Oryzias melastigma (Indian medaka): 112162165
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Entry
112162165 CDS
T07439
Symbol
col21a1
Name
(RefSeq) collagen alpha-1(XXI) chain
KO
K16629
collagen type XXI alpha
Organism
oml
Oryzias melastigma (Indian medaka)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Collagen
VWA
VWA_2
Laminin_G_2
Laminin_G_1
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
112162165
NCBI-ProteinID:
XP_024153634
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Position
LG15:complement(23704212..23731207)
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AA seq
962 aa
AA seq
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MMDYKVSSIRNVLTCMCLMLLHMFSVAQDEDLRSCRTAPCDLVFIVDGSWSVQDVNFEIV
KGWLVNITTSFNIGQKFTQVGVVQYSDDPLLEIPLGKYSTNRDLITAMESIQYMGGNTRT
GTAIKFATDKLFGLSERGPQGVSRIAVVLTDGKSQDEVFKVAEAARNKGVILFAIGVGSE
TEESELRNIANKPSSTYVFSVKDYKAISRIIQVIRQKLCEETVCPARIPVNSREEKGFDL
LMYLNLAKKAKKTRGTFYGTNAFEVTTPVDLSEATRSLFPDGLPPSYVFVATLKYKGSVA
VEEWDLWRIQTLDGKPQMAVTLNGGARTVMFTTTSKAPTETQTVTFSKQTAMKLFDEKWH
QMKLLVTEEDVTLYVDDLEIETLPLEPSVGIFINGKTQVGKYVRKETTVPFEIQKLRIYC
DPEQNKRETACEIPGVCIDSLDYVEPTREPCACPPGPSGPPGLKGERGNAGMPGQPGPAG
ADGKPGIPGARGSPGLPGSPGIQGPRGADGYKGGQGAPGVSGERGSPGLPGRPGQPGEKG
SKGSAGMTGLPGKDGQMGEKGSAGSPGSPGFPGKPGVPGRDGNNGIPGRDGQKGETGVRG
IPGADGREGRPGLPGLPGVAGLNGQKGDIGEPGLKGFKGSSGPPGEMGLPGTPGLRGHTG
PKGNKGESASPGIKGAPGLPGSTGEPGRPGQPGHPGMPGLKGSKGQRGNPGESGEMGRKG
EQGEHGRPGLQGSPGQIGLKGEKGTTGNSGQRGPEGQIGRPGQPGQSGPPGPRGLQGDGG
PPGPPGPEGRSASGLSDNHIRQICRDVLQTELPLLLRMSNQQSGCTRCHSQPGSPGPPGP
AGPQGHRGFPGLSGPRGQPGHAGQPGHPGINGPKGEEGLKGEKGSPGRVTVGDQGPPGPP
GPTGPQGYSKPGSPGNPGPPGQSGAEGKSGSPGVPGEPGICDPSLCYGRMMRRGPYSKGP
NY
NT seq
2889 nt
NT seq
+upstream
nt +downstream
nt
atgatggattacaaagtgtcatctatacgtaatgtcttaacatgcatgtgtctcatgctt
cttcatatgtttagtgtggctcaagatgaagatttgagaagttgcaggacagcaccgtgt
gatttagtcttcattgtggacggatcatggagtgttcaagatgttaattttgaaatagtg
aaagggtggcttgtcaacataacaactagcttcaacattggacagaaatttacccaggtt
ggagtagtccagtacagcgatgacccccttttagagatacctttgggaaagtactctaca
aacagagacctcatcacagccatggagtcaattcaatatatgggaggaaacacaaggaca
gggaccgcaataaagtttgcaacagacaaactgtttgggctttctgaacgaggcccacag
ggtgtttctaggattgctgtggtcctcacagatggcaagtctcaagatgaagtcttcaaa
gtagcagaagcagcaaggaacaaaggagtaattctgttcgcgatcggcgtcggttcagaa
acagaggagtctgaactaaggaacattgccaacaagccatcgtctacgtacgttttttct
gttaaagactacaaagctatttcacggattatacaggtcatacggcaaaaactgtgtgaa
