KEGG   Oryzias melastigma (Indian medaka): 112160502
Entry
112160502         CDS       T07439                                 
Symbol
sdc3
Name
(RefSeq) syndecan-3
  KO
K16337  syndecan 3
Organism
oml  Oryzias melastigma (Indian medaka)
Pathway
oml04514  Cell adhesion molecules
oml04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:oml00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04514 Cell adhesion molecules
    112160502 (sdc3)
 09140 Cellular Processes
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    112160502 (sdc3)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00535 Proteoglycans [BR:oml00535]
    112160502 (sdc3)
Proteoglycans [BR:oml00535]
 Cell surface proteoglycans
  Syndecan family (transmembrane HSPG)
   112160502 (sdc3)
SSDB
Motif
Pfam: Syndecan PRP38_assoc TAF4 SprA-related DUF1275 TMEM247
Other DBs
NCBI-GeneID: 112160502
NCBI-ProteinID: XP_024150842
Ensembl: ENSOMEG00000009263
LinkDB
Position
LG11:17170166..17211053
AA seq 406 aa
MKLPVLLALTALLAGAATGQTRSPSIDDEGSAGDLYDDDDLYSGSGSGFSEITIRPTSVG
VSFTTEEPLVFSTTQATSPAPSASPAAEPSPIPEDVSTTPLPTEADEESGAFWDREKERE
MEREKERQMEKERQKELERERERERERERERQRERELERERERERIRAAAQTTAAPRSPG
VLSVVTSSPTAGTAESAAPSAGSDDLTFFTTEEGDFNLPTETTSFYPGFDLESVTDEDTP
TTTEPTPEPTTAARTVRAWVPFRPRVPITTATKAAPTERTTRPQPPTTTQEGNNEVGAVG
PSGDFEIRIGLGEEPPMEPDLTGNTVDVGAGSSSAAQLPQKNILERKEVLIAVIVGGVVG
ALFAAFLVMLLVYRMKKKDEGSYTLEEPKQATVTYQKPDKQEEFYA
NT seq 1221 nt   +upstreamnt  +downstreamnt
atgaagctgcctgtgctgttggcgctgacggcgctgctcgccggcgctgccacggggcag
acgcggtcgccgtccatcgacgatgagggctcagcgggagacctttacgacgacgacgac
ctgtactcgggctcgggctctggcttttctgagatcaccataaggccaacatcagtgggc
gtgtccttcaccacagaggagcctcttgtcttctcaaccacccaggccacaagccccgcc
ccctccgcctcacctgcagcagagcccagccccatcccagaggatgtctccaccacccct
ctgccaacggaggccgacgaagagagcggggccttctgggacagagaaaaagaaagagag
atggagagagaaaaagagagacagatggagaaggagcggcagaaggagttggagcgtgag
cgggagagggaacgggagagggagagggagcgccagagggagcgggagctggaacgagag
agggagagggagcgaattcgggctgccgctcaaactacagccgcccctcgctctcccggg
gtcctctctgtggtgaccagcagcccaacagctggcacagcggagagcgcagcaccctct
gctggctcagatgacctgaccttcttcaccactgaagaaggggacttcaatctgccaact
gagaccacctcgttctaccccggctttgacctggagagcgtcacagacgaggacacgccc
accacaacggagcccactcctgagcctacgactgctgcgcgcaccgtcagagcctgggtc
cccttcagacccagagtccccatcaccacagccaccaaggcggcgccaacagagagaacc
acacggcctcagccgcccacaacgacacaggagggtaacaatgaggtgggcgctgtggga
ccaagtggagactttgagatccgcatcggcctcggcgaggaacctccaatggaaccggat
ttgacgggcaacacggtggatgtcggtgctggaagcagctcggctgcgcagctgccacag
aaaaacatcctggagaggaaagaggttctaatagcggtgatcgtaggaggcgtggtgggg
gctttgttcgccgccttcctggtgatgctgctagtctaccggatgaagaagaaggacgag
ggcagttacactctggaggaacccaagcaggccaccgtcacctaccagaaaccagacaag
caggaggagttttacgcgtaa

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