Oryzias melastigma (Indian medaka): 112161485
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Entry
112161485 CDS
T07439
Symbol
smarcc1b
Name
(RefSeq) SWI/SNF complex subunit SMARCC1b isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
112161485 (smarcc1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
oml03021
]
112161485 (smarcc1b)
03036 Chromosome and associated proteins [BR:
oml03036
]
112161485 (smarcc1b)
Transcription machinery [BR:
oml03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
112161485 (smarcc1b)
Chromosome and associated proteins [BR:
oml03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
112161485 (smarcc1b)
PBAF complex
112161485 (smarcc1b)
GBAF(ncBAF) complex
112161485 (smarcc1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
SWIRM-assoc_3
Myb_DNA-bind_6
Motif
Other DBs
NCBI-GeneID:
112161485
NCBI-ProteinID:
XP_024152405
Ensembl:
ENSOMEG00000015307
UniProt:
A0A3B3C9T5
LinkDB
All DBs
Position
LG11:9752243..9767162
Genome browser
AA seq
946 aa
AA seq
DB search
MSGVTNFGFSGSSQANSGAVAYRKKECSPSAWFWESPDTSAQLELVRQWIGRHYKKYVVV
DAPSCQSLAALTMQLLQFQEDAFGRNASNPTLTKLPAHCFMDLRPGGGLSHILGTAYKFK
VEQGWRRFDLQNVSRTERNVEMFAVIEKTLLQNNCMSLPVVCLDSSLDHDLASRLTGIVI
RHQGSITEDRTMASHHVCASAGPIEEDEWMRPVTQRDNHVQVHWGMHPDSYDSWLSSSDI
EGDVEELPHIQRPWRVHPGWVLDTDVFNEWMNEEDYCVNEKNIPVSLRRRIHLQGEPDPK
SAHSKKRRRSPSPFSEGKKKGKKGKRRGQQEEEPEEDLTKDMEDPTPVPNMEEVVLPKNV
NLKKDSENTPVKGGIMADLDDQEDDFPGRDDDDGRGEISRLSEGEENIVEQTHHIIIPSY
TSWFNNNSIHSIEKRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEYLSSTTCRRN
LTGDVCSLIRVHAFLEQWGLINYQVDAESRPLPMGPPPTPHFNVLADTPSGLAPLQHKPL
QVSASQHMLYFPERGREKSSDCQNFGLRTDVYARKHPKTKGANAGREWTEQETLLLLEAL
EVYRDDWNKVSEHVGSRTQDECILHFLRLPIEDPYLEDSSASLGPLAFQPVPFSQSENPV
MSTVAFLASVVDPRVASAAAKAALEEFSKVQDEFVDKGSDPSHQSEKTDVMDPENLDSNP
HQALVMVDGVKMEPGVSKLEDDQVKSENAHSEEREGFYFPEGVCDDAIRHGEGDDGGRVM
EVELVEGSVSTAAAAALSSAATKAKHLAAVEERKIKSLVALLVETQMKKLEIKLRHFEEL
ETIMDREKEALEQQRQQLLTERQTFHTEQLKQAELKVRQQREQQQGQPGYSAQNTGQSVP
NRVMPGGGNPPQTMAPRHPGAPNGMYPSSQPDGIASTQSALPPSHS
NT seq
2841 nt
NT seq
+upstream
nt +downstream
nt
atgtccggagtgacaaacttcgggttctctgggagtagtcaagcaaactccggagcagtc
gcataccggaaaaaggagtgcagcccgtcggcttggttctgggagagccccgatacttca
gctcagttggagctggtgcgacagtggatcgggaggcactacaaaaagtatgtggtggtg
gatgccccatcttgccagtctctggctgcactcaccatgcagcttctccaatttcaagag
gatgcctttggcagaaatgcttccaatccaacactcacaaaacttcctgcacattgtttc
atggacttgcgaccaggtggtggacttagtcacatccttggcactgcttacaagttcaaa
gttgaacagggctggcgaaggtttgacctgcagaatgtatcaagaacagagagaaatgta
gagatgtttgctgtgattgaaaagactcttctgcagaacaactgcatgtctctgccggtg