gagacagtttgtccagccagaattcctgtaaattctcgggaggaaaaaggctttgatcta
ctaatgtatttaaatttggccaaaaaggccaagaagacacgagggacgttttatggcacc
aacgcatttgaagtgacaactcccgttgacttgagtgaagcaacacgatctttgttcccc
gatggtctgcctccatcgtacgtctttgtggccaccctcaaatacaaaggatcggtagct
gtggaggagtgggatctgtggaggatacagacacttgatggtaaacctcagatggctgtg
actctgaacggtggggctcgcaccgtcatgttcaccacaaccagcaaggcacccactgag
actcaaaccgtcacattttcaaaacagacagcaatgaagctttttgatgagaaatggcac
cagatgaaactgttggtcactgaagaggatgtcactctttatgtggacgatctggaaatc
gaaaccctgccactggagccctctgttggcatttttatcaatggaaaaacccaagttgga
aaatatgttcgaaaggaaacaacagtgccatttgaaattcaaaaactgcgcatctactgt
gaccctgagcagaataaaagagagactgcttgcgaaatacctggagtttgcatcgacagt
ctggattacgtagagccaactcgagaaccctgtgcttgtcctcctggaccttctggacct
ccagggttgaagggtgaacgaggtaacgctggtatgcctggccagcctggacctgctggc
gctgatggtaagcctggtatccctggcgctagaggaagcccagggctgccaggttcacca
ggaatacagggcccacgtggagcagatggatataaaggtggacaaggggcgccaggtgtc
tcgggtgaaagaggttcaccaggattgccaggacggcccggacagccaggagagaagggc
tcaaagggatcagcaggaatgacaggattacctggaaaggatggtcaaatgggagaaaag
ggaagtgcgggatctcctggttcacccggtttccctggaaagcctggggtacccgggaga
gatggaaacaatggaattccagggagagatggtcagaagggggaaactggagtcagaggg
attcctggtgcggatggacgggaaggacgacctggattgcctgggttaccaggagttgca
ggcctgaatggacaaaagggggacattggtgaacctggactaaagggcttcaaaggatct
tctggacctcctggtgaaatgggtttacctggaacacctggtttgagaggacacactgga
ccaaagggaaataaaggtgaaagtgcaagtccaggaataaaaggagcacctggccttccg
ggaagtaccggggaaccaggaagaccaggccagccgggtcacccagggatgcctggcctc
aagggaagcaagggtcaaagagggaatccgggtgaaagtggagaaatgggaagaaaagga
gaacaaggggaacacggccgaccaggactccagggatcacctggtcaaataggactaaaa
ggggagaaagggacaacaggcaattctggacaaagaggaccagagggtcaaataggacgg
cctggacaaccaggacaatcaggtccacccgggccccggggtctacagggggatggagga
cctcctggtccacctggccctgaaggcagatctgcgagtgggctgtcagacaatcacatt
cgacaaatctgcagagatgttctccagactgagctgcctttgttgctgcggatgagcaac
cagcagagtggctgcaccagatgtcacagccagccgggttctcccggtccaccggggcca
gctgggccccagggacacaggggttttcctggactcagtggtcctagaggtcagccgggt
catgctggtcagccgggacatcctgggattaatgggcctaaaggagaagaaggtttaaaa
ggtgagaaggggagtcctggtagagtcacggttggagatcaaggaccaccgggaccacca
ggtccaactggtccccaggggtacagcaaaccggggtctccaggtaaccctgggcctccc
ggtcaaagtggagcagagggcaaaagtggcagtcctggcgttccgggtgagccggggatc
tgcgacccatccctgtgctatgggaggatgatgaggaggggtccttacagcaaaggccca
aactattga
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