Oryzias melastigma (Indian medaka): 112161057
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Entry
112161057 CDS
T07439
Symbol
chd9
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 9 isoform X1
KO
K14438
chromodomain-helicase-DNA-binding protein 9 [EC:5.6.2.-]
Organism
oml
Oryzias melastigma (Indian medaka)
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
oml03036
]
112161057 (chd9)
Chromosome and associated proteins [BR:
oml03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
112161057 (chd9)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD6-9
Upf2
BRK
Helicase_C
Chromo
ResIII
DEAD
HTH_Hrp3
Chromo_MIT1
Motif
Other DBs
NCBI-GeneID:
112161057
NCBI-ProteinID:
XP_024151792
LinkDB
All DBs
Position
LG3:26917368..27014381
Genome browser
AA seq
3200 aa
AA seq
DB search
MDFFDDPNLFEGGLEGLEEDGFPPGPSLVDELNFSADFEPLQVETLGPGKHQDMMPAVSA
QQALPNYSQQMGHYAGIKPQNPIAQAFSGPQSAGCGIMADQLGQFHNPAIGQVPQSNGLF
CNSGSPMWGNQDQNGNVFHPLSQQQQQLCHQQLHNQQLHVQQHAQQQNLSCRHQQEEQQH
RMRQQQLQQQQQSHHQHLLNQHRQMNTSVVSLQQQHHNFSFHQGGQSNSQQQVPHTQQPI
QHQITQREAQFYSRVHPSKSYLENTSLSRTPLQIQQQDSYHALRRGQAFPGPGLEDSILS
HQTHSSSRVQSLSTCSVTSANAYQPALYPAYPGESEIPSFSQLSSSTATVSGPTATSSLT
STLPGLSGAACQFQSPALMRQLHTKTTINQADECSFQVLGCSVETQKNCKSSGMLDETMK
CYPGIGRPLPSEQPQRRGAINTNGYQALGDGLLPSEAQDSELENLEPTDLLPDLLPQLED
AFKAESWIEASHKGGEDSKLTSIEYKAEKPRKNINGPGSQVCVLSPPVKSNSSSSSSSSS
SSSSSSSSSSSPSEKRVPRRTHQQMESNLQEKQEKANRIISEAIAKARQRGEKNIPRVMS
PESFPSSSAQFKAHRDRGHKGNGKARSKDKSSKRACIVQSKPKQKAKIGKIVIKIGKKKK
RKPESSEEESDDDPPLRHTSKDDDSKRRSNRQVKRKKYTEELETRLSDEEVKVIVKAKKT
NTAASKQPSVQLFVENPTEEDAAIVDKIMSSRMAKKEVSPGVVVEVEEFFVKYKNYSYLH
CEWATEQQLEKDKRIQQKIKRFKMKQAQRALFFADMEEEPFNPDYLEVDRVLEVSYCEDK
DTGQEVVYYLVKWCSLPYEDSTWELKDDVDQSKIEEFEQLQAAKPDSRRVERPPANLWKK
KEHSREYRNGNMLRDYQLEGVNWLLFNWYNRRNCILADEMGLGKTIQSITFLEEIHRIGI
KAPFLIIAPLSTIANWEREFHTWTHLNVIVYHGSVVSRQMLQQYEMYFRDAQGRAIRGAY
RFQAVITTFEMILGGCPELNAIEWRCVIIDEAHRLKNKNCKLLEGFKLMNLEHKVLLTGT
PLQNTVEELFSLLHFLEPTRFPSENTFMQEFGDLKTEEQVQKLQGILKPMMLRRLKEDVE
KKLAPKEETIIEVELTNIQKKYYRAILEKNFSFLAKGAGQANMPNLVNTMMELRKCCNHP
YLIKGAEEKILEDFREVYNPSAPDYHLQAMVQSAGKLVLIDKLLPKMKAGGHKVLIFSQM
VRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINL
TAADTCIIFDSDWNPQNDLQAQARCHRIGQNKAVKVYRLITRNSYEREMFDRASLKLGLD
KAVLQSMSGRDNSLGGGSGGGAVQQQLSKKEIEDLLRRGAYGAIMDEEDEGAKFCEEDID
QILQRRTKTITIESEGRGSTFAKASFVASGNRTDISLDDPNFWDKWAKKADIDMEMVNGR
