcttcag
acggctgcggctcacgtccacagagagcacttccaggttttgtgggaatccctgcaggtc
agcctggaggaggtctttggtgtcgtggaggcagggggggaggaccccgagccggccatg
gagcaactggagaggctgctgttcgttctccacaccctggtgtcccacaagggcggggcc
aaagtcacccagccggaggcggtctgccagacggcgctgcggctgattcagagcgcctcc
ctgaggacttcctgctcccgtctcctcctgcagatcacctcctcgctgctcctgggggag
aacgtgaccctgcaggggggggtcatagcggaggtgatccagaaggtgttcagcagctcc
atggagcaggatttaatcttggagttcaccaaagagatgctgagcatgaaccagtttgag
cagctcttcctccccagcctgctgcgctacacggccgctctgttgagctgctgcgacgct
ccgtctcgccacggcgctctggaggcgctggtccaccttatcctcaccaaagctccgccc
ccgtctgatggcgccctggcttttgagacgtacccactactcttcaacggagcgaccaca
gaagcgccccctggggagctgctgagcgtgccgcaacaggtgctggccctgattccagag
gagcagagcggcgccaccactgacctgtcgctgccctgggctgcactggtgttgctgcct
catctcagacctctaccagcagctcaggtcgttcctgctgtggcagctttcctgaaccac
cttctggatcagatccagacggacctactcgggaaagctggtctgttcgtggcccgccag
gctctgagctgcctcctgtctctggacggctccgcccacatcctctccctgctctctgtg
gacgccgtcaacgccgtcttgcggaagttcccgtcggacccgtctgcgctgctcttcgct
gacctctattacacccgcctctcactctgtggcgtctctgagcatctatcccacaatgca
ctgctggagctctaccagatgctgcacgccaacctctcctccaacgtttcaaagatccgc
ctcctgactctgaggatcttctgtcagtttgaggcggagcttcctgcccaggtggaggga
gaggagagtgtggaggtgcagccggtgtttgccgtctgcatgcaggcagaggtggttcca
gcttcagtgcaggactacagagacaagctgctgcacctgcgcaagctgagacacgacctg
gtgcagcgcagcctgccaaacggcccgcccggcaccttccagcaggttcctctgagattt
ctcgtggctatgctttttgttaacttccggccgctttgggacgcagttattgaactcatc
gtgagtcatgctcgcgggatggacaacaaagacttctggagagtcttccatgagcatctg
gagatggtcgccggcctggcagagaaggagctgcaggacgatgacgaggaggaggagaga
gaaggggaggagcctggctgtgatgtaatcgaaagcggggatgtgggggttctgttcctg
gagcagctgaagctgaactccgacccctacgaccggacggacttccccaactttcgcggc
ctcctgtggcgagccatggctcagttcccagagcgggtggaggcgcgcagccgagagctg
agcccgctgctgctccgcttcatcaggaacgagttctatcccaccgacctgctggtggcg
cccactcaggacctgcggaaaacgaaggatgctgctcaagaggagacggagaaggaagag
gaggatgaagaggaggtggagggagacggcaaacctcaaaggaaggctctaccacggaga
gctgctgccaaacagctcatcacccacctcaaggtgtttgctaagttcacaaaccccaga
gctctgtacctggagtccagcctgagccaactttaccaccagttactctgtcatcaggac
cagcagattcagcgtgtagctctggagtgtgtgctcacctacaaagacccaaacctcctt
ccatacaaagagaatctggagaggctgctggaggacaaacacttcaaagaggagatggtc
catttcaacatctctgaggagacgggagtggttgacgcttcgcacagaggacagctgatc
cccgtgctcatgaggatcctgttcggccgccttcgcagtaaagctggcagcaagttccag
gggaagtccagcgccggcgtccgctcctccatcatcctgcgcttcctggcaggttgtcag
gcggaggagctgggaatgttcatcgacctgcttttggagcccgtcaaacatcacagccga
ggttcctgtttggaggcggtccagagagcggtgtcggacacagacccggccgcagtgctg
cctctgggccgtcagcacagcctgctgaacatcctggacgtggtgatccacaaactgggc
cacctcatccacgtgtacctgccccgagtgctgcaggtgctgctgtgtgtgacggcctct
