Oryzias melastigma (Indian medaka): 112160514
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Entry
112160514 CDS
T07439
Symbol
ppfia1
Name
(RefSeq) liprin-alpha-1 isoform X1
KO
K26226
liprin-alpha
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
112160514 (ppfia1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
oml04131
]
112160514 (ppfia1)
Membrane trafficking [BR:
oml04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
112160514 (ppfia1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LIP-1
SAM_1
SAM_2
Motif
Other DBs
NCBI-GeneID:
112160514
NCBI-ProteinID:
XP_024150861
Ensembl:
ENSOMEG00000002546
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All DBs
Position
LG3:complement(8317826..8379795)
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AA seq
1248 aa
AA seq
DB search
MMCEVMPTISEAEGPGGGNGRRGSGSPLQSDSEGHFESLMVSMLEERDRLLETLRETQEN
LGLTQGKLHEVSHERDSLQRQLNTALPQEFAALTKEVNVCREQLLEKEEEIAELKAERNN
TRLLLEHLECLVSRHERSLRMTVVKRQAQSPAGVSSEVEVLKALKSLFEHHKALDEKVRE
RLRVALERCSALEEQLAISHKELSYLREQNSQKRGLADGTIEVNHNFENTPSTNGKRSSD
GSLSQEEESGSAFGKAGELQEVVDRQTADLGQMKERMAAMVSRISELEEDLDTARKDLIK
SEDMSTRLQRDLRESMAQKEDMEERITTLEKRYLAAQREATSVHDLNDKLENEVANKESL
FRQAEERNRQLQEKLELADQKLQQTIRKAETLPEVEAELAQRVAALTKAEERHGNVEERL
RQLEAQLEEKNQELLRARQREKMNEEHNRRLSETVDKLLSESNERLQLHLKERMSALEDK
NALIRELDHMKKLIEESHHEKEQLLIQIETMRAETEVGRSNSSLHGRSQLGSTPDFRYPV
SASSMMDGNSDSFGGALVLRRPQKGRMVALRDEPSKRHVQTLNEQEWERMQQANVLANVA
QAFESDMDVSDLEEDREMIFSSVDLLSPAGQADAQTLALMLQEQLDAINNEIRMIQEEKE
NTAIRAEEIECRVGSGDGIGGRFRSLSSIPPSLCAGSSLGGSPPSSGHSTPRRIPRSPNR
ELDRMGVMTLPSDLRKHRRKSSQDDKATIRCETSPPTTPRSMRLNRESGHTASHEDIRDI
RGLSSLQDGQGSNPSSSNSSQDSLNKAAKKKSIKSSIGRLFGKKEKGRPSLPGKDLPSQA
GTPEAEGSPKEGLGMGTLGGPADKNRKLQKNPKTGHELLEEARRQGLPFAQWDGPTVVAW
LELWVGMPAWYVAACRANVKSGAIMSALSDTEIQREIGISNPLHRLKLRLAIQEIMSLTS
PSAPPTSRTSTGNVWVTHEEMESLAATPPTEDDEGSWAQTLAYGDMNHEWIGNEWLPSLG
LPQYRSYFMESLVDARMLDHLTKKDLRGQLKMVDSFHRNSFQCGVMCLRRLNYDKKELER
RREDSQLELKDVLVWSNERVISWIQSIGLKEYSSNLYESGVHGALLALDETFDHNTLALL
LQIPTQNTQARAALEHEYCGLLAIGTDRRIDEDDEKNFRRAPSWRKKFRPKDVRGGALGV
SDTLPANFRVTNSSAASPSTQPKRSPVDGSRWSDDEGQFPAFKTRMMN
NT seq
3747 nt
NT seq
+upstream
nt +downstream
nt
atgatgtgtgaagtgatgccaaccatcagtgaggccgaagggcctggtggagggaacggc
cggcgaggttctggctctcccctgcagtcagactctgagggtcactttgagtcgttgatg
gtgtccatgctggaggagcgggatcgccttctggagaccctgagggaaactcaggagaac
ctgggcctgacccagggcaaacttcatgaagtgagtcacgaaagggactccctgcagagg
cagctgaacacagctttaccacaggagtttgctgctctaacaaaggaggtgaacgtgtgc
cgggagcagcttctggagaaagaggaagagatcgcagagttgaaggcggagaggaacaac
acccggctcctgctggaacacctggagtgtctggtgtcacgccacgagcgcagtctgagg
atgactgtggtgaagaggcaggcacagtctcctgcaggcgtctccagcgaggtggaggtc
ctcaaagctctcaagtcactttttgaacaccacaaagctcttgatgagaaggtaagagag
cgtctccgtgttgctctggagcgatgcagcgctttggaggaacagctcgccatttcacac
aaagaattgtcttatcttagagagcaaaacagtcagaaaagagggttggctgatggaacg
attgaggtcaaccacaactttgagaacacccccagcaccaatggaaagcgatcatcagat
ggctctctgagccaggaagaggagtcaggctctgcctttgggaaggcaggagagctccag
gaggtcgtggaccgccagaccgctgacttgggccagatgaaggagcgcatggccgctatg