NSLVIDTPRVRKQTRPFSATKDELAELSEGESDGDETKPKLRRNDRLNSYGRTECFRVEK
NLLVYGWGRWKDILNHGRFKKQLTEWDVESICRALLAYCLVHYRGDDKIKSFMWDLIAPT
EDGRTKELQNHLGLSAPVPRGRKGKKMKTQSSSFDIHKAEWLRKHNPEHILLDDGYKKHL
KHHCNKVLLRVRMLYYLKQEVIGSLAQKVLDGVDSSEIKIWVPDPDHSELPALWWDAIAD
KCLLLGIFKHGYEKYNTIRADPTLCFLERVGRPDEKAIAAEQRANDLMDGDVDDPEYKPA
PALLKDDMEDDASSPGDLVVSDNAGDAAPVMEGQTAYWPSPSILTARLRRLITASQRFTK
TRQIMHIHQAQSQTQAVSQQPMVLSTAFCPLPPTLNDTLNPKMAAKIERQQRWTRREEAD
FYRVVSTFGVVFDPSLGRFDWTKFRAMARLHKKTDESLQKYLCAFTAMCRRVCRLPPKEG
DSAVDPSLTIQPITEERASRTLYRVELLRQVREQVLRHPLLYERLPLCQMSSDLPVWWEA
GAHDRDLLIGAAKHGVSRTDYHILRDPELSFMAAQRNYSQNKAAQQQAHLPAPHLHPQYQ
AASAGLTGSPMPPSAQKDADPCGVIPKVEPASEEEEEEAKERQVENWSAPEVLSAPSVLE
EKPVLPVRDMEKQMVAARTKPLTPNSSEKKPKKSSKRGRKEARRGSESDSDGSSSSSSSR
SSSSSSSSSSSSRSGSSSSSSSTSCSSGSSSSSSSSSSSSDDSESEGEEEKKKVPAAASV
KGFDEDSVASLSAARDEAQDAHLSENGVSSNSSHPFQGGGYMLAASYWPKDRVIINRLDS
ICQAVLKGKWPGPRRVYEPGSAVASFYTTKLLDNASTSVSEDPSASPQGSKVTKHVAENK
EFSVKLNDQEGGLKLTFQKQGLPLKRPLEPEEGHQAQQQYLARLQELQNASDTGLADITK
PQSNFQTVPPGLTSQMRLNGALDGQPAVKKRRGRKKNVEGMDMLFMNRNQVPAAPHQVPP
GWGGIGQVGMSAAAMPNYSPSTSQVPADTESRVPVINLKDGTRLAGDDAPKKKDLEQWLS
EHPGFVADTGAFIPGVNKMQMQFHFQDGRPKQKRHRCRNPNKIDVNSLTGEERVQIINRR
NARKIGGAFAPPLKDLSRFLQENPEYGVPPEWADVVKQSGYLPESMFDRILTGPIVPEEV
SRRGRRPKNPLAKMAASAPNPAASALGLNPVLANGMLPGMDLTSLQAFQQNLQSLQSLQL
TAGLLGLPSDAGNLAASNLAAMFPMMLSGMAGMPNLLGMSNLLGKPAQEGAGGSEEKTKG
TDETSASEAPSHTSDNKGERTEDSDGTPSSTSSSSSSATTTQSASAASAATSQPLSLNPL
LLSSMLYPGMLLTPGLNLPVSATQQQSSNNDPSTLPSAAAAPATPQSSLQGAEQPQTQKD
QEEEDDEAPEETVDEEDDEDEEEGGAETEEQSGNESEMNEQEEDEGSENEEEEREEEEEE
NTDYLTDSNKENETDEENNEVTIRGGGLKHVACAEDEDFIQALDKMMLENLQQRSGEAVK
VHQLDVAIPLQLKSQLKKGGSGQQCIMEGDSEGSDTMQFVMLTRKGNKQQYKILNVPLSS
HLAANHFNQQQAEQEERMRMKKLTLDINERQEQEDYQEMMQSLAQRPAQANTNRDRRPRY
QHPKGAPNADLIFKTGGRRR
NT seq
9603 nt
NT seq
+upstream
nt +downstream
nt
atggacttttttgacgaccctaacctctttgaaggaggtttggaagggttggaagaggat
ggcttccccccggggccatcacttgtggatgagctcaacttcagtgccgattttgaaccc
ctccaagtggagacacttggccccggaaagcatcaagacatgatgccggcagtctcggct
caacaggccctacccaattacagtcagcaaatgggtcattatgctggaattaagccgcag
aaccccatcgcacaggccttttctggtcctcaaagcgcaggatgtgggatcatggcagac
cagcttggccagtttcacaacccagcaattggtcaagtgcctcaatccaatggattgttc
tgcaacagtgggagtccaatgtggggcaatcaagaccagaatggtaacgtgttccacccc
ttatctcagcagcagcagcagctttgtcatcagcaattgcacaaccagcaactgcatgtc
caacagcacgcacaacagcaaaacctctcctgccgtcatcaacaggaggagcagcaacac
