Oryzias melastigma (Indian medaka): 112161501
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Entry
112161501 CDS
T07439
Name
(RefSeq) VPS10 domain-containing receptor SorCS1 isoform X1
KO
K27081
VPS10 domain-containing receptor SorCS1
Organism
oml
Oryzias melastigma (Indian medaka)
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
oml04131
]
112161501
Membrane trafficking [BR:
oml04131
]
Protein recycling
Others
Others
112161501
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sortilin-Vps10
Sortilin_C
PKD
PKD_4
GBP_PSP
Osmo_MPGsynth
Motif
Other DBs
NCBI-GeneID:
112161501
NCBI-ProteinID:
XP_024152428
Ensembl:
ENSOMEG00000007448
LinkDB
All DBs
Position
LG15:6864352..6956767
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AA seq
1238 aa
AA seq
DB search
METRLGQWGVLPFPGWIWLLITTSLLGGTNAEVRCIPSCQLPLNSATYWEPNELDLADFG
AAEDLVGISGGSVDAGGDERRNAVELSAEEESSFNVQPQIEEAFTNGAQRDDLKAHPKLS
QLSGSALREPDLPLNNTNDSSDSDDIFYGIYAQTEDVPTMENRDETTWRRLRRARSAETW
SGFRAEGVDDAPALDQEEFELPSSIFALSGDTAHNQAMVHWSGENSSVILMLTKYFDFNS
GRVTESSLWRSTDYGTTYENLNEKVGSKTILSYLYVSPNNKRKIMLLTDPEVESSLLISL
DEGATYQKHGLTFDILSLLFHPEQEDWILAYSHDQKLYVSVEFGRRWQFVHDDVVPNRFY
WSRLGLDKEQGLIHLEIQVSDGRSQYVTCKLQNCSDGNKGKPFPGFIIPNSLVVQDEYVF
IQVSVGGQSVHYVSYKRNAFYPMKLPKYTLPKDLQIISTDDNQVVAAIQDWHQNDSYNLY
MSESRGLFFMLMLEDVVSSGGPEDNVMIELYEVAGIKGVFLSNKVVENQVKTYITYNKGR
DWRLLQAPATDLQGNKVYCEQPYCSLHLHLHVSENPYASGNIVSKDSAPGVIIASGVVGP
ELISTNVSIFITSDAGNTWKEVFQEEYSVFFLNQGGALVAIRHTPLPIRHIWLSFDEGRN
WDKYSFTSSPLYVDGVLGEPGEDILIMTIFGHFSHRAEWQLVKIDFRSIFKRRCGSEDYI
TWQLHNQGEVCIMGMKRFFQKLRENVQCVKARDQYISQTSDSCPCTEADFECDYGFERQV
DGRCTPAFWFVPSATSPDCTTGDTFLNTTGYRKALSNKCSGASLLKYSPRQEKCPSQAPK
GLQLFTSEGTLVATLGRNVTFLVFLEEGLGSMTSITVDFGDGTAISYVNISSIDDGVKHI
YSKVGIYQVSATASNNLGSDRVILYLHVTCQLEQVELTAPLVVVKNRAVNFTTVLHPATV
GTVTYFWWFDNKTEPIVTLDGAVSFAFSNEGHHSVTVQALAGNTVHQDQRMVAVYDYFQS
HVLAFSSNLDDLNPGVSEWREDVSRVVKSRIVQVTGISENQLLVAVLPGVPTTAEIFIVS
ERASAERPLNEKWVHLSQLSQVLLSALNQDLIQFTLKPGVQVNVYATWLSPAPLVDSGDS
VHSGIAVIMLVSVVLAILAVFLVYKFKRKFPGMNTYAAEQPDKEQEVIPAVTSLAVPDPE
EDKMTSLVHVDVQLDSKSRGYLPSHTDIKLSDEAPHVF
NT seq
3717 nt
NT seq
+upstream
nt +downstream
nt
atggagacgcgtctcggccagtggggggttctccctttccccgggtggatttggctcttg
atcacaacttcccttctgggtggaacaaacgcggaggtgaggtgcatcccctcgtgtcag
ctgccgctgaactcggcaacgtactgggaaccgaacgagttggatttggcggattttggc
gcagctgaagatctggttgggattagcggggggtcagtggacgccggcggggacgaaagg
cgcaacgcagtggaattaagtgctgaagaagaaagttcattcaacgttcaaccacaaatt
gaggaagcatttacaaacggtgcgcagagggacgacttaaaagctcatccaaaactttcc
cagctttctggaagtgctttacgcgaacctgacctccctttgaataacacgaacgacagc
agcgacagtgatgacatattctatggcatttatgcccaaactgaggatgtcccgacgatg
gagaacagagatgagaccacatggagacgactgcggcgcgccaggagcgcggagacttgg
tctggattcagagctgagggcgtggacgacgcaccagctctggatcaggaggagtttgag
ctcccaagttcgatatttgctctcagcggagacacagctcacaaccaggcgatggtgcac
tggtccggggaaaacagcagcgtgattctcatgttgacaaaatacttcgacttcaactct
ggcagagtgacagagagctctttgtggaggtcaactgattatgggaccacatatgaaaac
cttaatgagaaagtcgggagtaaaaccattctgagctacttgtacgtgagtccaaacaac
