Oryzias melastigma (Indian medaka): 112160792
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Entry
112160792 CDS
T07439
Name
(RefSeq) homeobox-containing protein 1 isoform X1
KO
K24885
homeobox-containing protein 1
Organism
oml
Oryzias melastigma (Indian medaka)
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
oml03000
]
112160792
Transcription factors [BR:
oml03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain POU
112160792
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HNF-1_N
Homeodomain
Homeobox_KN
HTH_3
HTH_31
HTH_26
CUT
AbiJ_NTD3
HTH_24
HTH_37
Motif
Other DBs
NCBI-GeneID:
112160792
NCBI-ProteinID:
XP_024151367
Ensembl:
ENSOMEG00000017612
LinkDB
All DBs
Position
LG3:28949299..28969120
Genome browser
AA seq
513 aa
AA seq
DB search
MFQQNEEPRFTIEQIDLLQRLRRTGITQAEVLHALDTLDHIDRQHGHKLACKPSYVPPTS
SLSSSNPAFASSSMTSTSTQTSFPEHRLSLSPTNNFDTASPPLPVPASPVMVPTVVQNGL
VPVTNGKLSPPRFSLGVVGGNVPGPGYAFEAAEEYIDVDEKVEDLMRRDSAVIKEEIKSF
LANRRISQAVVAQVTGISQSRISHWLLQQGSDLSEQKKRAFFRWYQLEKTNPGATLAMRA
APLALDDMVEWHQTPLPFNSAPTGFRLRRGSRFTWRKECLAVMESYFSDNQYPDEAKREE
IATACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKDIKRRANIEAAILESHGIEVQSPG
GQSVSDEVDGNEFPDQGCEASLLDKRASARQLAFSRADLSSPTQAPTPFPGWFSALARGG
VSGQRGISLIGRSLLSASGAPAEASRLAGASWSPPSPSLQDEPSIHRAPSEPQDAAGLGK
NAPDSRSPASAGQLEEAGSSVGNEIKMESLEDD
NT seq
1542 nt
NT seq
+upstream
nt +downstream
nt
atgttccagcagaatgaggagcctcgcttcaccatcgagcagatcgacctcctccagagg
ctccggcggactgggatcacccaggcggaggtcctccacgctctggacacgctggaccac
atagacaggcagcatggacacaaactggcatgcaagccttcatacgtaccacccacgtct
tccttgtcttcctctaaccccgccttcgcctcttcctccatgacttccacctcaactcag
accagttttcctgaacaccggctctcactgtcacccactaacaacttcgacactgcgtct
ccgcctctgccggttccagcctcaccggtcatggtgccgactgttgtacagaacggcctg
gtacccgtcaccaacgggaaactctcaccgccgcggttttctctcggtgtggtgggtggg
aatgtacctggaccaggttacgccttcgaggccgccgaggagtacatcgacgtggatgag
aaggtggaggacttgatgaggagggacagtgcagtgatcaaagaggagatcaagtctttc
ctggctaacagacgcatctcccaggcagtggtcgctcaggtaacgggaatcagccagagt
cggatctcccactggctcctgcagcagggatcggacctcagtgagcaaaagaaacgagcc
ttcttccgctggtaccagctggagaagaccaaccctggtgccaccctggccatgcgagct
gcccctctggctctggacgacatggtggaatggcaccagaccccgctcccgttcaactcg
gcgcccacaggcttccgtctgagacggggaagccgcttcacgtggaggaaagagtgtctg
gctgtcatggagagctactttagtgataaccagtatccagacgaagccaaaagagaagag
atcgccaccgcctgcaacgctgtgattcaaaaaccagggaagaagctgtctgatttggaa
agagttacctctctaaaagtctacaactggttcgccaaccgccgcaaagacatcaagagg
cgtgccaacatagaagcagccatcctcgagagccatggtatcgaggtccagagtccagga
ggtcagtcggtcagcgatgaggtggacgggaatgaatttcctgaccagggctgtgaagca
tccctgttagacaagagagcttcagcccggcagttagctttcagtcgagcagatctgtct
tctccaacccaggctcccacgccatttcccggctggttttccgctctggccagagggggc
gtgtcaggacagaggggcatctctctgattggccgctctctcctctcagcgtcaggtgct
ccagccgaagcttccaggctagcgggtgcgtcctggtctcctccctccccttccctgcaa
gacgagcccagcattcacagagcgccgtcggaacctcaggacgcagcaggtttggggaaa
aacgcgcctgatagtagaagcccggcttccgccggtcagctggaagaagcggggagcagc
gtggggaacgagatcaagatggagtctctggaggacgactga
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