Oryzias melastigma (Indian medaka): 112160993
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Entry
112160993 CDS
T07439
Symbol
ddx21
Name
(RefSeq) nucleolar RNA helicase 2
KO
K16911
ATP-dependent RNA helicase DDX21 [EC:
5.6.2.7
]
Organism
oml
Oryzias melastigma (Indian medaka)
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
oml03009
]
112160993 (ddx21)
03036 Chromosome and associated proteins [BR:
oml03036
]
112160993 (ddx21)
Enzymes [BR:
oml01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
112160993 (ddx21)
Ribosome biogenesis [BR:
oml03009
]
Eukaryotic type
Pre-60S particles
Helicases
112160993 (ddx21)
Chromosome and associated proteins [BR:
oml03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
112160993 (ddx21)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
GUCT
Helicase_C
ResIII
CMS1
Cas3-like_C_2
ERCC3_RAD25_C
LprI
Motif
Other DBs
NCBI-GeneID:
112160993
NCBI-ProteinID:
XP_024151706
Ensembl:
ENSOMEG00000004523
LinkDB
All DBs
Position
LG3:complement(21278928..21288142)
Genome browser
AA seq
775 aa
AA seq
DB search
MTHFDSASRVPFHPRARKLACVHAEGLHQGREMPSKIIFDSQEETMDEELDTVADAKASK
KNKNKEEKKLKKKQQQLEEQEDADCEAPAPKKKKKKDKVAVEELNGHTEEANGFSDGVET
PKQKTKKKKDGDTDKKQKQKAIAESAIKEHSTTNTPSPSSDDSCCDSEKETEETPEQKEG
AFSNFRISQVTINKLKARGVSYLFDIQVKTFNPVYDGEDVIAQARTGTGKTFSFAIPLVE
RLQKESGGMARGRPPKVLVLTPTRELAIQVAKDFKDVSKKLSIACFYGGSSYNPQIDAIR
NGIDILVGTPGRIKDHLQNNKLNLSELKHVVLDEVDQMLDMGFAEQVEEILSSSYKKDGD
TNPQTLLFSATCPPWVYEVAKKYMRPGCKHVDLIGKKTQKAATTVEHLAIACHWSQRAAV
IGDVIQVYSGSHGRTIVFCETKKDANELSMNASIKQSAQTLHGDIPQKQRELTLKGFRNG
AFEVLVATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTGVCICFYQRKEE
EQLRYVENKAGITFRRVGVPTSNDIIKASSKDAVRFLDSVPVTAIEYFKGSAEKLIQERG
AVEALAAALAHISGATSLEQRSLLNSDAGYTTIQMTCSQQMHNLGYAWRSIKEQLGDEFE
NHIHRMTFLKGKSGVCFDVPVDKVKEMMSNWQDGRRWQLTVATELPELEEKQLGNRGDRS
FGGGNRGERRGFRGGRGGGQFRGNGNNRFRNSGGDFNNNSNRGGHKRSFSQAFDY
NT seq
2328 nt
NT seq
+upstream
nt +downstream
nt
atgacgcactttgactccgcctcgcgcgttcctttccatccgcgtgcccgtaagttagct
tgtgtccacgccgagggtctccatcagggaagagaaatgccgtcaaaaatcatctttgac
agtcaggaagaaactatggatgaagaactggacactgtggcggacgccaaagcctcaaag
aagaacaagaacaaggaggaaaagaagctgaagaaaaaacagcagcagttggaggagcag
gaagatgctgactgtgaggccccagcaccaaaaaagaagaagaaaaaagacaaggtggca
gtggaagaactaaacggccacacagaagaggccaatggttttagcgatggtgtagaaacg
ccgaagcagaagaccaagaagaaaaaagatggcgacacagataaaaaacaaaagcaaaaa
gcaattgcagaaagtgcaatcaaagaacattccaccaccaacacaccatccccgtccagt
gatgactcctgctgtgacagcgagaaagaaacggaagagactccagaacagaaagaagga
gcattttccaacttcagaatctctcaagtcacaatcaataaactgaaagctcggggagtt
tcttacctttttgatattcaggtgaagacatttaatcctgtttatgatggggaggatgta
attgctcaggcgcgcacaggaacaggaaaaactttctcctttgccatacctttggtggag
aggctgcagaaagaaagtggagggatggctcgaggtagaccccccaaggtcctggtcttg
actcctaccagagagttggccatccaggtggctaaggacttcaaagacgtctccaagaag
ctgtccattgcttgtttctatggaggcagttcatacaaccctcagatcgatgcaattcgc
aacggtattgatattctggttggaactcccggccgcatcaaagatcaccttcagaacaat
aaactcaacctttctgaacttaaacacgtggttctggacgaagtggaccaaatgctggac
atgggctttgccgaacaggttgaagaaattttgagttcatcatacaagaaagatggagat
accaacccacagactctcctgttttcagccacttgccccccttgggtgtatgaagtggcc
aagaaatacatgagaccaggttgcaagcatgtggacttgattggcaaaaagacccaaaaa
gctgcgactactgttgaacatctggctatagcatgccactggtcacagcgtgcggcagtg
ataggcgatgtcatccaggtgtacagcggcagccatggccgaaccatcgtcttctgtgaa
actaagaaagatgcaaatgagctctcaatgaatgcgtccatcaaacagagtgcccagacc
ctccacggggatattcctcagaaacagagagagttaacactgaaaggtttcagaaatgga
gcttttgaggttctggttgctacaaatgtcgcagctcgtggactagatatccctgaagtc
gacttggtcatccagtcttctccacctaaggacgtagagtcatacatccaccgctcaggt
cgtacaggccgagcgggcagaactggagtctgcatctgtttctaccagagaaaagaagag
gaacagctgcgctacgtggaaaacaaagctggcatcacgtttagacgagttggtgtaccg
acctccaacgacatcatcaaggcatccagcaaagatgccgtcagatttctggattccgtt
ccggtcacagccattgaatatttcaaagggtctgcagaaaaactgatccaggagagagga
gcggtggaagctttggctgcagctctggctcacatttcaggagccacaagtctggagcag
agatccctgctcaactctgacgctggttacaccaccatacagatgacgtgctcgcagcag
atgcataatctgggttatgcctggagaagcattaaagaacagttaggagacgagtttgaa
aaccacattcacagaatgacgttccttaaaggcaaatcaggagtttgctttgatgtccca
gttgataaagtcaaagagatgatgagcaactggcaagacggtcgtcgctggcagctgact
gtagccacagagctcccagagctggaggagaagcagctcggtaaccgtggtgacaggagc
ttcgggggtggcaaccgcggcgaaagaaggggcttcagaggtggaaggggaggagggcaa
tttagggggaatggcaacaacaggttccgcaacagtggaggcgacttcaacaacaacagt
aaccgaggaggacacaaacgctccttcagtcaagcttttgattactga
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