Oryzias melastigma (Indian medaka): 112160679
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Entry
112160679 CDS
T07439
Symbol
vars2
Name
(RefSeq) valine--tRNA ligase, mitochondrial
KO
K01873
valyl-tRNA synthetase [EC:
6.1.1.9
]
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml00970
Aminoacyl-tRNA biosynthesis
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09120 Genetic Information Processing
09122 Translation
00970 Aminoacyl-tRNA biosynthesis
112160679 (vars2)
09180 Brite Hierarchies
09181 Protein families: metabolism
01007 Amino acid related enzymes [BR:
oml01007
]
112160679 (vars2)
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
oml03016
]
112160679 (vars2)
Enzymes [BR:
oml01000
]
6. Ligases
6.1 Forming carbon-oxygen bonds
6.1.1 Ligases forming aminoacyl-tRNA and related compounds
6.1.1.9 valine---tRNA ligase
112160679 (vars2)
Amino acid related enzymes [BR:
oml01007
]
Aminoacyl-tRNA synthetase
Class I (U)
112160679 (vars2)
Transfer RNA biogenesis [BR:
oml03016
]
Eukaryotic type
Aminoacyl-tRNA synthetases (AARSs)
Other AARSs
112160679 (vars2)
Prokaryotic type
112160679 (vars2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA-synt_1
Anticodon_1
tRNA-synt_1g
tRNA-synt_1_2
Val_tRNA-synt_C
tRNA-synt_1b
Motif
Other DBs
NCBI-GeneID:
112160679
NCBI-ProteinID:
XP_024151174
Ensembl:
ENSOMEG00000008360
UniProt:
A0A3B3BNW1
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All DBs
Position
LG13:complement(28810524..28821938)
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AA seq
1088 aa
AA seq
DB search
MWRTACLSGVRRAAKTPSQLGSVETRGRSCPLLCHQFLSSSSSSTRPRAEKRRRRLERDE
VIMTAQQQGTEGKEGKWSKTQEVVYRDPTPPGMRKDVSSVFPSSYSPEFVESSWYEWWEK
EGFFKPEQHDHLPHRTDQIFSLCIPPPNVTGSLHLGHALTVAVEDALVRWRRMQGCRVLW
VPGCDHAGIATQAVVERRLLGTKGKRRQDFTRDEFLQEVWKWKNEKGEEIYQQLRRLGAS
LDWSRARFTMDPGFSRAVTEAFVRLCDSGLIYRSEGLVNWSCALQSAISDIEVDWKDLCG
KTSLFVPGYEKLVEFGAMFTFAYPVEGFEAEVIVSTTRPETMLGDVAVAVHPDDPRYQAF
HGKQVRHPFTSRLLPIITDPTVDMELGTGAMKVTPAHDHVDFLLSQRHSLPHLSVIEGDG
RMSPLCGPWLQGVRRFDARQLVVDALAEKKLFRGEKSHAMTLPVCSRTGDIIEPLLKRQW
FMRCDRMAERAMQAVEDGELQIIPPHYAKTWKNWLSNISDWCISRQLWWGHQIPAYQVQI
VGSTSELQEQWVWGRSEEEARRRAASRYGVKPEDVVLTQDPDVLDTWFSSALFPFAMLGW
PEQTPDLKDFYPNSLLETGSDLIFFWVARMVMLGTELTGQLPFRQVLFHPLVRDKYGRKM
SKSLGNVIDPLDVIQGVSLQRLQDKVKEGNLDPREQLVAMEAQKKDFPKGIPQCGTDALR
FALCSHRVQGEDICLSVSQVLTCRHFCNKMWQTLKFTLGVLGENSAVVSTLKETVPAGSV
ERWICSRLYSTVLQCERAFEAYELHAVTAALYSFWVHNLCDVYMECVKPVLAKPEEGAGI
QNNAEPGASRSQEALSVLFHCVSVSLTLLSPFMPFITEELWQRLQPFTPTAPAHSSLSMQ
PYPQSSQLKHWHFSKEEEDFLLVQEVIRVARSLRARCGLTKEKPTMWVVCSPSQAQVLLH
FSSAVQTLGRMSSLQLHCPDGEGAKLSECSAPPPEGSLVGVVDHTCRVHLHLQDVVNVDK
QILQLSQKRDKLVSKLEEMLCRVQSPDHLTKVPAHVREQMDKKLSALKQELETTEDQLEL
LQKTQGGR
NT seq
3267 nt
NT seq
+upstream
nt +downstream
nt
atgtggaggacagcgtgtctgtccggcgtgaggcgggcagcgaaaaccccgtcccaactc
ggttctgttgagacacggggtcggtcatgtcccctgttgtgtcaccagttcctctcctcc
tcctcctcctccacgcggccccgcgcggaaaaacggaggcggagactggagcgagacgag
gtcatcatgacagcccagcagcaggggactgaaggtaaagagggaaaatggagcaaaaca
caggaagtcgtttacagagatccaacacctcctgggatgagaaaagatgttagctcggtg