gtgtcggccgtgttagacggcagggagcagctgcgacccggatgcataagtcctctgaag
aacctgaggcggttgggcatcctgaagattcaggacttctttgatggcttcgactcgtac
agcttcagtccagacgagatcgatgccgtgttccaggcggtggtctggactcaggtgtgc
cgtctccccacagagagcccctactcccccacacccctgctaaagctcatccacgtttgg
tgcaaaaatgccaggtatttccccctcctggccaaacagaagccggaccacccacagtgt
gacgtcctcctcaacgtcttcgccctcctctcagcaaagaacgcgtccccggccaccgtc
gccatggtgatggacatagccgagtctctcgctacagcggaagatttcgttccgtcagac
acggaaactgctctggatgtgaacggctgcgtgttcccacagcctgaagagggcgctggt
ctgactccagaatgtttaagtcagggctgcaggctgctgctgccccacatctccaccctg
ctgctgtacttcaacggagtcgtccgcaacaccgacaggctcaggaagaagaagttccga
gcgcaagtctccaaagagctcaacatcctgtccaagatcagtcggtttgtgagcgataag
gagcagagctcggtgctcatcagtctgctgctgccgttcctcctcaaaggcaacaacgct
caagagacggagatcgacatcctggccacaatccagaacctgctgcgtcagtgcgagcgt
ccgtccgccttcctgcggccgctcagcaaactgttcgccgtcattcacaacaagctgccc
cggaaagccctcaccgccgtcttccagactctgtcggatctggacgcgtcgctctcgtac
atcaccgagttggcagcaaagctcaacgccttcgacagccgacatctggacgaggtctac
tttgacgtgcgcttaacggctttccaagacgccacccggcgcgtcagagacctgcagagc
ctggacctggacctcatcagcaccatcgtgtacaactgtttccacacgtatgagatcggc
gacatgtccctggcggataatgccaccctgtgcttgtccacggtgatcggccggctggcg
gctgttggaccaggagagcagatttatagggatctgatccaacacaccatcctggacgcc
gttcttaaggggctgcgcagcaagacggagagtgtgcagcatgagtacacctccatcctg
gcctgcctggtgaagaacttcccctccaggaaggagttcagagacctggtgcagctcacc
gactacaacgacccggagtcggatttctttgagcacatgaagcacatccagattcaccgg
cggggtcgcgccctcaggaagctggccaagcagctgagcgaagggacggtgacgatgagc
ccgcgctccctgcagaactacgtcatgccgtacgccatgacggcgctgctggacgagaag
atgctcaagcacgagaacatgacctcggcgtccgtggaggtggtgggggccgtgtgccgc
cgactcacctggtccaagtacctgtactacctgaagcatttcatccacatcctgcagacg
ggacaaaccgagcagaagctggccgtcagcctgctggtcaccatcctccagtcgttccat
tttgaccatcagaccctcagcagggaaatggaagccgccaaagccagagaagtggggatg
actgaacctgaggaagaggaagctgcagatgaagtggatgggagtgacgaggaggacgcg
atggagaccgatgggaagacggacgacgtccccatggaaacggaggctgcagagggagag
gggggcggccccgctgaggaaaagagcaaagctaaagggaaaacgggacggagcgctgtg
cccagcggactccctcagagcagagaggagctggaagctctcgtcagcgccatccaccag
accgtcaacgacagcgttctgccgcgcctgcacaagtgtctgactgcaaaggtgcagcgt
gaccaggagcacaaggcggtgaaatccaaggacgtgaaagatgaggaggtggcccggatc
cccatcgccttcgccatggtcaagctgatgcagacgctgccgcctcacatcatggaggcc
aatcttcctggaatcctgatcaaagtttgcgtcctgctgaggaaccgcttccaggagatc
cgtgacgtcgcccgcggaactctggtgaagatcctggagactctgggcttcaggttcttg
cactacctcctcaaggagatgcaggccgtcctggtgaaaggatatcaggtccacgttctg
acattcaccgtgttccagctgctgtcggccctcagtcccaccctgaagagcggagagctg
gacccctgcatgagcatgctgattgatatcttcaacaacgagctgttcggttcggtggct
gaagagaaggaggtgaagggcatcgtctccaagctgatggaggcgcggcacagcaagagc
