Oryzias melastigma (Indian medaka): 112160390
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Entry
112160390 CDS
T07439
Name
(RefSeq) paired amphipathic helix protein Sin3a
KO
K11644
paired amphipathic helix protein Sin3a
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml04350
TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
112160390
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
oml03036
]
112160390
Chromosome and associated proteins [BR:
oml03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
Sin3A-HDAC complex
112160390
REST complex
112160390
Heterochromatin formation proteins
Other heterochromatin formation proteins
112160390
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sin3a_C
PAH
Sin3_corepress
PAH_ZNF598
Motif
Other DBs
NCBI-GeneID:
112160390
NCBI-ProteinID:
XP_024150632
Ensembl:
ENSOMEG00000006358
UniProt:
A0A3B3BJG5
LinkDB
All DBs
Position
LG3:4768704..4786824
Genome browser
AA seq
1293 aa
AA seq
DB search
MKRRVEDQEVIFAPQQQHPHRTPVQGLAENIQHRALAPALTGIEVAADSMQPSTGIQYSL
PQGYQVPTMPQSTSGHGHGHNSTAPYVGPHVHNLAVQQQVSAVVQGHVHPSAPITSTPGQ
QQQFQRLKVEDALSYLDQVKLQFGNQPQVYNDFLDIMKEFKSQSIDTPGVINRVSQLFKG
HPDLIMGFNTFLPPGYKIEVQTNDLVNVTTPGQIHYITPHGISVQNIPVTGAPSQPPTHP
QPQSLPQTGLHTTTTPPVATQPTANKISKPVQSPAHTPTSQPNPSIPSYASPRSPSVQPH
TPVSSTPSSGPPLQNNQPVEFNHAINYVNKIKNRFQGQPDIYKAFLEILHTYQKEQRNAK
EAGGNYTPALTEQEVYTQVARLFKNQEDLLSEFGQFLPDANNSVLLNKTAPDRAESVRND
HGGTVKRSLLNNKQRLSQNGLPIKRPAGMSATPPIKKKPKMMGKDHSLTELGKISTSTET
MFFEKVKKALRSAEGYENFLRCLYIFNQEVISRTELVQLVIPFLGKFPELFTWFKNFLGY
RESSYGETSHAESLPKERSTEGIAMEIDYASCKRLGSSYRALPKSYQQPKCTGRTPLCRE
VLNDTWVSFPSWSEDSTFVSSKKTQYEEHIYRCEDDRFELDIVLETNLATIRVLETVQRK
LSRMSAEEQLRFRLDNTLGGSSEVIHRKAIQRIYGDKAHDIIDGLKRNPAVSVPIVLKRL
KMKEEEWREAQRGFNKIWREQNEKYYLKSLDHQGINFKQNDTKMLRSKTLLNEIEILYDE
RQERTSEETGTQPPSSPHMTFTYDDSQILEDAAALIIHHVKRQVGIQKEDKFKIKQIIHH
FIPDLLFARRGELSDVEEEEEEEEDDAEMDEGGPKKHNGLSGRSPVKSKLLFSNTTAQKL
RGTDDAYNLFFVNNYWYVFFRLHHILCSRLLRIYGQAEKQIEEDAREREWEKEVLGLKKD
KNENPAIQLKMKEPVDVEVEDYYSVFLEMVRNLLDGNMEPAQYEDSLREMFTIHAYVAFT
MDKLIQNIVRQLQHLVTDDVCSRVMDMYLSECANKGTGGTLSSQTSRATAEGGYQRKAEQ
LMSDENCFKVMFVKKEGTVSLALELLDTEEENSDEPADAQRWSDYMGRYLTSDSASPELR
EHLAQKPVFLPRNLRQIRKCQKGWEQMQQERLSKSSSNKPQEGSSELNMECMFKLNSYKM
VYVCKSEDCMYRHTALTRAHQSHQQVNTRLHRRFQTWLDGWVKEHVTSEMAADNHKWLMG
DQQEGLLSCTTTRCPEVLHYLNVNKYRVKYRTL
NT seq
3882 nt
NT seq
+upstream
nt +downstream
nt
atgaagagacgagtggaggaccaggaagtgatatttgctccccagcagcagcatccacat
cgcaccccagttcaaggccttgcagaaaacattcagcaccgggccctcgccccagccctc
actgggatagaggtggctgcagatagcatgcagccatcaactggcattcagtattctctc
ccacagggataccaggtgcctaccatgcctcagagcacaagtgggcatggacatggacac
aacagcactgcaccctatgttggtccccatgtacacaaccttgcagtccaacaacaggtc
tctgcagttgttcaaggccatgtccatccatctgcacccatcacatctacgccagggcag
cagcagcagtttcagcgactgaaggttgaagatgccttgtcgtacttggatcaagtgaaa
ctgcagtttggaaatcaaccccaagtttacaatgatttccttgatataatgaaagaattc
aaatcacaaagcatagacactccaggagtcatcaaccgtgtctcccagctctttaagggc
cacccagacctcattatgggttttaacactttcttgccaccgggatacaagatcgaagtt
caaaccaacgatctggttaatgtaaccacaccggggcagatccactacatcaccccgcat
ggtatctctgttcagaacatacctgtaaccggggcgcccagtcagcctccaacccacccc
cagccgcagagtctgccccaaactggcttacacacaaccacgacccctcctgttgccacc
cagcctactgctaacaaaatcagcaagcctgtccagtctccggcccatacaccgaccagc