ttcccgtcatcctatagtccagagtttgtggagtcaagctggtatgagtggtgggaaaaa
gagggcttcttcaaacctgaacagcatgatcacctgccccatcgcacggaccagattttc
tctttgtgcatcccgcctcctaatgtgaccggttctctgcatctgggccacgctctcacc
gtggctgtggaggatgctctggttcgatggaggcggatgcaaggctgcagagtcctttgg
gttcctgggtgtgatcatgcaggcattgcaactcaggcagtggtggagaggagactcctc
gggacgaaagggaagcgcagacaggacttcaccagagacgagtttctgcaggaggtgtgg
aagtggaagaatgagaaaggagaggagatctaccagcagctgagacggcttggagcctct
ctggactggagcagagccaggttcactatggatccaggttttagcagagctgtgactgaa
gcttttgtcaggctctgcgattcaggtctgatttatcgctcagagggtctggtgaactgg
agctgcgctctccaatctgccatctcggacattgaggttgactggaaggatctgtgtggg
aaaacctcattgttcgtccccggctatgaaaagctggtagagtttggcgccatgttcacc
tttgcgtatcccgtggagggctttgaggcagaggtgatagtgtccaccacccgtcctgag
acgatgctcggagacgtggccgtggccgtccaccccgacgatcctcgatatcaggctttt
catgggaagcaggtcagacacccgttcaccagcaggctgctccccatcatcacagaccca
accgtggacatggagctgggaacgggagctatgaaggtgacccctgctcatgaccatgtg
gacttcctgctgtctcagagacactcgctgccacacctgtctgtgattgagggagacggg
aggatgagccctctgtgtgggccgtggctgcagggcgtgaggcgcttcgatgccaggcag
ctggtggtggatgctctcgctgagaaaaagctgtttagaggggagaagagtcatgccatg
accttacctgtgtgcagccgcacaggtgacatcatcgagcctctcctgaagaggcagtgg
ttcatgcgctgtgacaggatggcagagagagctatgcaggccgtggaagacggagagctg
cagatcatccccccgcactacgcaaaaacatggaagaactggctgtccaacatcagtgac
tggtgcatatccagacagctgtggtggggccatcagatccctgcttaccaagttcagatt
gtgggttctaccagcgaactccaggagcagtgggtgtgggggcgcagtgaagaagaggcc
cgaagacgagcggccagcagatatggagtaaagccagaagacgtcgttctgactcaagac
ccagatgttctggatacttggttttcttcagcgctctttcccttcgccatgcttggctgg
ccagaacagactcctgacctgaaagacttctaccccaattctttgctggaaacaggcagt
gacctcatctttttctgggtcgctcgaatggtcatgctgggcactgagctgacgggacag
cttccgttccgacaggttttgttccaccctctggtgagagacaagtacggcaggaagatg
agtaaatctctgggaaacgtcatcgaccctttagatgtgatacaaggagtttcactgcag
agacttcaggacaaagtgaaggaaggaaatctggacccccgggagcagctggtagccatg
gaagcacagaagaaggacttccccaaaggaatccctcagtgtggaaccgacgcgttgaga
tttgccctctgctctcacagagtacagggagaggacatctgtctgtccgtctctcaggtc
ctcacctgcagacacttctgcaacaagatgtggcagacgctgaagttcaccctgggagtt
cttggtgaaaactcggcggtggtgtcgacgctgaaagagacggttcctgcaggcagcgtg
gagcggtggatctgctccagactctacagcacagtgctgcagtgtgagcgggcctttgaa
gcttatgagctgcacgctgtcaccgccgccttgtactccttttgggttcataacctgtgt
gatgtgtacatggagtgtgtaaaaccggtcctggcaaagccagaggagggggcggggatc
cagaacaacgctgagcccggtgccagcaggagtcaagaggccctctccgtcctcttccac
tgcgtgtcggtgtctctgacactgttgtcccctttcatgcccttcatcactgaagaactg
tggcagcggctgcagccattcacccccacagcgccggctcacagcagcctgtctatgcag
ccgtacccccagtcctcccagctgaaacattggcacttctccaaagaggaagaggacttc
ctgctggtccaggaggtgatccgggtggctcggtccctgcgagcgcggtgtggcctcaca
aaggaaaagcccaccatgtgggtggtgtgctcacccagccaggcccaagtgctcctacac
ttcagctctgcggttcagaccctaggccggatgtccagcctgcagctccactgtcctgac
ggagagggcgccaagctgtctgaatgctccgcccctccacctgaaggaagcctcgtgggt
gtggtagatcacacatgtagagtacaccttcaccttcaggatgtagtgaatgtggacaaa
cagatcctgcagctttctcaaaagagagacaagcttgtttcaaaactggaggaaatgctc
tgcagagtacaatcccctgaccacctgaccaaggttcctgctcatgttagggagcagatg
gacaagaagctttcagctctgaagcaggagctggaaactactgaagaccagctggagcta
ctgcagaaaactcagggaggaagatga
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