Oryzias melastigma (Indian medaka): 112160868 Help Entry 112160868         CDS       T07439                                  Symbol ddb1 Name (RefSeq) DNA damage-binding protein 1   KO K10610   DNA damage-binding protein 1 Organism oml  Oryzias melastigma (Indian medaka) Pathway oml03420   Nucleotide excision repair oml04120   Ubiquitin mediated proteolysis Brite KEGG Orthology (KO) [BR:oml00001]  09120 Genetic Information Processing   09123 Folding, sorting and degradation    04120 Ubiquitin mediated proteolysis     112160868 (ddb1)   09124 Replication and repair    03420 Nucleotide excision repair     112160868 (ddb1)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04121 Ubiquitin system [BR:oml04121]     112160868 (ddb1)    03400 DNA repair and recombination proteins [BR:oml03400]     112160868 (ddb1) Ubiquitin system [BR:oml04121]  Ubiquitin ligases (E3)   Multi subunit Ring-finger type E3    Cul4 complex     Adoptor protein      112160868 (ddb1) DNA repair and recombination proteins [BR:oml03400]  Eukaryotic type   SSBR (single strand breaks repair)    NER (nucleotide excision repair)     GGR (global genome repair) factors      Cul4-DDB2 complex       112160868 (ddb1)     TCR (transcription coupled repair) factors      Cul4-CSA complex       112160868 (ddb1) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  MMS1_N CPSF_A Motif Other DBs NCBI-GeneID:  112160868 NCBI-ProteinID:  XP_024151490 Ensembl:  ENSOMEG00000006181 LinkDB All DBs Position LG3:4361339..4417270 Genome browser AA seq 1140 aa AA seqDB search MSYNYVVTAQKPTAVNACITGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGR ISVMELFRPKGESKDLLFILTSKYNACILEYKQNGDSIDIITRAHGNVQDRIGRPSETGI IGIVDPECRMIGLRLYDGLFKVIPLDRENRELKAFNIRLEELQVIDVHFLYGCQAPTVCF IYQDPQGRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIPVPEPFGGAIIIGQESITYH NGDKYLAIAPPTIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEELMDGTVALKDL HVELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNEQGSYVTVMETFTNLGPIV DMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSEAGRE TDDMLVLSFVGQTRVLMLSGEEVEETELPGFVDNQQTFYCGNVAHQQLIQITSGSVRLVL QDSKALVSEWKEPQGRNISVAACNHTQVVLAVGRALYYLQILAGELKQISTTEMEHEVAC LDITPLGESSSESPLCAVGLWTDISARVLKLPCFSPLHKEMLGGEIIPRSILMTTFEGSY YLLCALGDGALFYFGLDLQTGALSERKKVTLGTQPTVLRTFRSLSTSNVFACSDRPTVIY SSNHKLVFSNVNLKEVNYMCPLNSEGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYES PRRICYQEVSQCFGVLSSRVEIQDASGATSAVRPSASTQALSSSVSSSKLFPSSTAPHET SFGEEVEVHSLLVVDQHTFEVLHAHQFLPSEYALSLVSCRLGKDPSVYFIVGTAMVYPEE PEPKQGRIIVFHYTDGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTAEKELR TECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEIL DDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGVFHLGEFVNVFCHGSLVLQNLGES STPTQGSVLFGTVNGMIGLVTSLSEGWHSLLLDLQNRLNKVIKSVGKIEHSFWRSFYTER KTEQATGFIDGDLIESFLDLGRAKMQEVVSTLQIDDGGGMKREATVDEVIKIVEELTRIH NT seq 3423 nt NT seq  +upstreamnt  +downstreamnt atgtcgtacaactacgtggtaacagcgcagaagcctacagcagtcaacgcctgcataaca ggtcatttcacatctgcagaggacctcaatctgctcatagccaaaaacacacgtttggaa atctatgtggtcacagcagaaggtctgcggcctgtcaaggaagttggcatgtacggcaga atttctgtgatggaactcttccggccaaagggtgagagtaaggacctgctgttcattctc acatccaagtacaacgcttgcatcctggagtacaaacagaacggagacagcattgacatc