aaaaggaagataatgttactgactgacccagaggtagagagcagcctgctcattagcctc
gacgagggggcgacctatcagaaacacggcctaacctttgatatcctcagcctgcttttt
caccccgagcaggaggactggatcttggcttacagccacgaccaaaagctttatgtgtcc
gttgagtttgggaggagatggcagtttgtccacgatgacgtcgtccccaacagattctac
tggtccagactgggtttggacaaagagcaaggactgattcatctggagatccaagtttct
gatggacggtcacagtatgtaacttgcaaactccagaactgctctgatggaaacaagggc
aagcctttccctggatttatcatcccgaactccctcgtagttcaggatgaatacgttttc
atccaggtatcagtaggtggccagtcagtccattatgtgtcgtataaaagaaatgctttc
tacccaatgaagctccctaaatacactcttcccaaggatctgcagataatcagcacggac
gataaccaagtggtggcggcgattcaggactggcatcagaacgattcctacaacctgtac
atgtcggagtcccgagggctgttcttcatgctgatgctggaggacgtggtgagcagtgga
ggacccgaggacaatgtcatgatagaactctatgaggttgctgggattaaaggggtgttc
ctgtcaaataaagttgttgagaaccaagtgaaaacttatatcacatacaacaaggggaga
gactggcgtcttcttcaggctccagcaaccgatctccaaggaaacaaggtctattgtgaa
caaccgtactgttcgctgcatctgcaccttcatgtttcggagaacccgtacgcctcggga
aatattgtcagtaaagattcagctccaggagttataatagcgtcaggtgtggttggacct
gagctgatcagtaccaacgtcagcattttcattacatctgatgctggaaacacctggaaa
gaggttttccaggaggagtatagtgtgtttttcctgaatcaagggggggctctggtggcc
atcagacacacaccgctgccaattagacacatttggctgagttttgacgagggcagaaac
tgggacaagtatagcttcacctcttctcccctgtatgtcgatggggtgcttggagagcct
ggagaagacatcctcattatgacaatatttggtcatttcagtcacagagctgagtggcag
cttgtcaaaatcgactttcgctccattttcaagcgtcggtgcggatccgaagactacatc
acatggcagttacacaaccagggggaagtgtgcatcatgggaatgaagagattctttcaa
aaactgagagagaacgttcaatgtgtcaaggccagagatcaatatatttcccagacgtcc
gactcctgtccgtgcacagaagcggattttgagtgcgactacgggtttgagaggcaggtg
gatgggagatgcactccggctttctggtttgttccttcagcaacatctccagattgcaca
acgggggacaccttcctcaatacgacgggataccgaaaagctttgtccaacaagtgctca
ggagcgagtcttttaaagtacagccccaggcaggagaagtgtcccagtcaggcccccaaa
ggtctgcagctcttcaccagcgaaggaacgcttgtagcaactctggggaggaacgtgacc
ttcctagtctttctagaagagggtctcggctccatgacgagcataacggtggactttggt
gacggaacggcgatatcgtacgtgaatataagctccatcgatgatggggtcaagcacatc
tacagtaaagtgggcatttaccaagtttcagccacagcgagcaataacctcggttcggat
agagtcatcctttacctccatgtgacctgtcagctggagcaggtggagctcacggctcct
ctggtggttgtcaagaacagagccgtaaatttcacgaccgtgttgcatccagccaccgtg
ggaacggtcacatatttctggtggtttgacaacaaaactgagccgattgtgaccctcgat
ggagcagtttccttcgctttttccaatgaaggccatcacagcgtcaccgttcaggcttta
gccggaaataccgtccaccaggaccaaagaatggtggcagtttatgattattttcagtca
cacgttttggctttttcttctaatctggatgatctgaacccgggggtgtctgagtggaga
gaggacgtcagcagggttgtgaagagccgcatagtccaggtcacgggaatcagtgagaat
caactcttggtggcagtccttccaggcgtaccgacgacggcggagatttttatcgtgtct
gagagggcgtcggcggagaggccgctgaatgagaagtgggtgcacctgagtcagctttct
caggttctgctgagtgctctgaaccaagacctgatccagttcacgctcaaaccgggggtg
caggttaatgtctacgccacctggctgtctccagctcctcttgtggacagtggtgacagc
gtgcacagtgggattgcagtcatcatgcttgtgtcggtggtcctggcaatcctggcggtc
tttttggtatataaatttaaaaggaagtttccaggcatgaacacatacgccgcagagcag
ccggataaagagcaagaggtgatccccgcagtgacctccttagcagttccagaccccgag
gaggacaaaatgacctccctggttcatgtggatgtgcagctggactctaaaagcagaggc
tacctgccatctcacacagacatcaagctctctgacgaggcgccccatgtgttttaa
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