gtgtcacgcatcagtgagctggaggaggatctggacacggcccgaaaagacctcatcaag
tccgaagacatgagcacccgtctccagagagacctcagagagtcaatggcgcagaaggag
gacatggaggagaggatcaccaccctggagaagcgctacctggcagctcagcgggaggca
acctccgtccacgacctcaatgacaagctggaaaatgaagtggccaacaaggagtctctt
ttcagacaagcggaggaaagaaaccggcagctccaggagaagctggagctggctgaccag
aagttgcagcagaccatccgcaaggcggagactctgcctgaggtggaggctgagttggcg
cagagagtcgctgccctcacaaaggcagaggagcgccatggtaatgtggaagagagactg
aggcaactggaggcccagctcgaggagaagaaccaggagctgctgcgggcgcgccagcga
gagaagatgaacgaggagcacaaccgccgcctctctgagacggtggataagctgctgtca
gagtccaacgagaggctgcagcttcacctgaaggagaggatgtctgctctggaggacaag
aatgctttgattagagaactcgatcacatgaagaagcttattgaggagtctcaccacgag
aaggagcagctgctcatccaaattgagaccatgagagcagagacagaggtcggcaggagc
aactcctcactccacgggcgctctcagctgggcagcaccccagatttcaggtatccagtg
tcggcttcctccatgatggacggcaactctgacagcttcggcggcgctctggttctgagg
cgacctcagaaagggaggatggtggcgctccgagacgagccatctaagcgacatgtgcag
acgctgaacgagcaggagtgggagcgcatgcagcaggcaaacgtgttggctaacgtggcg
caggcctttgagagcgacatggacgtctccgacctggaggaggaccgggagatgatcttc
agctccgtggacctgctgtcccctgctggtcaggctgatgcacagacgctggctctgatg
ctgcaggaacagctggatgctatcaacaatgaaatcaggatgatccaggaggagaaggag
aacactgccatccgagcggaggagatcgagtgcagggtggggagtggcgatggcatcgga
ggacgctttcgctcgttgagctccatcccaccctctctgtgtgccggctcctcgttgggc
ggctctccgcccagctcgggccactccacccccagacgcattcctcgcagccccaacaga
gaactggaccggatgggcgtcatgaccttgcctagtgacttacgcaagcaccgcaggaag
tcctctcaggacgataaagccacgattcgatgtgaaacctcgccccccaccactccccgc
tcaatgcgcttgaacagggagtccggccacaccgccagccatgaagacataagagacatt
cgaggtctgagcagcctgcaggacggccagggcagcaaccccagcagcagcaacagcagc
caggactccctcaacaaggcggccaagaagaagagcatcaagtcttccattggacgcctg
tttgggaagaaggaaaagggccggcccagccttcctggaaaggacttaccaagtcaagct
ggtactcctgaggctgaaggatccccaaaggaaggcctcgggatgggcacgctcggaggc
cctgcagacaagaaccggaagctgcagaagaatccaaagaccgggcatgagttactggag
gaggctcgcaggcagggcctgcccttcgcccagtgggacggacccactgttgtggcatgg
ttggagctgtgggtgggcatgccggcctggtacgtggctgcctgccgagcaaacgtgaag
agcggagccatcatgtcggctctgtcggacaccgagatccaaagagagatcggcatcagt
aacccgctgcaccgtctcaaactgcgcctggccatccaggaaatcatgtccctcaccagc
ccctcggccccgcccacctccagaacgagcacaggaaacgtctgggtcacacacgaagaa
atggagagtttggcagccacgcctcctacggaggatgacgagggtagctgggcccagact
ctggcgtatggagacatgaaccacgagtggattggtaacgagtggcttcccagcctgggt
ttgccgcagtaccgctcatacttcatggagtccctggtggacgcccgcatgctggaccac
ctcaccaagaaggacctccgaggacagctgaagatggtggacagcttccacaggaacagt
tttcagtgtggtgtaatgtgtctgaggaggctcaactatgacaagaaggagctggagagg
agaagagaagactctcagctggagctaaaagatgttctggtgtggagcaatgagcgagta
atcagctggatccaaagcatcggcctcaaagagtacagcagcaacctgtatgagagcgga
gttcacggggcgctgctcgccctggacgagaccttcgatcacaacacgctggccctgctg
ctgcagatcccaactcagaacacgcaggccagagcagctctggagcacgagtactgcggc
ctgctggccatcggcacagacaggagaattgatgaggacgatgagaagaacttccgccgt
gcaccgtcatggaggaagaagttcaggcccaaagacgttcgaggcggagctttaggtgtc
tccgacactcttcctgctaacttccgagtgacaaacagcagcgcagcgtctccctccacg
cagccaaagaggagtccggtggacggtagccgctggtcagacgatgaagggcaattccca
gcattcaagaccaggatgatgaactga
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