Oryzias melastigma (Indian medaka): 112160752
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Entry
112160752 CDS
T07439
Name
(RefSeq) transcription initiation factor TFIID subunit 4 isoform X1
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
112160752
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
oml03021
]
112160752
03036 Chromosome and associated proteins [BR:
oml03036
]
112160752
Transcription machinery [BR:
oml03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
112160752
Coactivators
SAGA/TFTC/STAGA complex
112160752
Chromosome and associated proteins [BR:
oml03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
112160752
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF4
TAFH
TAF
Motif
Other DBs
NCBI-GeneID:
112160752
NCBI-ProteinID:
XP_024151295
Ensembl:
ENSOMEG00000016761
UniProt:
A0A3B3CCX1
LinkDB
All DBs
Position
LG3:28020889..28126880
Genome browser
AA seq
1041 aa
AA seq
DB search
MAGASDPLEDMLYSEVDEKAVSDLVGSLESELTGQSNPVGKAGENGGAGSVPPANHHLGK
TLQPPVSITTLEQQQPGRRLKPEMRQEINSKEASQDKTDTSPPLDCAASFGEPSTTSTAC
VIASSNGSQSHGASITTLIASNVSTSQDGIGNRSTKVTAGAGETEAEPPRKRIAAPRRTA
SARIKSLNGAAVTTRRSSSCTAVEETASPADCSANTPNSTRPAPSSINTSTFTVSNASLP
VGQSAIALDRGTPTIALQRLPSHIVASIAQNGTSVSALVQQSARPGAAPAQGDPGKTDPG
ASTADKPSVDMPSQPVTNTVASAPSAVTPATSTTATTTTTQPLSTTTAALTATPACGTVQ
TTSVTATISIIRPTAPSPSPAVVTSAQTQPRPGLAAPQRIVAPQLIVRPPQQQTTIQLPP
GFTIPPGMVLVRTELGQLVMVPQQALAQAQAQAQAQNSISPRPATPTTGTTFRVTTPQPS
PVTPQTARQCPLTSANMAPSPSPTPSSPALQTSSSSSASSCPAIRPKGPVAPTVAVTAPQ
QAPVVMTPQAPSQPASQPVQPAQAGIAAAPGGPVVSQEMQENVKKCKNFLATLIKLASHN
SPSPETSKNVKALVQDLLDAKIEPEEFTSRLQTELKSSPQPYLVPFLKKSLPALRLSLLN
SQQSLTQPPQQGIKPAPGSTPPAIVAGPAVRISHPNSVSTTPGAGALPAGTLGHAAAMGV
KTGGAVSGQVRMPVVLTQSIRPQGAMGKGAIIQTGRSPMGLPAQICGNQKNKLNDPGGGS
FRDDDDINDVASMAGVNLNEESARILATNSELVGTQIRSCKDEAFLHPGLLHRRILETAK
KFGVTEVPMEAVTFISHATQSRLRTMVEKISIIAQHRLDSCKDDEYYEQSADVRSQLRFF
EQLERMEKQRKDEQEREILLKAAKSRSRQEDPEQARLKQKAKEMQQQELAQMRQRDANLT
ALAAIGPRKKRKVDSPGATPSGTEVSGGPAGSPAGSSTPSSSSRQYTRQRITRVNLRDLV
FYMEQERESARSLLLYRALLK
NT seq
3126 nt
NT seq
+upstream
nt +downstream
nt
atggcgggcgcctccgaccccctggaagatatgctttattcagaggtggatgaaaaagcc
gttagcgacctggtgggttcattggagtcagagcttactggacagagcaacccggtgggc
aaagcaggcgaaaacggaggcgctggctctgtgccccccgctaaccatcacttaggaaaa
acgctacaacctccagtgagcatcacaacactagaacaacaacaaccaggacggcgttta
aaacccgaaatgcgccaggagatcaactctaaagaggcgagccaggataaaactgacaca
tctcctcccctggactgcgctgcttccttcggcgagccctccaccacctcgaccgcctgt
gtgatcgccagcagcaacggctcgcaatcacatggagcatccatcacaacactgatcgcg
tccaatgtgtcaacttcccaagacggcatcggcaaccggagcactaaggtgaccgcgggc
gcaggtgagacggaggctgagccgccgaggaagcgcatcgcggcgccgaggagaaccgct
tcggcgcggatcaagagtttgaacggtgcagccgtgacgacgaggaggagcagcagctgc
