Oryzias melastigma (Indian medaka): 112162277
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Entry
112162277 CDS
T07439
Symbol
hps1
Name
(RefSeq) Hermansky-Pudlak syndrome 1 protein isoform X1
KO
K20193
Hermansky-Pudlak syndrome 1 protein
Organism
oml
Oryzias melastigma (Indian medaka)
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
oml04131
]
112162277 (hps1)
Membrane trafficking [BR:
oml04131
]
Endosome - Lysosome transport
Others
BLOC-3 complex
112162277 (hps1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fuz_longin_1
Fuz_longin_3
Fuz_longin_2
Motif
Other DBs
NCBI-GeneID:
112162277
NCBI-ProteinID:
XP_024153830
Ensembl:
ENSOMEG00000003177
LinkDB
All DBs
Position
LG15:22394913..22403116
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AA seq
683 aa
AA seq
DB search
MKCLLIASESAEILFHWTDQEFQQNVQEKYRSSQEEGEGLPAFEDIISTLFAPIIISCGT
MVYRQGDSYTSFTTENNHIYVLCQFDECLYIAVNGDGEEKEDDLRRKLYVMRKITEVMFG
MVTLSGSLLRKELRPQDTEQRVRLWKHLQSLLDTYNYLRENDQSFLVEAVERLIHPTLCE
QCIEFLERRLVQQINSSSQVERAGEEVLHTFILVHTKLLAFYSSRTASTLNTSDLLTLII
MAQNMYPSNVELDEPSPEVQDAESTSGSGPESFYTPEPSPSSRDSSSSAEQPARGSTPVF
EFVDPDIQMAEDSLHTLEISPPDPSTPRRVFLELKDGQLPMVPHSMYCLPLWPGITLVLL
TKVPNIQLTRSVYSFLEDFTKLEKCLNEGQAGSGAARGQLNMHNTRSKLDKFIRDLGPNE
LQCVQLLNVWTEFKNRAFTRGGSGFNKDLIPLCKSMKTQLCSLYRQRFLTESGSADGPRC
LSPALQERAQTMVQEKLMDWKDFLLVKSKRNITMVSYLEEFPGLVHFIWVDRSSGQIIAP
SLSITERTTSELGKGPVAHYIKSKVWGLVRTTRQYLRKGYSTVTLRDGDFYFCYFLWFEN
ENGYRLEAGDIPILPDDSLPIGMLGYDYYRKLLRYYGKNHQGEAVKCYELLTVHLGVIPT
EIILQHCRQLASKLWEPSRNPLL
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atgaagtgcttgctgatagccagtgagagcgcagagatcctctttcactggaccgaccag
gaatttcagcagaatgtccaggagaagtacaggtcgtcccaggaagagggcgaggggctt
ccggcctttgaagacatcattagcactctgtttgcccccatcattatctcctgtggcacc
atggtgtacagacagggtgacagctacacctccttcaccacagaaaacaaccacatctat
gtactgtgccagttcgatgaatgtctctacattgctgtgaatggagacggcgaggagaag
gaggacgatttgaggaggaagctctatgtaatgaggaagataactgaggtgatgtttggc
atggtcaccctcagtggtagcctcctcagaaaagaactgcgtcctcaggatacagaacaa
agagtgagactgtggaaacatctgcagagtctcctagatacttacaactacctcagagag
aatgaccagagcttccttgtggaggcagtggagaggttaatccaccccacgctgtgtgag
cagtgcatcgagttcctggagcgccgtttagttcagcagatcaacagctcctctcaagtg
gagagagcaggagaggaggtgctgcacaccttcatcctggttcacaccaaactgctcgcc
ttctactccagtcgtactgcaagtacactcaacacctcagaccttctaacactcatcatt
atggcgcagaatatgtaccccagcaatgtggaactggacgaaccgagtccggaggtacag
gatgctgagagcacatcgggttctggtcctgagagcttttacacgccagagccctcccct
tccagcagagactccagcagttcagcagagcagcccgccagaggaagcactccagtgttt
gagtttgtggacccagacatccagatggcagaggacagcttgcacactctggaaatcagt
ccacccgacccctcaacccctcgtagagtctttcttgagctcaaagacgggcagttaccc
atggtgcctcactccatgtactgcctccccctatggcctggcatcacattggtgctgcta
actaaggttcccaacattcaattaacccggtcagtgtattcctttttggaagacttcacc
aaactggaaaagtgtctgaatgaaggccaagctggatctggtgcagccagaggacaactg
aacatgcacaacaccagaagcaaactggataaattcattagagacttgggtccaaatgaa
ttacagtgtgtgcagctgctgaatgtctggacagagtttaagaacagagccttcaccaga
ggaggatctgggttcaataaggacctgatccctttgtgtaagagtatgaagacccagctg
tgtagcctgtatcgtcagcgatttcttaccgagtctgggtccgctgacggtcctcgatgc
ctctcgcctgccctccaggaacgagcacagactatggtccaagaaaaactaatggattgg
aaggacttcctgttggtaaaaagcaaaaggaacattaccatggtttcatatttggaggaa
ttcccaggcctcgtccatttcatttgggtagacagatcatcggggcaaattatagctcca
tcacttagcatcacagagcggaccacgtctgagctggggaagggaccagtggctcactat
atcaaaagcaaggtgtggggcttggtcagaacaacgcggcagtatctgcggaagggttac
tccactgtcacactgcgtgacggagatttctatttctgctacttcctgtggtttgaaaac
gaaaacggctacaggctggaggctggagacataccaatcctaccagacgactctcttcct
attgggatgcttggctatgactactataggaagctgctccgctactatggcaagaatcac
cagggggaggcagtgaagtgctacgagctcctgacggtgcacctgggagtcattcccacc
gagatcatcctccagcactgcagacagctggccagcaaactatgggagccctcgcgcaat
ccactgctttag
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