Oryzias melastigma (Indian medaka): 112160502
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Entry
112160502 CDS
T07439
Symbol
sdc3
Name
(RefSeq) syndecan-3
KO
K16337
syndecan 3
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml04514
Cell adhesion molecules
oml04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
112160502 (sdc3)
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
112160502 (sdc3)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
oml00535
]
112160502 (sdc3)
Proteoglycans [BR:
oml00535
]
Cell surface proteoglycans
Syndecan family (transmembrane HSPG)
112160502 (sdc3)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Syndecan
PRP38_assoc
TAF4
SprA-related
DUF1275
TMEM247
Motif
Other DBs
NCBI-GeneID:
112160502
NCBI-ProteinID:
XP_024150842
Ensembl:
ENSOMEG00000009263
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Position
LG11:17170166..17211053
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AA seq
406 aa
AA seq
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MKLPVLLALTALLAGAATGQTRSPSIDDEGSAGDLYDDDDLYSGSGSGFSEITIRPTSVG
VSFTTEEPLVFSTTQATSPAPSASPAAEPSPIPEDVSTTPLPTEADEESGAFWDREKERE
MEREKERQMEKERQKELERERERERERERERQRERELERERERERIRAAAQTTAAPRSPG
VLSVVTSSPTAGTAESAAPSAGSDDLTFFTTEEGDFNLPTETTSFYPGFDLESVTDEDTP
TTTEPTPEPTTAARTVRAWVPFRPRVPITTATKAAPTERTTRPQPPTTTQEGNNEVGAVG
PSGDFEIRIGLGEEPPMEPDLTGNTVDVGAGSSSAAQLPQKNILERKEVLIAVIVGGVVG
ALFAAFLVMLLVYRMKKKDEGSYTLEEPKQATVTYQKPDKQEEFYA
NT seq
1221 nt
NT seq
+upstream
nt +downstream
nt
atgaagctgcctgtgctgttggcgctgacggcgctgctcgccggcgctgccacggggcag
acgcggtcgccgtccatcgacgatgagggctcagcgggagacctttacgacgacgacgac
ctgtactcgggctcgggctctggcttttctgagatcaccataaggccaacatcagtgggc
gtgtccttcaccacagaggagcctcttgtcttctcaaccacccaggccacaagccccgcc
ccctccgcctcacctgcagcagagcccagccccatcccagaggatgtctccaccacccct
ctgccaacggaggccgacgaagagagcggggccttctgggacagagaaaaagaaagagag
atggagagagaaaaagagagacagatggagaaggagcggcagaaggagttggagcgtgag
cgggagagggaacgggagagggagagggagcgccagagggagcgggagctggaacgagag
agggagagggagcgaattcgggctgccgctcaaactacagccgcccctcgctctcccggg
gtcctctctgtggtgaccagcagcccaacagctggcacagcggagagcgcagcaccctct
gctggctcagatgacctgaccttcttcaccactgaagaaggggacttcaatctgccaact
gagaccacctcgttctaccccggctttgacctggagagcgtcacagacgaggacacgccc
accacaacggagcccactcctgagcctacgactgctgcgcgcaccgtcagagcctgggtc
cccttcagacccagagtccccatcaccacagccaccaaggcggcgccaacagagagaacc
acacggcctcagccgcccacaacgacacaggagggtaacaatgaggtgggcgctgtggga
ccaagtggagactttgagatccgcatcggcctcggcgaggaacctccaatggaaccggat
ttgacgggcaacacggtggatgtcggtgctggaagcagctcggctgcgcagctgccacag
aaaaacatcctggagaggaaagaggttctaatagcggtgatcgtaggaggcgtggtgggg
gctttgttcgccgccttcctggtgatgctgctagtctaccggatgaagaagaaggacgag
ggcagttacactctggaggaacccaagcaggccaccgtcacctaccagaaaccagacaag
caggaggagttttacgcgtaa
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