KEGG   Oryzias melastigma (Indian medaka): 112161089
Entry
112161089         CDS       T07439                                 
Symbol
katnb1
Name
(RefSeq) katanin p80 WD40 repeat-containing subunit B1
  KO
K18643  katanin p80 WD40 repeat-containing subunit B1
Organism
oml  Oryzias melastigma (Indian medaka)
Brite
KEGG Orthology (KO) [BR:oml00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04812 Cytoskeleton proteins [BR:oml04812]
    112161089 (katnb1)
Cytoskeleton proteins [BR:oml04812]
 Eukaryotic cytoskeleton proteins
  Microtubules
   Tubulin-binding proteins
    Microtubule severing proteins
     112161089 (katnb1)
SSDB
Motif
Pfam: WD40 WD40_Prp19 Katanin_con80 Beta-prop_EML_2 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_TEP1_2nd WDR55 Beta-prop_WDR90_POC16_2nd EIF3I Beta-prop_EML Beta-prop_CAF1B_HIR1 ANAPC4_WD40 WD40_MABP1-WDR62_1st WD40_MABP1-WDR62_2nd Beta-prop_WDR75_1st Beta-prop_SCAP NBCH_WD40 Beta-prop_DCAF4 Beta-prop_TEP1_C Beta-prop_IFT122_1st WDR90_beta-prop_4th Beta-prop_SPT8 Beta-prop_IFT140_1st Beta-prop_EIPR1 WD40_RFWD3 Beta-prop_HPS5 Beta-prop_RIG_2nd Beta-prop_Vps41 Beta-prop_WDR19_1st Beta-prop_RIG_1st eIF2A Beta-prop_WDR35_TULP_N PROPPIN Beta-prop_IP5PC_F RMC1_N Beta-prop_LRRK2 Beta-prop_VPS8 Beta-prop_NWD2_C Beta-prop_IFT140_2nd WD_LRWD1 Ge1_WD40 Beta-prop_NUP159_NUP214 Beta-prop_IFT122_2nd Beta-prop_WDR75_2nd VPS8_N Cytochrom_D1
Other DBs
NCBI-GeneID: 112161089
NCBI-ProteinID: XP_024151853
Ensembl: ENSOMEG00000022506
LinkDB
Position
LG3:complement(34858339..34863758)
AA seq 682 aa
MAAANSTKVYWRLQEFEAHARPVSCLALGKSSGRLLVTGGEDCRVNLWSVNKANCIMSLT
GHKTPVECVQFNTSEEQVAAGSQSGSIRVWDLEAAKILQTLMGHKASITSLGFHPFGQFL
ASSSMDTNIKLWDVRRKGYVFRFKGHAEAVRSLAFSPDGKWLASASDDCTVKLWDLSQGK
VITEFRSHSAAVNVVQFHPNEYLLASGSSDRSVRLWDLEKFSMIGSLEGDTSAVRCMCFS
PDGSCLFSGATDSLRVFGWEPDRCFDVVRVWWGRVSDLAVCNQQLIGVSHQLSSVSTFVV
DLKRVKRSGGSAPHGVAPDDQPAPVKKEPGGGALRRSYERPPTTCAAQRVKQGAESERRS
PDGERQSASEDEADEKLSSAEIHNAEDYKEIFQPKNAISRTPPRMAEPFPAPPEDDVVVA
VSRQLKDVSPFPTKLQTPALASSTPIQRVEPTVVSGVKRPAAVPPSQPPPQNQAESKPRI
VLSSRNEAIGLNVDDFLSGSSDGAALSDEEVLVQMRKGHDTMMLILSSRHRNLQTVLAVW
AREGFKDALESSVSMNDLAVVVDILNKINLQPSLWSLDACTILLPQIDKLLQSKYESYIQ
TGSTSLKLVMKHFWGLISESLKALPSVGVDITREERHRKCQQCLRHLKSVSEMVRSRAAQ
VGRLGSSFLELQLLLAPLDEVL
NT seq 2049 nt   +upstreamnt  +downstreamnt
atggctgctgcaaactccaccaaggtctactggcgtctgcaggagttcgaggcgcacgcc
cggcccgtgtcctgcctggctctggggaagagctccggccgcctgctggtcacgggcggg
gaggactgccgggtcaacctgtggagcgtcaacaaggccaactgcatcatgagcctcacg
ggtcacaaaacgccggtggagtgcgtccagttcaacacgtcggaggagcaggttgcagcc
ggttctcagtccgggtccatccgggtctgggacctggaggccgccaagatcttacagact
ctgatgggacacaaagccagcatcaccagtctgggcttccatccgttcggacagtttctg
gcctccagctccatggacaccaacatcaagctgtgggacgtccggcggaaaggttacgtg
ttccggtttaagggtcacgccgaggcggtccggagtctggccttcagcccggacgggaag
tggctggcttcggcgagcgacgactgcaccgtgaagctgtgggacctgtctcaggggaag
gtcatcactgagttcagatctcactctgccgccgtcaacgtggttcagtttcaccccaac
gagtacctgctggcctctggcagctcagacaggagcgtccggctgtgggacctggagaag
ttctccatgatcggctcgctggaaggagacacgtcggccgtcaggtgcatgtgcttcagt
ccggacggctcctgcctcttcagcggcgccacagactccctgcgggtcttcggctgggag
ccggaccgctgcttcgacgtggtgcgggtgtggtgggggagggtgtcggacctggccgtg
tgtaaccagcagctgatcggcgtgtctcatcagctgtccagcgtctccaccttcgtggtg
gatctgaagcgggtgaagaggagcggcggctcggcgccgcacggcgtcgccccggacgac
cagcccgccccggtgaagaaggagcccggggggggcgctctgcgccggagctacgagagg
ccccccaccacctgcgccgcgcagagggtgaagcagggggcggagtcggagaggcggagc
cctgacggagagaggcagagcgccagcgaagacgaggcggacgagaagctgtcgtcggcg
gagatccacaacgccgaggactacaaggagatcttccagccgaagaacgccatctctcgg
actccgcccaggatggcagagccgttcccggcgccgcctgaggacgacgtcgtggtggcg
gtcagccgacagctgaaggacgtctccccttttcccaccaagctgcagacgccggccttg
gcctcgtccacgcccatccagagggtggagcccaccgtcgtctctggcgtgaagcgtccc
gccgccgtcccgcccagccagcccccccctcagaaccaggctgagtccaaacccagaatc
gtgctgagcagcaggaacgaggccatcgggctgaacgtggacgacttcctgtccggctcc
agcgatggcgccgccctgagcgacgaggaggttctggtgcagatgaggaagggccacgac
accatgatgctgatcctcagcagccggcaccggaacctgcagaccgtcctcgccgtgtgg
gcccgggagggcttcaaggacgctctggaatcctccgtctccatgaacgatctcgccgtc
gtggtcgacatcctgaacaagatcaacctgcagccgtctctctggagtctggacgcctgc
accatcctgcttcctcagatcgacaagctgctgcagagcaaatatgagagctacatccag
accggctccacgtctctgaagctcgtcatgaaacacttctggggtctgatctcggagtct
ctgaaggccttgccgtctgtgggcgtcgacatcacgcgtgaggagcgacaccggaagtgc
cagcagtgcctccgacacctgaagagcgtgagcgagatggtgaggagccgcgccgcgcag
gtgggccgtctgggcagcagcttcctggagctgcagctgctgctggcgccgctggacgag
gttctgtga

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