atcacccgcgctcatgggaatgtgcaggaccgtattggacggccatcagagactggcatt atcggcattgtggatccggagtgtcgcatgattggtctgaggctgtatgacggtttgttc aaggtgatcccgttggaccgcgagaaccgtgagctcaaagccttcaacatccgtctggag gagctgcaggtcatcgatgtgcacttcctctacggctgccaggctccaactgtgtgtttc atctatcaggacccacagggacgccatgtgaagacctacgaggtttctctgagagagaaa gagttcaacaaaggtccatggaagcaggagaacgtggaggccgaggcatcgatggtcatt ccagtgcctgagccatttggtggagctataatcataggacaggagtccatcacctaccac aacggagacaaatacctggccattgcacctcctaccatcaagcaaagcaccatcgtctgc cacaaccgagtggaccccaacggctcccgctacctgctgggggacatggagggccgcctg ttcatgctgctgctggagaaggaggagctaatggacggcaccgtggcgctcaaagacctg cacgtggagctgctcggagagacatccattgctgagtgtttgacctacttggacaacggt gtggtgtttgtgggctccagactcggtgactctcagcttgtgaagctcaacgttgacagc aatgagcagggctcctacgtgactgtaatggagaccttcactaatctgggacctattgtg gacatgtgtgtggtcgacctggagcggcaaggccagggacagctggtgacttgctcagga gcgttcaaagagggctctcttcggatcatccgcaacggcattgggattcatgagcatgcc agtatcgacctgccaggaatcaaaggtctgtggccgctgcgctcagaggcaggcagagag actgacgatatgctggtgctgtcgttcgtggggcaaacacgcgtattgatgctgagtgga gaagaggtggaggagactgaacttccaggctttgtggacaaccagcagaccttttactgt ggcaacgtggcgcaccaacagctcattcagatcacatcaggctctgtgcgactggtgctt caggacagcaaagcgttagtgagtgaatggaaggagcctcagggtcgcaacatcagcgtg gctgcatgtaatcacacacaagtggtgctggcggtggggcgcgccctctactacctgcag atcctggcaggagagctcaaacagatcagtaccacggagatggagcacgaagtggcgtgt ctggacatcacgccactgggggagagcagcagcgagtcgccgctctgtgctgtgggattg tggactgacatctctgctcgggtgctgaaactcccctgcttcagtccgctgcataaggag atgctgggtggagagatcatcccccgctcaatactaatgaccacatttgaaggcagctac tacctgctgtgtgccctcggagatggagcgctcttctactttggtcttgacctgcagacg ggtgcactcagtgagcgcaagaaagtcacccttggcactcagcccaccgtactgaggact tttagatccttgtcaacctccaacgtctttgcctgctctgaccgacccacggtcatctac tcatccaaccacaaactggtgttttccaacgtcaacctcaaggaggtcaattacatgtgc ccactcaactctgaaggctatcctgacagtttggctttggccaacaacagcactctgacc attggcaccattgatgaaattcagaagcttcacatccgtacagttcctctctatgagtct cccaggcgcatctgctaccaggaggtttcccagtgctttggggttctgtccagcagggtg gagattcaggatgcaagcggtgccacatctgcagtaaggccaagtgcaagcactcaggca ctgtccagcagcgtgagctccagcaagctcttccccagcagcacagctccacatgagacc tccttcggtgaggaagtggaggttcacagtctgttagttgtggatcaacacacctttgaa gttctccacgcccatcagttcctccccagcgagtatgccctcagcttggtgtcatgtcgt ctgggaaaagacccatctgtgtacttcattgtgggaactgccatggtgtacccagaggag cctgaacctaagcagggccgcatcatcgtcttccattacactgacggtaagctgcaaacc gtggcagagaaagaggtgaaaggagccgtctactcaatggtggagttcaacggcaagctg ctggccagcattaatagcacagtccgtctgtacgagtggacggctgagaaggagctgagg accgagtgcaaccactacaacaacatcatggctctatacctgaagactaaaggagacttc atcctggtgggggatctgatgaggtctgtgctgctgctggcctacaaacccatggaaggc aactttgaagagattgctcgtgatttcaaccctaattggatgagcgccgtggagattctg gatgacgataactttctgggagcagagaacgcattcaacctgtttgtctgccagaaggac agtgcggccaccacagacgaggagcggcaacacctgcaggaggtgggggtttttcacctt ggcgagtttgttaatgtcttctgccatggctcgctggtactgcagaacctcggggagagc tccactcccacccaaggctccgtgctctttggcaccgtcaacggcatgattggtctggtt acatccctgtctgaaggctggcacagtcttctcctggacctccagaaccgcctcaacaaa gttatcaaaagtgtgggcaagatcgagcacagcttctggaggtccttctacacagagcgt aaaacggagcaggccacaggattcatagacggcgacctgatcgaaagtttcctggacctc ggccgggcaaagatgcaggaggtcgtcagcactctccaaatcgatgacggcggcggcatg aagcgtgaggccacagtggacgaggtgattaagatcgtggaggagctgacgaggatccac tag

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