acggcggtcgaggagaccgctagccccgcggactgcagcgcgaacacccccaactctacc
cgaccggcaccgtcttctatcaacacttcgacttttactgtgtcgaacgccagcctgcct
gtgggtcagtccgccatcgctctggaccgggggactcccaccatcgctctgcagagactc
cccagccacatagtggccagcatcgcccagaacggcaccagcgtttcggccctggtgcag
cagagtgctcgaccgggagctgcccctgcccagggggaccccggcaaaacggaccccggg
gcttccacagcagacaagcccagcgttgacatgccaagccagcctgtaacaaacactgta
gcctctgctccgtctgctgtcacaccagcaacaagcacaactgcaactacaactaccacc
cagcctctgagcactacaactgcagcactgacagccacccctgcgtgtgggactgttcag
accacatcagtgactgctaccatcagtataatccggcccaccgccccctctcccagtccg
gctgtggtcacgtctgcacagactcaacctcgtcctggacttgcagcccctcaaaggatt
gtagctccacagctgattgtcagaccgccccagcagcagacaaccattcagctgccccca
ggatttaccatcccaccagggatggttctggtccgtacggagttgggtcagttggtgatg
gttccccagcaggctttggctcaagctcaagcccaagctcaggcccaaaacagcatctct
ccacgacccgccacccccaccacaggaaccaccttcagagtgacaacgccacagccgtct
cctgtgacccctcagaccgccaggcagtgtcctctgacctcggccaacatggcgccctct
ccctctcccactccttccagccctgccctgcagacctcctcttcttcctctgcttcctcc
tgtcctgcaatacgccctaagggccccgtggcgcccaccgtggcagtgacggctccacag
caggcccctgtagttatgaccccccaggccccgtctcagcctgcctctcagccagtgcag
cctgcacaagcgggcatcgccgcagctcccggaggtcctgtcgtgtcccaggaaatgcaa
gaaaacgtgaagaagtgtaagaatttcttggctactctcatcaaacttgcatctcacaac
tctccgtccccagagacgtccaagaacgtaaaggctctggtccaagacctgttggatgcc
aagattgaacctgaagagttcaccagccgcctgcagactgagctgaagtcctctccacag
ccttacctggtgccttttcttaagaagagcctcccggccctgaggctgtctctgctgaat
agtcagcagtccctgacccagcccccgcagcagggaatcaaaccagcacccggcagcacc
ccgcctgccatcgtggccgggccagctgtgcgcataagccaccccaacagtgtcagcacc
actccgggcgccggcgcactgcctgctgggacgctcggacatgcagctgcaatgggcgtg
aaaactggaggtgctgtcagtggccaggtccgcatgcccgtggtgctcacacagtccatc
agaccacaaggcgcaatgggaaaaggagccatcatccaaacaggcaggagtcccatgggc
ctgcctgctcagatctgcgggaatcagaaaaacaagctcaacgaccccgggggaggctcc
ttcagagatgacgacgacattaacgacgtggcatccatggccggagtaaatctgaacgaa
gagagcgcacgaatactggcaaccaactcggagctggtgggaactcagatccgctcctgt
aaagacgaggctttcctgcatccgggcctgctgcaccggcggattctggaaactgctaag
aagttcggagtgacagaagtccccatggaggcggtgacgttcatctctcacgccacgcag
tcgcgacttcggactatggtggaaaagatttccatcattgcgcagcacagactggattcc
tgtaaggacgacgagtactacgagcagtctgcagacgttcgctcgcagcttcgcttcttc
gagcagctggagagaatggagaagcagaggaaggacgagcaggagagagagatccttttg
aaggctgcgaaaagtcgatccaggcaagaagacccagagcaagctcggctgaaacagaaa
gctaaggagatgcaacagcaggaactggcccagatgaggcagcgagatgccaacctcaca
gcgctagctgccatcggacctcgaaagaaacgcaaagtggactctccgggggcaacacca
tcagggacagaggtttctggaggcccagcaggctctccggccggctcctccacgccgtcc
tcctcatcccgccagtacacgcggcagcgcatcactcgggtcaacctcagggacttagta
ttctacatggagcaggagagagagtccgcccgctccctcctgctctaccgagccctcctc
aagtag
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integrated database retrieval system
