Oryzias melastigma (Indian medaka): 112161498
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Entry
112161498 CDS
T07439
Symbol
msh6
Name
(RefSeq) DNA mismatch repair protein Msh6 isoform X1
KO
K08737
DNA mismatch repair protein MSH6
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
112161498 (msh6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
oml03400
]
112161498 (msh6)
DNA repair and recombination proteins [BR:
oml03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
112161498 (msh6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
PWWP
MutS_IV
MutS_II
MUM1-like_PWWP
Motif
Other DBs
NCBI-GeneID:
112161498
NCBI-ProteinID:
XP_024152423
Ensembl:
ENSOMEG00000001336
UniProt:
A0A3B3B5J2
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All DBs
Position
LG15:complement(25457634..25465510)
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AA seq
1380 aa
AA seq
DB search
MSKQSSIFSFFTKSPPLVSKPKPSSSPAEADLPSAVKKSNSSPKEEANETQQQQLANAGK
VKRKSNSKSASGGIKKLFGSKTPTVEDSSSFSFKAGALVWAKLEGHPWWPCMVIPQPLTG
QLLRGRGRDQRVHVHFFDEPPTRGWVSTKYIREYQGSDCSDVKPGGVFFSSKPVIRQAMK
LADGVLFESPEERVKMPLCMDPSDEEEEEDMELDQPTLTDEELSDEDEKKNDKTNPSKVS
RRSSRSSVEKGIKSKRRRIIVASDSDESDEEFKPEKHAASSSEEEEEEEGAASTEEEEES
TQESEVESPVKPVKRKRPAEKSTSSKAKAPATFTATPKRAPAAIAADTKSRLTAFSAPDS
FESQANGSASAGAATVWDHEKLEWLQEGKKKDGKRRRQTDEDYDPTSLYVPEDFLNRNTP
GMRRWWQLKSEMFDTVIFYKVGKFYELYHMDAVVGVNEMGLTFMKGTWAHSGFPEIGFGR
FSDVLVHKGYKVARVEQTETPEMMEARCKVMAKPSKFDRVVRREVCRIITRGTQTYSVLD
GAPSESQSKFLLSLKEKAEEESSGRCRTYGVCFVDTSVGYFHVGQFPDDRHCSRLRTLIA
HFAPAEVLFEKGNPSVETRKILKASLSSALQEGLQGGSQFWDAQKTLKTLSEEDYFKESA
GEEPQTGSSFLPALLKKMTSESDSLCLSPKEGYELALSALGGCIFYLKKCLVDKELLSMA
NFEEYVPVDVELAKAAGPSSFFAQTRLRMVLDGVTLANLEIFQNGSGGTEGTLLERLDTC
STPFGKRLLKQWLCAPLCNPTAIKDRLDALEDLMEAQAQASEASELLKKLPDLERLLSKI
HSIGTPLKGKDHPDSRAVLYEEVTYSKRKIADFLSALEGFKTMQEIVSAFAQVSAKFGSK
LLRQVVSLKTEEDGLFPDLSVELKRWDTAFDHQKARSTGVITPKTGFDPEFDQALTGIKS
CERELNDYLERQKKRLGCKSMAFWGTGKNRFQMEVPDSVSERNIPDEYEVKSTKKGCKRY
VTKETERLFSQLQGQEEKRDAALKDCMRRLFYNFDKNYQDWKTSVECMAVLDVLLALMRY
SQGGDGPMTRPEVELPEDGDQAVPFINLVGSRHPCVTKTFFGDDFIPNDIFIGCSENGEG
LEENGCASCVLVTGPNMGGKSTLMRQCGLVVILAQLGCYVPAESFRFTPVDRIFTRLGAS
DRIMAGESTFFVELSETASILHHATKHSLVLLDELGRGTATYDGTAIASAVVKELAEKIC
CRTLFSTHYHSLVEDYSKNAAVRLGHMACMVENECEDPSQETITFLYKFIGGACPKSYGF
NAARLANLPEEVIQSGHKKAREFEKSTVSLRLFKKLCQFAEDPTLDRTRLLAVTQLIHTL
NT seq
4143 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaagcagagctccattttcagctttttcaccaagtctccgccgctggtctccaag
ccgaaaccaagctcctctccagccgaggccgacttgccttctgcagtgaaaaagtctaac
tcctctccgaaggaggaagctaatgaaacccagcaacagcagctagctaacgctggaaaa
gtgaaacggaaaagtaactcaaagtctgcgagtggagggataaaaaaactgttcgggagc
aaaactccgaccgtcgaagacagcagctcattttcattcaaagctggtgccctagtttgg
gccaaattggaagggcacccctggtggccgtgtatggtaataccccaacccctgactggg
cagcttttgagggggcgtggtcgggaccagcgggtacatgttcatttcttcgatgagccc
cccaccagaggatgggtcagcaccaaatacatccgggagtaccaaggctctgactgcagc
gatgtcaaacccggaggggtcttcttcagtagcaaacctgtcatccgccaggccatgaag
ctcgctgatggggttttgtttgagagcccagaagaaagagtgaagatgcctctctgcatg
gatccatctgatgaggaggaagaggaggacatggagctcgaccagccaacactgactgat
gaagaactcagtgacgaggatgaaaagaaaaacgacaaaaccaacccatcgaaagttagt
cgccgctcctctcgcagttcagtagaaaagggaatcaaatccaagcggcgtcgcatcata
gtagcttctgacagcgatgaatccgatgaagagttcaaaccggagaagcatgctgcttct
agcagtgaagaagaggaggaggaagaaggggcagcgagcactgaagaagaggaggaaagt
actcaggagtcagaagtagaaagccctgtcaagcctgtgaaacgcaaacgtcctgctgag
