Oryzias melastigma (Indian medaka): 112161893
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Entry
112161893 CDS
T07439
Symbol
srfb
Name
(RefSeq) serum response factor b isoform X1
KO
K04378
serum response factor
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml04010
MAPK signaling pathway
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
112161893 (srfb)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
oml03000
]
112161893 (srfb)
Transcription factors [BR:
oml03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
MADS-box responders to external signals
112161893 (srfb)
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
SRF-TF
Motif
Other DBs
NCBI-GeneID:
112161893
NCBI-ProteinID:
XP_024153198
Ensembl:
ENSOMEG00000018350
LinkDB
All DBs
Position
LG15:28291142..28311130
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AA seq
588 aa
AA seq
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MLPSQAGSVPSGNGSASGKGTTGHGSGVVGGGIRPVLVRPGLSDGSGAAGRHGDAVGMLG
ANGPGGSRGARPGNGTGVNPLQAGVPGHMVGLNAGVVMPMGARFDPERVCSGSDNDSESG
DDDDPVGSLGDTRRGVKRERGEMEAVAAGQEMGVTPGDYGMVSGGVAGAKPGKKTRGRVK
IKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPM
ITSETGKALIQTCLNSPDSPPRSDPSMDQRMSATGFEETDLTYQVSESESMGDSKEALKP
TFTVANIPGTTSSAPSTVPTTSTTMQVSSGPSFPITNYMAPASASSNVSANGTVLKTAPA
GVMQLPSGFTFMPAGTPLPPGTPTIPLSQLQQHSLALQGQHGQALAAAQPPQQGQQAVFR
FPAAVSLTGPGIPQQLQAIQVHPNTQPTSNSDSSPDISHTSTNSTTTVSLPATIVTSSVP
TSVAGHMMYPSPHTVMYASTPALADGGLAVLNAFSQGTSAMQVSHAQAQDTGAVSQVFLT
APPGTVQIPVSAVQLHPMVIGQQTSGGSSNLTELQVVNLDAAQSSKSD
NT seq
1767 nt
NT seq
+upstream
nt +downstream
nt
atgttacccagccaggctggatcggtaccatctggaaacgggtcagcatccggcaagggc
accacaggtcacggttcgggggttgtcggcggcgggattcgtcccgtcttggtccgaccg
gggctcagcgacggctcgggtgcagcggggcgacacggggacgcggtcgggatgctcgga
gccaacggtcccggcggttcgaggggcgcgaggccgggaaacggaaccggtgtgaaccct
ctgcaggctggcgtcccgggacacatggtggggctgaacgcgggcgtcgtgatgcccatg
ggggcccggttcgacccggagcgggtgtgcagcggctccgacaacgactccgagtccggg
gacgacgacgacccggtggggtcactcggggacaccaggagaggggtgaagcgggagagg
ggggagatggaggctgtggcggcggggcaggagatgggagttacccccggagattacggc
atggtgtccgggggagtcgccggggcgaaacccgggaagaagacccgagggcgcgtgaag
attaagatggaattcatagacaacaagctgaggaggtacaccaccttcagcaaaaggaag
acgggcatcatgaagaaggcgtatgaactttccaccctcacaggaacccaggttctgctg
ctggtggccagtgaaacgggtcacgtctacaccttcgccacccgaaagctccagcccatg
attaccagcgaaacgggcaaggccttgatccagacatgcctgaactcgccggactcgccg
ccccgctccgacccctccatggaccagcgcatgagcgccacaggctttgaggagacggat
cttacctaccaagtgtcagagtcggagagcatgggagactcaaaggaagccctgaagccc
acgttcacggtggccaacataccgggcaccaccagcagcgcgccctccaccgtgcccacc
acctccaccaccatgcaggtgagcagcggcccgtccttccccatcaccaactacatggcg
ccggcgtcggccagcagcaacgtcagtgcaaatgggaccgtcctgaaaaccgcccctgca
ggagtcatgcagctgcccagcggcttcaccttcatgcctgccggcactcctctccccccc
ggcacccccaccattcctctgagccagttgcagcagcactccctggcgctccaggggcag
catggccaggcgctggccgccgcccaaccgccgcagcagggacagcaggctgtcttccgc
ttccctgctgctgtctccctcacaggacccggcattccccagcagctccaggccatccag
gtccatcccaacacgcagcccacctccaacagcgacagcagccccgacatctcccacacc
tccaccaactccaccacaaccgtaagtctcccagcaaccatcgtcacttcgtcggtgccg
acgtctgtggcgggtcacatgatgtaccccagccctcacacagtcatgtacgcgtccacg
ccggcgctggctgacggagggctggccgtgctcaacgccttctcccagggaacctccgcc
atgcaggtgtcccatgcacaagcccaggacacgggtgctgtctctcaggtgttcctcact
gcacctccaggaacggtgcagattcccgtctcggctgtgcagctacacccaatggtgatt
gggcagcagacgagcggcggcagcagtaatttgacggagctccaggtcgtcaacctggac
gcagcgcagagctcgaagagcgactga
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