cgaatgcgacagcagcagctgcagcagcagcagcaaagtcatcatcagcatctgttaaac
cagcaccgacaaatgaacacatcagttgtttccctgcagcaacagcatcacaacttctcc
ttccaccagggaggccagtccaacagccaacagcaagtaccacatactcagcagccaatc
caacaccaaattactcagagagaagcacagttttattcaagggttcatcccagtaagtct
tatttagaaaatacttctctgagtaggactccgttacaaatacagcagcaggatagttac
catgcattgcggagaggtcaagcctttcccggaccaggactggaagactctatcctatca
caccagacgcattcatcatcaagagttcagtccctttcaacatgctctgtcacttctgct
aatgcttaccaaccagctctgtaccccgcgtaccccggggagtcagaaatacccagtttt
agtcagctgtcttcatctacagccacagtatctgggcccactgccacttcatctctcact
tctacactgcctgggctctcaggggcagcatgccagttccagtccccagctcttatgcgt
cagctgcacactaaaacaaccatcaaccaggcagacgagtgctccttccaggtcttgggg
tgctccgtcgagacccagaaaaactgcaagtcatcggggatgcttgacgaaacgatgaag
tgttaccctggcattggcaggcccctgccctctgagcagcctcagcgccgtggggctatt
aacactaatggataccaagccttaggagatgggcttttgccttcagaagcccaggattca
gagctggagaacctggaacctactgacctgctacctgaccttctgccccagctggaggac
gctttcaaggctgaatcatggatagaagccagtcataaggggggtgaagacagcaaactg
acatccattgaatacaaagctgaaaagcctcgaaagaacatcaatggtccgggaagccag
gtgtgcgtcctcagtcctccagtgaagagcaactcgtcgtcgtcgtcttcttcctcttcg
tcctcttcatcatcgtcctcgtcgtccagctccccgtcggagaagagggtacctcggagg
acgcatcaacagatggagtcgaatcttcaggagaagcaggagaaggcaaatagaatcata
tcagaggctattgctaaagcccggcaacgaggggagaagaacatcccacgggtcatgagc
ccagagagtttccccagttcttctgctcagttcaaggcccaccgggaccgtggccacaaa
ggaaatggcaaggcccggtccaaagacaagtcatcgaagagggcctgcattgtacagtcc
aagccaaagcagaaggccaagatcgggaaaattgtcataaagattggaaaaaagaagaaa
cgaaagccggagtcttccgaggaggagtcggatgacgatcctccccttcgacacacttct
aaagatgacgactctaagaggcgttctaaccgacaggtgaagcgaaaaaagtacactgaa
gagctggagaccaggctgtccgatgaagaagtcaaggtgattgttaaagccaagaaaacc
aacacagcagcatccaagcaaccgtccgtgcagctgtttgttgagaatcctacagaggag
gacgccgccatcgttgataaaatcatgtcttctcgaatggcaaagaaggaggtctccccg
ggagtggtggtagaagtggaggagttttttgtaaaatacaagaactactcctacttacac
tgcgagtgggccacagagcagcagctggagaaggacaagaggattcagcagaagatcaaa
cgcttcaagatgaaacaagcacagagggccctcttctttgcagatatggaggaggaacct
tttaatcccgattatctagaggtggaccgagtactggaagtgtcgtattgtgaggacaaa
gacacagggcaggaagtggtgtattacctggtgaagtggtgctctctgccttatgaggac
agcacctgggagctgaaggacgacgtggatcaaagcaagattgaagagtttgagcagctg
caggcagccaagccagactctcggagggtggagcggcccccagccaacctgtggaagaaa
aaggagcattcgagggagtacaggaacggtaacatgctcagggactaccagcttgagggg
gtcaactggctcctgttcaactggtacaacagacgcaactgcatcctggctgatgagatg