aaatcgacgagttcaaaagcgaaagctcccgccacctttacggccactcccaaacgcgcc
ccggcagcaatcgccgcggacacaaagtctcgtctgacggcgttctctgctcctgacagc
ttcgagagtcaggccaacggatcggcttccgcaggagctgcaaccgtttgggatcacgaa
aagcttgagtggctgcaggaaggcaagaagaaagacgggaaacggcgacgacaaacggat
gaggactacgaccccaccagcctgtacgtgccagaagacttcctcaacagaaacactcct
gggatgcgccgctggtggcagctgaagtctgagatgtttgacacagttatcttctacaag
gttgggaagttttatgagctctaccacatggatgctgtggtcggagtcaatgagatggga
ctgacgttcatgaagggcacctgggcacactccggctttccagagatcggctttggccgc
ttctccgacgttttggtccacaaaggttataaggtcgctcgggtggagcagacagagact
ccagaaatgatggaagcgcgctgcaaggtcatggccaaaccctccaagtttgaccgcgtg
gtgaggcgggaagtgtgccggatcatcacgcgaggaacccaaacctacagcgtgttggat
ggagctccttctgagagccagagcaagttcctcctgagtttaaaagaaaaggcagaagag
gagagctctggccgctgccgcacctacggcgtctgctttgtggacacctctgtgggttat
ttccacgtcggtcagtttccagacgaccgtcactgctcacgtctgcgcacgctgatcgca
cactttgcccccgccgaggtgttattcgaaaagggaaacccgtcagtggagacgcgcaaa
attctcaaggcgtccctgtcctcggctctgcaggaggggcttcagggcgggagccagttt
tgggacgctcagaagacactgaaaactctctcagaggaggattattttaaggagtcggct
ggagaggagccgcagaccgggagcagctttctcccagctcttctgaagaagatgacttct
gagagcgactctctgtgtttgtctcctaaagaggggtatgagctggcgctgtctgctctg
ggtgggtgcatcttctacctgaagaagtgtctggtggataaagagctgctctccatggcc
aactttgaagaatatgttcctgttgatgttgagctggccaaagctgccggaccctccagc
ttctttgcccagactcgtttgcgtatggtactcgacggagtaactctagcaaacttggag
atttttcagaatggatctgggggaaccgagggaaccctgctggagcgcctggacacctgc
tccaccccattcggcaagaggcttctgaagcagtggctctgcgctcccctgtgcaatccc
accgccatcaaggacaggctggacgctctggaggacctcatggaagctcaagctcaagca
tccgaggcttctgagctgctgaagaagcttccggatctagagcgtcttctgagtaagatc
cacagcatcggcactcccctgaagggcaaggaccaccccgacagcagagccgttctctac
gaggaggtcacctacagcaaacgcaagattgcagacttcctgtcggcgctggaaggtttc
aaaacaatgcaggaaatcgtctccgccttcgctcaagtttctgccaagtttggatccaag
ttgctgcgtcaggttgtcagtttgaaaacagaagaggacggactctttccggatctctca
gttgaactgaagcgctgggacacggcttttgaccaccagaaggctcgttccaccggcgtc
atcaccccaaaaaccggctttgacccggagtttgaccaggccctgaccgggatcaagagc
tgtgagcgggagctgaacgattacctggagaggcagaagaaaagactgggctgtaaaagc
atggccttctggggaactgggaaaaaccgcttccagatggaggttcccgacagcgtctcg
gagaggaacattccagatgagtacgaggtgaagtcgacaaagaaaggctgcaagcgctat
gtgacgaaggaaacggagcggcttttctcccagctgcaaggacaggaggagaagagagat
gccgctctgaaagactgcatgaggagactgttctacaactttgacaagaactatcaagac
tggaagaccagtgtggagtgtatggccgtgctggatgttttactggccttgatgcgctac
agtcagggtggagacggccccatgacgaggcctgaggtggagctcccagaggatggcgac
caggctgtccccttcatcaaccttgttggatcgcgtcacccctgcgtcaccaaaaccttc
tttggcgacgatttcatccccaatgacatcttcatcggttgctccgaaaacggtgaaggt
ttggaggagaatggctgtgcttcctgtgtgctcgtcaccggaccaaatatgggcgggaag
tctactctaatgcgacagtgtggtcttgtggtcattttagcccagctgggatgctacgtt
cctgccgagagcttccggttcacaccggttgaccggatcttcacccggctgggagcttca
gatcgtatcatggctggagagagtaccttctttgtggagctcagcgagacggccagcatc
ctccatcatgccaccaaacactcactggtgctcctcgatgaattagggaggggcactgcc
acatacgacggcacagccatcgccagcgctgtggtgaaggagctggctgagaagatctgc
tgtcgcacgctcttctctacccattaccactcgctggtggaggattactctaagaacgcc
gctgtgcgtttaggacacatggcatgcatggtggaaaacgaatgcgaggatccaagtcaa
gagaccatcactttcctctacaagttcatcggtggcgcatgtccaaaaagttacgggttc
aacgccgctcgactcgccaacctccccgaggaagtcatccagtctggacacaagaaggcc
cgagaatttgagaagagcaccgtcagcctccgattgttcaagaagctatgccagtttgct
gaagatcctacactggaccgcacccgtttacttgctgtcactcagctgatccacacctta
tag
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integrated database retrieval system