gtgtgtctggactcttctctggaccatgacctggctagcagactaactgggattgtcatc
aggcatcagggttcaatcacagaggacagaacgatggccagtcaccatgtctgtgcatca
gctggtccaatagaagaagacgaatggatgcgtcctgttacgcaaagagacaatcacgtc
caagttcactggggcatgcatcctgacagctatgacagctggctgtcctcaagtgacatt
gaaggagacgttgaggagctgcctcacatccaaaggccttggagggttcaccctggttgg
gttctggatacagacgtcttcaatgagtggatgaatgaggaagactattgtgtaaatgaa
aagaacatacctgtcagtctgcgccggaggattcatcttcaaggagaaccggatccaaag
tctgctcattccaagaagagaagacgctccccatcgcctttttctgaaggcaagaagaaa
ggaaagaaggggaaaagacgtggacaacaggaagaagagccggaggaggatctgaccaaa
gatatggaggacccgaccccagtgcctaacatggaggaggttgtattaccaaaaaatgtg
aacttaaagaaagacagtgagaatactccagtgaaaggagggatcatggccgaccttgat
gatcaagaagatgactttcctggaagggacgatgacgacggaagaggcgagatctcacgt
ttgtcagagggagaggaaaacattgtggaacaaacgcatcatattataatacctagttat
acgtcatggttcaacaacaacagcatccactcaatagagaaacgagctttgcctgaattc
ttcaatgggaaaaacaaatccaaaactcctgaaatctacctggcgtatcggaacttcatg
atcgacacgtaccgcctaaaccctcaggagtacctcagctcgacgacctgcagacgtaac
ctgacaggagatgtctgctcgctcatcagggttcatgcctttttggagcagtggggttta
atcaactaccaagtggatgcagaaagtcggccccttccaatgggacctcctcccactcct
catttcaacgtgttagccgacacgccgtctgggcttgctcctcttcaacacaaaccctta
caggtgtctgcttcacagcacatgctgtattttccagagaggggcagagagaaatcttca
gactgtcagaactttgggttacgcactgatgtctacgccagaaaacatccaaagactaaa
ggagcaaacgcaggaagagaatggacagagcaagaaacacttctgctattggaggctcta
gaggtttacagggacgactggaacaaagtatcggagcacgttggttccagaactcaggat
gaatgtatccttcacttcctccgcctgccgatagaagacccttacctggaggactcctcg
gcctcgctgggcccgctggcgtttcagccggtgcctttcagccaatcggaaaaccctgtg
atgagcacagtggcctttctggcatctgtggtagatccacgagtggcatctgctgcagcc
aaagctgcacttgaggagttttccaaagtgcaggatgagtttgtggataaaggttctgac
ccgtcccaccagtctgagaaaacagatgtgatggaccctgaaaatctggactccaacccc
catcaggcactcgtgatggttgatggggtcaagatggaacctggcgtttctaaactggag
gacgaccaggtcaaaagtgaaaatgcacactctgaagagagagaaggattttattttcca
gaaggggtttgtgacgacgccataagacacggcgagggagatgacggggggagagtaatg
gaagtggagttggtggaaggcagcgtttccacggcagcggcagcagcactgtcttcagct
gcaacgaaagcaaagcacttagcagctgtagaagaacgtaagatcaagtcccttgtggct
ctgctggtggagacacagatgaagaagctggagatcaagttgagacattttgaagaactg
gagactattatggacagagagaaagaggcactagaacagcagcgacagcagcttctgaca
gaaagacagactttccacactgagcagctaaagcaggcagagctgaaagttcgccagcag
agggagcagcagcagggacagcctggatactctgcgcagaacactggtcagtctgtaccc
aaccgcgtgatgccagggggaggaaacccccctcagacaatggctccccgacatccagga
gctcccaacggcatgtatccgtcctcacagcctgatggaatagcgtcgactcagtctgct
cttccaccgagtcacagctaa
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integrated database retrieval system
