Oryzias melastigma (Indian medaka): 112162133
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Entry
112162133 CDS
T07439
Symbol
spast
Name
(RefSeq) spastin
KO
K13254
spastin [EC:
5.6.1.1
]
Organism
oml
Oryzias melastigma (Indian medaka)
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
oml04131
]
112162133 (spast)
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
oml04812
]
112162133 (spast)
Enzymes [BR:
oml01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.1 microtubule-severing ATPase
112162133 (spast)
Membrane trafficking [BR:
oml04131
]
Endoplasmic reticulum (ER) - Golgi transport
Others
Others
112162133 (spast)
Cytoskeleton proteins [BR:
oml04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Microtubule severing proteins
112162133 (spast)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
Vps4_C
AAA_lid_3
RuvB_N
AAA_22
AAA_5
TIP49
AAA_16
MIT
Mg_chelatase
AAA_14
IstB_IS21
AAA_24
NPHP3_N
nSTAND3
AAA_2
WipA_N
DUF815
AAA_33
Motif
Other DBs
NCBI-GeneID:
112162133
NCBI-ProteinID:
XP_024153568
Ensembl:
ENSOMEG00000020289
LinkDB
All DBs
Position
LG15:27172567..27176497
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AA seq
471 aa
AA seq
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MSAKVHLAKGKDSGELIKNHHKQAFEFISKALKIDEDDTGEKGEAVQWYKKGIAELERGI
AVEITVQGEQYDRAKRLQDKMVANLTMARDRLALLEKTLASRKKSSPPPPSVVSQTKPKS
TSAGGATNIKPSSTARPQSRATDLKDVSRIGKNQNGRPILKQQPKRDMKNFKNVDSKLAN
LIMNEIVDRGSSVRFDDIAGQALAKQALQEIVILPALRPELFTGLRAPARGLLLFGPPGN
GKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSVIFIDEVDSL
LCERREGEHDSSRRLKTEFLIEFDGVQSGGDDRVLVMGATNRPQELDEAVLRRFAKRIYV
SLPDEKTRFTLLKNLLGKHGNPLSTNELTHLSKLTAGFSGSDLTSLAKDAALGPIRELGP
DQVRNMSASEVRNIKKKDFEDSLKRIKPTVSPATLDMYAKWNKEFGDTASL
NT seq
1416 nt
NT seq
+upstream
nt +downstream
nt
atgtctgctaaagtgcacctagctaaggggaaagacagcggcgaactcatcaaaaaccac
cacaaacaggcgttcgagtttatttcgaaggcactgaagattgacgaagacgacacagga
gaaaagggggaggctgtgcagtggtacaagaaggggatagctgaacttgaaaggggtatt
gcggtggagataactgtccaaggagaacagtatgatcgagcaaagagacttcaagataaa
atggtcgccaatcttaccatggccagagacagactggctctgttggaaaagacactggct
tctagaaagaagagcagtccgcctccacccagtgttgtgtctcaaactaaacctaaaagt
acatcagctggaggagccacaaacatcaaaccctcttctactgctagaccccaatccaga
gccactgatttaaaggatgtttccagaataggaaaaaatcagaacggaaggcctattttg
aaacagcagccaaagagggatatgaagaacttcaagaatgtggacagcaaactggccaat
ttgatcatgaatgaaatcgttgatcggggctcttcggttcgtttcgatgatatcgcaggt
caagctctggctaaacaagctcttcaggaaattgtcatccttcccgccttaagaccagag
ctgtttactggcctgagagcgccggctcgtggtctgcttttatttggcccaccaggaaat
gggaaaaccatgctggccaaagcagtcgctgcagagtccaacgccaccttctttaacatt
agtgcggccagtttaacatcaaaatatgtaggagaaggagagaagcttgtacgagcgctt
tttgcggttgccagagagttacagccttctgtcatatttattgatgaagtggacagcttg
ctctgtgagaggagggagggcgaacacgactcctcccgccgcttaaaaaccgagttcctg
atcgagttcgatggggttcagtctgggggggatgacagggttctggtgatgggagccacc
aacaggccgcaggagctcgatgaagcagttttaagacgttttgcaaagaggatttatgtg
tctttgccagacgagaagacaagattcacgctgctcaaaaaccttctggggaaacacggg
aatccactgagcacaaatgaactcacgcacctttcaaaattgacagcaggattttcagga
agtgacctgacgtcgttagctaaggatgcagcacttggccccatcagagaattgggaccg
gaccaagtacggaacatgtctgctagcgaggtgagaaacattaagaagaaagactttgaa
gattctctgaagagaatcaaacccaccgtcagtcctgccactctggacatgtacgccaaa
tggaacaaagagtttggtgatacggcatctctataa
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