Oryzias melastigma (Indian medaka): 112161753
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Entry
112161753 CDS
T07439
Symbol
rxrba
Name
(RefSeq) retinoic acid receptor RXR-beta-A isoform X1
KO
K08525
retinoid X receptor beta
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml03320
PPAR signaling pathway
oml04920
Adipocytokine signaling pathway
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09150 Organismal Systems
09152 Endocrine system
04920 Adipocytokine signaling pathway
112161753 (rxrba)
03320 PPAR signaling pathway
112161753 (rxrba)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
oml03000
]
112161753 (rxrba)
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
oml03310
]
112161753 (rxrba)
Transcription factors [BR:
oml03000
]
Eukaryotic type
Zinc finger
Cys4 hepatocyte nuclear factor 4-like
112161753 (rxrba)
Nuclear receptors [BR:
oml03310
]
2. Hepatocyte nuclear factor 4 like
2B. Retinoid X receptor (RXR)
112161753 (rxrba)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hormone_recep
zf-C4
Nuc_recep-AF1
tRNA_bind_3
Motif
Other DBs
NCBI-GeneID:
112161753
NCBI-ProteinID:
XP_024152945
Ensembl:
ENSOMEG00000016683
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Position
LG11:12664384..12690143
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AA seq
525 aa
AA seq
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MDERRGCLSHIAAFGFPNQLRPGPQSAVSSLIAGRKGRKNVSSTLSDNPCVPTTIMGDSR
DSRSPDSSSVSSPPSGQRSPPLGSSAAASMTSLPPITSSGVNSPVSSIGSPFSVISSSLG
SPCLPGTPSVGYGPISSPQINSTVSMSGLHAVSSSDDVKPPLGLKQLSSHSPGPMLSQKR
LCSICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCIVDKRQRNRCQYCRYQ
KCLAMGMKREVAKMNDRSVQEERQRNKEREGEVESTSAVNEEMPVEKILEAEMAVEQKTE
LHSDGSSGGSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELL
IASFSHRSISVKDGILLATGLHVHRNSAHSAGVGAIFDRAHNAEVGAIFERVLTELVSKM
RDMQMDKTELGCLRAIILFNPDAKGLSNSSEVELLRERVYASLEAYCKHKYPDQQGRFAK
LLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAPHQLT
NT seq
1578 nt
NT seq
+upstream
nt +downstream
nt
atggatgagaggcggggatgcctgtcgcacatagccgcctttggtttccccaaccaactc
cggcccgggcctcagtccgcggtctcgagtttgatagcgggccggaaaggaagaaagaac
gtcagctcaacgctttcagacaacccctgtgtcccaaccaccatcatgggagacagtaga
gattctcgcagcccagacagttcgtctgtgtcttcccctccctctggacagcgatcacct
ccacttggttcatcagcagcagcttccatgacctcccttccacccatcaccagcagtggt
gtcaacagccccgtcagcagcatcggctcccccttttcagttattagctcatcactgggc
tcgccctgccttcctggcaccccttcagttggttatggcccaattagcagtccccagatc
aactccactgtgtccatgtcaggacttcatgcagtaagcagctcagatgatgtgaaacct
ccactgggcctaaagcagctgtcatctcacagcccagggccaatgctctcccagaaacgg
ctttgttccatctgtggagatagatcctctggtaaacactatggtgtttacagttgtgag
ggatgcaaaggcttcttcaaacgaacagtacgaaaagatctgacctacacatgccgggac
aacaaagactgcattgtggataagagacagaggaaccgctgccaatactgccgctatcag
aagtgcttagccatgggcatgaagagagaagtggccaagatgaacgacagatctgtccaa
gaagaaaggcaaagaaataaggagcgtgagggcgaggtcgagtccaccagtgcagtgaac
gaggaaatgccagtagagaagattttggaagcggaaatggctgtagagcaaaagacagag
ctccattcagatggaagttcaggcggcagctctcccaacgatcctgtcaccaacatttgc
caagctgcagacaagcagctcttcaccctggtggagtgggccaagagaattccccacttc
tctgagctgcctctggatgatcaagtgatcttactgcgtgcagggtggaatgaactcctg
attgcatccttctcccatcgctccatctctgtaaaggacgggattctgttggccactggc
ttgcatgtccataggaacagtgcccatagtgctggtgttggagccatttttgacagggcg
cacaatgctgaggttggggccatatttgaaagggttttgacagagctcgtaagcaaaatg
agagacatgcaaatggacaagacagagctgggctgccttcgtgcaatcatcctcttcaat
ccagatgccaagggtttgtccaactcgagtgaagtggagcttctgagagaaagggtgtac
gcgtctcttgaggcttactgcaaacacaaatacccggatcagcagggcaggtttgcaaag
ctcctgctgcgtctcccagccctgcgctccattgggctcaagtgtctggagcatttgttc
ttttttaaactgattggtgacacgcccattgacaccttcctgatggagatgctcgaagcc
cctcaccagctaacttaa
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