ggcctgggaaagaccatccagtccatcacattcctggaggagattcatcgcattggcatc
aaggcgcctttcctcatcattgcacccctctccaccatcgccaactgggaacgcgagttc
cacacgtggacccacctcaacgtcatcgtttaccacgggagcgtcgtcagtcggcagatg
ctccagcagtacgagatgtacttcagggatgctcagggtcgtgcgatacgaggtgcctac
aggttccaggctgtcatcaccacattcgagatgatcctgggcggctgccctgagctcaac
gccatcgagtggcgctgcgtcatcatcgacgaggcccaccgcctcaagaacaaaaactgc
aagcttctggaaggtttcaagctcatgaatttggagcacaaggtcttgctgacgggtacg
cctctgcagaacacagtggaggagctgttcagcctcctccactttctggagccgacgcgc
ttcccctcagaaaacaccttcatgcaggagtttggagacctgaagaccgaggagcaggtg
cagaaactgcagggcatcctgaaacccatgatgctgcgtcgtttgaaagaggatgtggag
aagaaactggctcctaaagaagaaaccatcattgaggttgaactgaccaacatccagaag
aaatactaccgcgccatcctggagaagaacttctcttttctggcgaaaggagcgggccag
gcaaacatgcccaatctggtcaacacaatgatggaactaaggaagtgttgcaaccacccc
tacctcatcaaaggagcagaagagaagattctagaggacttcagggaagtctataacccc
tctgcccccgactatcaccttcaggcaatggttcagtctgctggaaagttggtcctcatt
gataaactgctgcctaagatgaaggctgggggccacaaagtgctcattttctctcaaatg
gtgcgctgcctggacatcttagaagactacctcattcagagaaggtacttgtatgagcgg
attgatggtcgtgttcgtggaaacctgcgacaagctgctattgaccgcttcagtaagccc
gactcggaccgcttcgttttccttctctgtacaagagcgggaggcctgggaatcaacctg
actgcagccgacacctgcatcatctttgactccgactggaacccacagaacgacctgcag
gctcaggctcgctgtcatcggatcggtcagaacaaggcggtgaaggtgtaccgactgatc
accaggaattcatacgagcgggagatgtttgatcgagcaagcctcaagctgggcctggac
aaagctgtgctgcagagcatgagcggccgagataacagcctgggaggaggctccggggga
ggcgctgtgcagcagcagctgtccaagaaggagattgaggatctgttgcggcgtggcgcc
tatggggccatcatggatgaagaggacgaaggggccaaattctgtgaggaggacattgac
cagatcctccagcgtagaacaaaaactatcactatcgagtctgagggacgtgggtccact
tttgctaaggccagttttgtagcatctggaaaccgcacagacatctctctggatgaccct
aatttctgggacaagtgggctaaaaaggctgacattgatatggaaatggtcaacggcaga
aacagcttagtgatcgacacacctcgcgtcaggaagcagaccagaccgttcagcgccacc
aaggacgagttggcagaactctctgagggggaaagtgacggtgacgaaaccaagcctaaa
ctcaggcggaacgatcgcctcaacagctacgggcgcaccgagtgcttcagagtggagaag
aacttgcttgtatacggatggggtcgctggaaggatattctcaaccacggccgttttaaa
aaacagttgaccgagtgggacgtggagtccatctgcagggccctgctggcgtactgcctg
gtccattaccgcggcgatgacaaaatcaagagcttcatgtgggacctcattgccccgacc
gaggatgggcgcacaaaggagctgcagaatcacctgggcctgtcagctcccgtcccacgg
ggcaggaaggggaagaagatgaagactcagtccagctctttcgacatccacaaggcagag
tggttgaggaaacacaaccctgagcacattcttctggacgatggctacaagaaacacctg
aagcatcattgcaacaaggtgctgctcagggtcagaatgctctactacctaaaacaagag