cagcccaatccatccatcccatcttatgcctcgccacgctcgccctcggtgcaaccgcac
acccctgtcagcagcacgccatccagcgggccacccctccaaaacaaccagccagtggag
ttcaaccatgccatcaattatgtcaacaagatcaaaaaccgcttccagggccagccagac
atctacaaggcctttctggagatcttgcacacataccagaaggagcaacgaaatgctaaa
gaagcaggaggtaattacaccccagcactgactgaacaagaggtttacactcaagtggcc
agacttttcaagaaccaggaggacttactgtcggagtttggtcagttcctgcctgacgcc
aacaattctgtgttactaaacaagactgcaccagacagagccgagtctgtccgcaatgat
cacggcggtacagttaagagatccctgctgaacaataaacagaggctgagtcagaacggc
ttgccaatcaagagacctgctggaatgagtgccacgcccccaatcaagaagaagcctaaa
atgatggggaaggaccacagcctgactgaattgggcaaaatcagcaccagcactgaaacc
atgttctttgagaaggtgaagaaggctctacgaagtgcggaggggtacgaaaacttcctg
cgttgtctgtacatcttcaaccaggaagtgatttctcgcactgagctggtccagttggtt
attccatttcttggaaaattcccggagcttttcacatggtttaagaacttcttgggctac
cgagagtccagctatggagagacgagccacgcagagagtttacctaaagagcggtccaca
gaggggatcgccatggagatcgactatgcttcatgcaagaggctggggtccagttacaga
gcactacccaagagctaccagcagcccaagtgcactggaagaacgccactatgcagagag
gttctgaatgatacatgggtgtcttttccatcgtggtctgaggattccacctttgtgagc
tccaagaagactcagtacgaggagcacatttacagatgtgaagatgaccgctttgagctg
gatattgtgctggaaaccaacctcgccacaataagagtcctcgagactgtgcaaaggaag
ttatctcgcatgtcggctgaagagcagctgcgcttcaggctagacaacacactgggtggt
tcctcagaggtcattcaccgaaaagctatccagaggatatatggagacaaagcccatgac
atcattgacgggctcaagagaaacccggcggtgtccgtccctatagtgctaaagaggtta
aaaatgaaggaggaggagtggagggaagcccagagaggctttaacaaaatctggcgggag
caaaatgaaaagtactacctgaagtcgctcgaccatcaaggcataaacttcaagcagaac
gacaccaagatgctgcgctccaagactttgcttaacgaaattgagattttatatgacgag
cgccaggaacgaacatcagaggaaacggggacacagcctccgagcagcccgcacatgacc
ttcacctacgacgacagtcaaatcctggaagacgccgccgctctgatcatccatcacgtc
aagagacaagtgggcatccagaaagaagacaagttcaagatcaaacagataatccaccac
ttcatccccgacctgctgttcgcgcggcgcggagagctctctgatgtggaggaggaagag
gaggaggaggaggacgacgcagagatggacgagggcggccccaagaagcacaacggcctg
tcgggcaggagccccgtcaagtccaagctgctgttcagcaacactacagcccagaagctt
cggggcacagacgatgcctataatttgttcttcgtcaacaactactggtacgtcttcttc
cgcctccatcacattctctgctcccgcttgctgagaatctacgggcaagcagagaagcag
atcgaggaggacgcccgcgagcgggagtgggaaaaggaagtattggggctgaaaaaggac
aagaatgaaaacccagcaatccaactgaagatgaaggagccagtggacgtcgaggtggag
gactattactccgtgtttctggaaatggtgcggaatctcctggatgggaacatggagcca
gcccagtatgaggactcccttagggagatgtttaccatccatgcctacgttgccttcacc
atggataaactcattcagaatattgtccggcagctccagcaccttgttactgatgacgtg
tgcagccgtgtgatggacatgtacctgagtgaatgtgccaataaaggcacagggggcaca
ctgtcctcacagacatccagagccacagcagaggggggctaccagcgcaaggcagagcag
ctcatgtcagacgagaactgcttcaaggttatgtttgtgaagaaagaaggaacagtcagt
ctggcactggagctgctggacacagaggaggagaactccgacgagccagcagatgctcag
aggtggtcagactacatgggcagatacctcacctcagattctgcatccccagagttacgg
gaacacttagcccagaagccggtgttcctccccaggaatttaagacagatccggaagtgc
cagaaaggatgggagcagatgcagcaggagaggctgtccaagagttcctcaaacaagcca
caggagggcagcagcgagctgaacatggagtgcatgttcaaactgaactcctacaagatg
gtctacgtctgcaaatctgaggactgcatgtacaggcacacagcactcaccagagctcat
cagtcccaccagcaggtgaacacgcgtctgcacaggcgcttccagacctggctggacggc
tgggtcaaggagcacgtgacgagcgaaatggctgcagacaaccacaagtggctgatggga
gaccaacaagaaggacttttgtcgtgcaccaccactcgctgccccgaagtgctccattat
cttaacgtcaacaagtatcgggtgaagtacaggacgctgtag
DBGET
integrated database retrieval system
