KEGG   Oryzias melastigma (Indian medaka): 112161246
Entry
112161246         CDS       T07439                                 
Symbol
nudt21
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 5
  KO
K14397  cleavage and polyadenylation specificity factor subunit 5
Organism
oml  Oryzias melastigma (Indian medaka)
Pathway
oml03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:oml00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    112161246 (nudt21)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:oml03019]
    112161246 (nudt21)
Messenger RNA biogenesis [BR:oml03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Pre-mRNA cleavage factor Im (CFIm)
     112161246 (nudt21)
SSDB
Motif
Pfam: NUDIX_2
Other DBs
NCBI-GeneID: 112161246
NCBI-ProteinID: XP_024152073
Ensembl: ENSOMEG00000002368
LinkDB
Position
LG3:19025285..19028510
AA seq 229 aa
MSVVQPSRSSTGWPRRGGDQFANKYISGPAKPLTLERTINLYPLTNYTFGTKEPLYEKDG
SVAARFQRMREEFDKMGMRRTVEGVLIVHEHRLPHVLLLQLGTTFFKLPGGELNPGEDEV
EGLKRLMTEILGRQDGVKQDWVIDDCIGNWWRPNFEPPQYPYIPAHITKPKEHKKLFLVQ
LQEKALFAVPKNYKLVAAPLFELYDNAPGYGPIISSLPQLLSRFNFIYN
NT seq 690 nt   +upstreamnt  +downstreamnt
atgtcggtcgttcagcccagtcgctccagcaccggctggccgcgccgcggtggagaccag
ttcgcgaacaaatacatcagcgggcccgctaaacccctgactctggagaggaccatcaac
ctataccctctcacgaactacacgtttggtaccaaagaacctttgtatgagaaggatggg
tctgtggccgcccggttccagaggatgcgagaagagtttgacaaaatgggaatgcgcagg
acagtggagggcgttctcatcgttcatgaacacaggcttcctcatgtgttgcttctgcag
ctggggacaactttcttcaagctaccgggtggggagctgaatcccggggaggatgaagtg
gagggtttgaaacgcctgatgacagagattctcgggcgacaggacggggtgaagcaagac
tgggtgattgatgactgtattggcaactggtggcgtcccaattttgagcctccacagtac
ccctacattccagctcacatcaccaaacctaaagagcataaaaaactattcctggttcag
ctgcaggaaaaagcactgtttgccgttcctaaaaactataaactggtggcggcaccattg
tttgagctgtatgacaacgctcctggatatggacccatcatttccagtctaccacagctg
ttgagcaggttcaactttatctacaactaa

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