Oryzias melastigma (Indian medaka): 112162357
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Entry
112162357 CDS
T07439
Symbol
trub1
Name
(RefSeq) probable tRNA pseudouridine synthase 1 isoform X1
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
oml
Oryzias melastigma (Indian medaka)
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
oml03016
]
112162357 (trub1)
Enzymes [BR:
oml01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
112162357 (trub1)
Transfer RNA biogenesis [BR:
oml03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
112162357 (trub1)
Prokaryotic type
112162357 (trub1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
GAIN_A
Pus10_C
Motif
Other DBs
NCBI-GeneID:
112162357
NCBI-ProteinID:
XP_024153933
Ensembl:
ENSOMEG00000014556
LinkDB
All DBs
Position
LG19:20122301..20127594
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AA seq
304 aa
AA seq
DB search
MKKTSRSSNQETLTAEEERMEAGMAGNTSSAATKMSSSLAKLQSLNGMFAIYKKKGPTSA
DVLNALKEALLKEAGVESSNPRKRRKQWLKMGHGGTLDSAASGVLVVGVGNGTKMLSSML
TGSKKYVAVGELGKATDTLDATGSVVLEKGFDHITRLELEEKLKSFTGDIMQVPPLFSAL
KKDGQRLSVLLKQGHKVEAKPARPVTVYSLTLQEFTPPLFTLDIECGGGFYVRSLVDELG
KALASCAHVKDLVRTKQGPFTLQEHVLHEQQWTLEDILQALQPAQTPLVQNQQNPAPEEK
PGPE
NT seq
915 nt
NT seq
+upstream
nt +downstream
nt
atgaagaaaaccagccgttccagtaaccaggaaactctgacagccgaagaagagcggatg
gaagcaggcatggctggaaacacgagcagcgccgcgactaagatgagcagctctctggcg
aagctgcagtcattaaacggaatgtttgctatttacaagaaaaaaggaccgacttccgct
gacgtgctgaacgcgctcaaagaagctttgctcaaagaagcgggagtggagtcgtccaac
ccccgcaagagaaggaagcagtggctgaagatgggccatggagggaccctggacagcgcc
gccagcggcgtgctagtggttggtgttgggaacggcacaaaaatgctcagctccatgctg
acaggctcaaagaagtacgttgctgtcggcgagctcgggaaggcgacagacactctggat
gccaccggcagcgtggttctggagaaaggctttgatcacatcaccaggctggaactggag
gaaaagctgaaatctttcactggggacatcatgcaggtccctccactcttctcggcgctg
aagaaagacggtcagcgtctgtctgtccttctgaagcaaggtcacaaggtggaggccaag
ccggcgcgtcccgtcacggtgtacagcctcaccctgcaggagttcacgccccccctcttc
actctggacatcgagtgtggaggggggttctacgtcaggagcttggtggacgagctgggc
aaagctctggcgtcgtgcgcccacgtgaaggacctggtgaggaccaagcagggcccgttc
acgctgcaggagcacgtcctgcacgagcagcagtggactctggaggacatcctgcaggcg
ctgcagcctgctcagacgccgctcgtccagaaccagcagaacccagcgccagaggagaag
ccgggccctgaatga
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