gtgatagggagcctggcccaaaaggtgctggacggcgtggactccagtgagataaagatc
tgggttccagatccagaccattcggagctgccggctctgtggtgggacgcaattgctgac
aaatgtctgcttctcggcatcttcaagcatggttatgaaaagtacaacactattcgcgca
gacccaacactgtgcttcttagagcgcgtgggacgacccgatgagaaggcgatcgctgcc
gagcagagagccaacgatttaatggatggggatgtggatgatccggagtacaagcctgct
ccagccctgctgaaggatgacatggaggatgacgcctcctctcctggagatttagtcgtc
tctgataatgccggagatgctgcccctgtgatggaaggccagactgcctactggccctcc
ccgtccatcctgacagccagactgaggcggctgatcaccgcctcccagcgcttcaccaag
acccggcaaatcatgcacatccaccaggctcagtctcagacccaggccgtctcccagcag
cctatggttctgtccactgcgttctgcccgctgcccccgacgctcaacgacacactcaac
cccaagatggccgcaaagatcgagcgccagcaaaggtggacgaggcgcgaagaggcagat
ttctatcgagtggtttccacattcggggtggtttttgacccaagcctggggcgctttgac
tggaccaagttcagagccatggcacgactgcacaagaaaaccgacgagagccttcagaag
tacctctgcgccttcaccgccatgtgtcgacgggtgtgtcgcctgccgccaaaagaagga
gactcggccgtggatccctctctcaccatccagcctatcacggaggagcgagcttctcgc
accctgtacagagtcgagctgctccgccaagtccgggaacaagttctcagacacccgctg
ctctacgaacggctgccgctttgtcagatgagctcggatctgcccgtgtggtgggaggcc
ggcgctcacgaccgcgacctgttgatcggggctgcgaagcacggcgtgagccgcacagat
taccacatcctcagagaccccgagctcagcttcatggccgcccagcgcaactacagccaa
aataaagctgcacagcagcaggcacacttacccgccccccacctgcaccctcagtaccag
gccgccagcgcagggctgacgggctctccgatgcccccgtccgctcagaaagacgccgat
ccctgtggggttatacccaaagtggagcccgcctcagaggaggaggaagaggaagctaaa
gagaggcaagtggagaactggagtgcccccgaagtgctctcggctccctcggttctggaa
gagaagccggttttaccagtgagggacatggagaagcagatggtggccgcgcgaaccaaa
ccactcacacccaactcgtctgagaagaaacccaaaaagtccagcaagagaggccgcaag
gaggccaggcgcggctccgagtcggactcagatggctcctcttcaagctcgtcctcccgc
tcctcttcgtcttcttcctcatcttcctcctcctcgcgctccggatccagctcctcctcc
tcatcgacgtcttgctcctccggctcctcgtcttcctcctcctcctcctcgtcctcttcc
gacgacagtgaaagtgagggagaggaagagaagaagaaagtgcctgcagcagcaagtgtg
aaaggttttgatgaggacagcgtggcgtctctgagcgccgcacgtgacgaagcacaagat
gcccatctgtcggagaatggggtctccagcaattcatctcatcccttccagggaggaggg
tacatgctggctgcttcctactggcctaaggaccgagtcattatcaaccgcctcgacagc
atctgccaggcagtgctcaaaggcaagtggcccggcccacggcgggtctacgagcccggc
agcgcagtggcctccttctacaccaccaagctgctggacaatgccagcaccagcgtgagc
gaggacccctctgcctcgccacaggggtcaaaggtgaccaagcatgttgcagaaaacaag
gagttctcagtaaaactcaacgatcaggaagggggtctgaagctgaccttccagaagcaa
ggtctacctctgaagaggcctttggagcccgaagagggccaccaggcccagcagcagtac
ctggcccggcttcaggagctgcagaacgcctcggacacgggactggctgacattacaaag