atggagtcctacgagctgctggctcgcttctgcagcagggagagcatcaccaagctcatc
ctgcccctgaaggagatcttggagaccacatccagtctgaaggtgtgtaaccgggtgact
gctgtcctgcggcgcctggtcatgggtctgctggtcaacgctggcatgacctcacaggac
atcctgcttctgagccacagcctgatcagccagagtctgccgctgctcaccaagagagac
cgagagaaagcatcgactaagccccccccagaccccagacttcctcctcccagctgcctg
ctcctgcctcctactccaaaacgaggaggtgtgaaagcccccgtcagcagccgcaccaac
atgcacatcctggtggacgctgggctgaagctgctccacctgagtttgaagaaatccaag
gtgacctcgtctgagccctcagcgctggagatgctggatccttttgtgctgctgctgctg
gaatgcatcaactccatgcatgttaaagtcatcacagaagctctgattgcattcacgtgg
ttgctcaagttccctctgccggcagtggcgcagaacgccgagcagctgaccaagcagctc
ttcgtcctgctgaaggattactctaaagctggagccgcccgcggcgagaactaccacttg
gtccagaactgcttcaaggccgtgactattttggtcaaaaacgtcaaaagcaacaagatc
tctgagacccagctgcaagtgctgctgggatacgcagaggaggacatctatgaccagtcc
cgccaggcaaccgcctttggtctgctgaaggccatcctgtccaggaagctggtggtgccg
gagatggaggacgtcctgaagaaggtggccacgctgtccatcacgggcggtaacggcatg
atcagagttcactgtcgacagatttacctgaagtacctgctggactatccgctggggaag
aagctgaagaaccacctggacttcgtggtggctcagctgcagtacgaacacgacacgggc
agggagtctgcgctggagatgctggcctacatcttccagacgttcccgcagaacttactg
ttcaaacactgcagtctcttcttcgtccctctggcgctcgtcgtcgtcaacgatgactct
gcaaaatgcaaaaaaatggctgccatggctattaagaccctgctgactcacctggacctg
aaccaccagaacaccttgttctcctttgtcaccacctggctgaagtctgaaaagaccagc
ctgcggcgcctaggcgctcagatctgcggtctgtacgtggaggtggaggaggaggagttc
tccagcaggctggaggagctgctgccactgctggagaaggagatccaccctgacaactat
gaagacatcgaggaggagcaggacgagagaggagccgaccgcctcctgttcagccagctg
acgctcctcgccaaactgtgcaaacacgtcagcctgctggagctcagcaaacccgcggag
acgctccgtcacatctggagtcacattgaagcccacctgcggcacccccactgctgggtg
tggcttaccgcctcgcagattttcgggcagctcttcgctgctcagccggcggagaagctg
gtcgccgcgtggaaagaaggaggaggacacgcctcctcgatagcgaccggcttcataacc
agcaacctggacaaaaagatgagggagttggcgttatcgttctgccatcagctgcagtcc
aagttcctggacacgccctcaggagaacaggtgatcaagaacctcctctacgtcggaaag
gtgatttatctcatctcctcagagtctgacatccaggaaaaggagcagggcgagccggag
gacagggacagtgatgacgaagaggagaagaaggaacaagagaaggaggcagaggaggag
gaggacagggacaacaggcctccttctctgctgtggctgatgaagaagctgtctctgatg
gccaagagggaggcggcacactctcccaaagttcctctgaaaagaacctgtgtctttaaa
ttcctgggggcgacggccatcgatttggggaaggagcggcttggaccttatctgaccacc
atcatcactcctctgtacagagagctggacagcacgtatgcagagcaagatcccaccctg
aagaatctggcgcaggagctgatcgagctcctcaagaagcaggtggggctggagggcttc
tcgctggccttctccgccgtgcagagggagttttcacagcggcgagccgcacgcaaacgc
cacagagccatgcaggcggtttccaaccccgacattgctgccaagaagaaactcaagaag
cacaaaaataaaatcgaggccaaaaagcgaaaaattgagttcctgcggcccggatataaa
gccaagaagcagcgtagccacgccctcaaagacctcgccatggtgcagtga
DBGET
integrated database retrieval system
