Oryzias melastigma (Indian medaka): 112160520
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Entry
112160520 CDS
T07439
Symbol
ctr9
Name
(RefSeq) RNA polymerase-associated protein CTR9 homolog
KO
K15176
RNA polymerase-associated protein CTR9
Organism
oml
Oryzias melastigma (Indian medaka)
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
oml03021
]
112160520 (ctr9)
Transcription machinery [BR:
oml03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
PAF1 complex
112160520 (ctr9)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_1
TPR_2
TPR_19
TPR_14
TPR_8
TPR_16
TPR_12
TPR_17
TPR_10
TPR_6
TPR_11
TPR_7
TPR_9
TPPII_C
ANAPC3
O-antigen_lig
Motif
Other DBs
NCBI-GeneID:
112160520
NCBI-ProteinID:
XP_024150888
Ensembl:
ENSOMEG00000001526
LinkDB
All DBs
Position
LG3:17391811..17400041
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AA seq
1145 aa
AA seq
DB search
MSRGSIEIPLRDTDEVIELDFDQLPEGDEVISILKQEHTQLHIWIALALEYYKQGKTEDF
VKLLEAARIDGNLDYRDHEKDQMTCLDTLAAYYVQQARKEKNKDAKKELITQATLLYTMA
DKIIMYDQNHLLGRACFCLLEGDKMDQADAQFHFVLNQSTNNIPALLGKACISFNKKDYR
GALAYYKKALRTNPGCPAEVRLGMGHCFVKLNKLEKARLAFSRALELNSKCVGALVGLAV
LELNNKEADSIKNGVQLLSRAYTIDPSNPMVLNHLANHFFFKKDYSKVQHLALHAFHNTE
VEAMQAESCYQLARSFHVQEDYDQAFQYYYQATQFASTTFVLPFFGLGQMYVYRRDKENA
AQCFEKVLKAYPNNYETMKILGSLYATSDDQDKRDIAKGHLKKVTEQYPDDVEAWIELAQ
ILEQTDIQGALSAYGTATRILQEKVQADVPPEILNNLGALHFRLGNLGEAKKYFLASLDR
AKAEGEHDEHYYNAISVTTSYNLARLYEAMCEFHEAEKLYKNILREHPNYVDCYLRLGAM
ARDKGNFYEASDWFKEALQINQDHPDAWSLIGNLHLAKQEWGPGQKKFERILKQPSTQND
TYSMLALGNVWLQTLHQPTRDREKEKRHQDRALAIYKQVLRNDAKNLYAANGIGAVLAHK
GYFREARDVFAQVREATADISDVWLNLAHIYVEQKQYISAVQMYENCLKKFYKYQNTEVL
LYLARALFKCGKLLECKQILLKARHVAPSDTVLMFNVALVLQRLATLVLKDEKSNLKAVL
SAVKELELAHRYFSYLSKAGDKMRFDLALAASEARQCSDLLSQAQYHVARARKQDEEEKE
LRAKQEQERDLLRQQLLKQQEEKRNKEAEEQKKLLEQRALFVEKTKNLLSFADVPKEASK
DKKKGGGGSGRRKKGGDMDEFVNDDSDEDLPLKKKKKRKGSGSGSDQDDNEDGERKKKKR
RPTKGGDDSDDEEGAPRPKKQRKHKEGRKKIEKPQPERMPPSLKGKIKSKAIISSSESSS
DEDGLKIAEDRHQRDSGSGSDDEGSSHRKRIMSDSEAGSPQRSAASEDDESGSDRPVKRR
VQRQSDSEASDNESKKSRSGSDDESRAGSPAAASDAGSEAGSDNEGSPRHSDNDSKQEGS
NDDSD
NT seq
3438 nt
NT seq
+upstream
nt +downstream
nt
atgtctcgtggctcaatcgagatccccttgagggacacggatgaggttatcgagctcgac
tttgaccagcttcctgagggagacgaggtcatcagcatcttgaagcaggaacatacgcag
cttcacatctggattgctttggcattggagtattacaaacagggcaagacagaagatttt
gtgaagcttttagaagctgcacgaattgatggaaacctcgactacagagaccacgaaaag
gaccagatgacctgcttagacaccttggctgcttattatgttcagcaagcacgtaaagag
aaaaacaaagatgccaagaaagagctcatcacccaggccactctgctctataccatggct
gacaaaatcatcatgtacgaccagaaccatttgttgggaagagcttgtttctgcctgctg
gaaggagacaagatggaccaggctgatgctcagttccactttgtcctcaaccagtccacc
aacaacatccccgctttgctcggcaaagcctgcatctcattcaacaaaaaggactacaga
ggagcacttgcatactacaaaaaggctttacgtacaaatcctggctgcccagctgaggta
aggctggggatgggccattgctttgtcaagctaaacaaactggaaaaggcccgtttggct
ttcagtcgagccctggagctgaactcaaagtgtgtgggagcgcttgttggtttggcggtt