cctcaaagcaacttccagacggttcctccaggtcttaccagtcagatgagactgaacgga
gctctcgacggtcagccggcggtgaagaagaggaggggcaggaagaagaacgtggagggg
atggacatgcttttcatgaacaggaatcaagtccctgctgctccccatcaggtgcctcct
ggttggggaggtatcggtcaggtgggcatgtctgcagccgccatgccaaactacagcccg
agcaccagtcaggtccctgcagacacggagagcagggttcctgttattaacctcaaagac
ggcacccggctcgctggagacgatgcgcccaagaagaaagatctggagcagtggctcagc
gagcatcctggctttgtggcagacaccggggccttcatccctggagtaaataagatgcaa
atgcagttccacttccaggacggtcggccaaaacagaaaaggcaccgctgcaggaacccc
aacaagattgatgtcaacagtctgacgggagaagaaagggtccaaattatcaacaggaga
aatgcacgcaagatcgggggagccttcgctcctcctctcaaggatttgtcccggttcctc
caggaaaacccggagtatggagtccctccggaatgggctgatgtagtcaaacagtcgggt
taccttccagagagcatgtttgatcggatcctgacaggacccattgttcccgaggaggtc
agccgacgaggtcgccggcctaagaatcctctagcaaagatggctgcctcagccccgaac
ccggctgcctccgccctgggcttgaacccggtcttggcgaacggcatgctccctggtatg
gacctcaccagtttgcaggccttccagcagaacctccagagtttacagtccctgcagctc
accgctggtctcttaggcctgccgtccgacgccggcaacctggctgcgagtaatttagct
gctatgtttcccatgatgctctctggcatggctgggatgccgaacctgctcgggatgagc
aacctgctcgggaaaccagctcaggaaggagcaggaggctctgaagagaagacaaaggga
accgatgagacgtctgcctccgaagccccctctcacacctcagacaacaaaggagaaagg
acagaggactcggacgggactccttcctccacttccagctcttcttcctctgccaccacc
acacaaagtgcttcagctgcatctgcagccaccagtcaaccactttctcttaaccctttg
ttactctccagtatgctttacccagggatgcttctcactccaggccttaaccttcctgtg
tctgccacacagcagcagagctcaaacaatgacccttccacccttccgtctgctgctgct
gctcctgcaacaccccagtcctcactgcaaggggcagagcagccacaaacgcagaaggat
caagaggaggaggacgacgaggcgccagaggagaccgtggacgaggaggacgacgaggac
gaggaggagggcggcgccgagacggaggaacagtcgggcaacgagagcgaaatgaacgag
caggaggaagacgaaggatcagaaaacgaggaggaggagcgggaggaggaggaagaggag
aacacagactacctgacggactccaataaagaaaacgagacggacgaggagaacaatgaa
gtgaccatccgcggcggcgggctgaagcacgtggcgtgcgctgaggatgaggacttcatt
caggctctggataagatgatgctggagaacctgcagcagcgcagcggcgaggcggtgaag
gtgcaccagctggacgtggccatcccgctgcagctgaagagtcagctgaagaagggcgga
tccggacagcagtgcatcatggagggagactcggagggctcagacaccatgcagttcgtc
atgctgacccgcaaagggaacaagcagcagtataagatcctgaacgttcctctgtcgtcc
cacctggcggcgaaccacttcaaccagcagcaggcggagcaggaggagcgcatgaggatg
aagaagctcacgctggacatcaacgagaggcaggagcaggaggactaccaggagatgatg
cagtccctggcccagcgtccggctcaagccaacaccaaccgggaccgccggccccgatac
cagcaccctaaaggtgctcccaacgccgacctcatcttcaagacgggaggaaggagacgc
tga
DBGET
integrated database retrieval system