ttggagctcaacaacaaagaggcagactccataaagaacggcgtgcagctcctgtcacgg
gcctacaccatcgaccccagcaaccccatggtgcttaaccaccttgccaatcacttcttc
ttcaaaaaggactacagtaaagtgcagcatcttgcactgcacgcgtttcacaacactgaa
gtcgaggccatgcaggctgagagctgctatcagctagctcgctcatttcacgtccaggag
gactacgaccaggcttttcagtattactaccaggccactcagtttgcatcaactaccttt
gtgctgcccttcttcggtctgggtcagatgtacgtttatcgacgagacaaggaaaatgca
gcacagtgctttgagaaggttctgaaggcctatcccaacaactatgaaaccatgaaaatc
ctggggtctctctatgcaacgtctgacgatcaagacaagagggatattgccaaaggccac
ctcaaaaaagtaacagagcagtacccggatgatgtagaggcgtggattgagctcgcccag
atcttggagcagactgacatccagggtgctctgtctgcttacggcacagctacccgcatc
ctgcaggagaaggtgcaggccgacgttccccctgagattctcaacaatctgggcgctctg
cactttagactggggaacctgggggaggccaagaaatacttccttgcatccctggaccga
gccaaagctgaaggggagcacgatgagcattattacaatgccatttctgtcaccacttcc
tacaatctggcccgtttgtatgaggcgatgtgtgaattccacgaagctgagaagctctac
aaaaacatcctcagggagcatcccaattatgtggactgttatttgcgtcttggagcgatg
gctcgtgacaaagggaacttctacgaggcctctgattggttcaaagaagccctgcagatc
aatcaggatcacccggacgcctggtccttaatcggtaatcttcacttggctaaacaagag
tgggggccagggcaaaagaagtttgagcggattctgaagcagccgtccacccagaacgac
acctactccatgcttgctctggggaatgtgtggcttcaaaccctgcaccagccaacaagg
gaccgggaaaaggaaaagagacatcaggatcgagctctggcgatatacaagcaagtcctg
cgaaatgatgccaagaacctttatgctgctaatggcattggtgccgtgctcgcccataag
ggctatttccgagaggctcgtgacgtgtttgctcaggtgagggaggccacggccgacatc
agcgacgtctggcttaacctggctcacatctatgtagagcagaagcaatacatcagtgcc
gtgcagatgtatgaaaattgcttgaagaaattttacaagtatcagaacacagaggttctg
ctgtacctggccagagccttgttcaaatgtggaaaactgctggagtgcaagcagatcctg
ctgaaggcccgccatgtggctcccagtgacaccgtgctgatgttcaacgtggcgttggtc
cttcagagactggccactctagtgctgaaagatgagaagagcaacctgaaggctgttctc
agtgcggtgaaagagcttgaacttgctcacaggtatttcagttatctcagcaaggctgga
gacaagatgaggtttgacctcgccctcgctgcgtctgaggccaggcagtgctcggatctg
ctgagccaggctcagtatcacgtggcacgagcgagaaagcaggatgaggaggagaaggag
cttcgagctaaacaagagcaggagagggacctgctgcgccaacagctgctaaaacaacag
gaggaaaagcgaaacaaagaggcagaggagcagaagaagctcctggagcagagagctttg
ttcgtggagaagaccaagaatctgctcagctttgcagacgttccaaaagaagcgtcaaag
gacaagaagaagggaggaggcggcagtggacgtcgcaagaaaggaggagacatggatgag
tttgtaaacgatgactcggatgaggacctgcccttgaagaagaagaagaagaggaaggga
agtggcagcggcagcgaccaggatgacaacgaagatggagagaggaaaaagaagaagagg
agaccaaccaaaggcggagatgatagcgatgatgaagaaggtgcacctcgacctaaaaag
cagcgcaaacacaaagaaggacgcaagaagatagagaagccccagcctgagcgaatgcca
ccatcccttaaagggaagatcaagtccaaggccatcatctcctcctccgagtcttcttca
gatgaggacggactgaagatagcagaagacagacatcaaagagacagcggctcaggctct
gacgacgagggcagtagccacaggaaacgcatcatgtccgacagcgaggcgggaagccct
cagcgatctgcggcctcggaggatgacgagtctggcagcgaccggccagtgaagagaagg
gtgcagcggcagtccgactctgaagcgtcggacaacgagagcaagaagagccgctcggga
tcagacgacgagtcgagggccggctcacctgctgcagcttccgacgcaggatcggaggcg
gggtcagataacgagggctccccacgccactccgacaacgactcaaagcaggagggatcc
aacgacgacagtgactaa
DBGET
integrated database retrieval system
