Oryzias melastigma (Indian medaka): 112162452
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Entry
112162452 CDS
T07439
Name
(RefSeq) semaphorin-6C
KO
K06842
semaphorin 6
Organism
oml
Oryzias melastigma (Indian medaka)
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Gene cluster
GFIT
Motif
Pfam:
Sema
PSI
Motif
Other DBs
NCBI-GeneID:
112162452
NCBI-ProteinID:
XP_024154002
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Position
LG11:complement(23030527..23111755)
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AA seq
1141 aa
AA seq
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MAATSWLLLWRSPPLPLLLLLLPLTSRFLSESASTTTFPKDLEPLVMVGSEHSYKYPGFQ
GLLQDNDTLRLGLDFQRMLRINHMLYIAARDHVFAVNLTTASEDFVPQLKLTWKSKDVGK
CTVRGKNSDECYNYVKVLVPRNDETLFACGTNAFNPTCRNYKMTSMEQVGEEVVGQARCP
FESGQSNVGLFAGGDFYSATMTDFLASDAVIYRSLGDDRPVLRTVKYDSKWLREPHFLHA
IDYGNYVYFFLSEIAVEYTALGKMVFSRVARVCKNDNGGSPRVLDRYWTSFLKARLNCSV
PGDSFFYFDVLQSLTNVLQINQRPAVVGVFTTQANSIPGSAVCAFYMDDIERVFNGKFKE
QRTSDSSWTPVPEEQVPRPRPGTCAGDGPASDYKSSVEFPDEMLTFIKSYPLMDEAVSSV
NDRPCFTRTSSRSKLTQIVVDVSAGPNKDRTVMFLGSDDGRVLKVLASTHPNDSFGSKLL
EDIDVYNPAKCNVQGQEDRRVLGLELDKDHHALFVAFSSCVIRVPLSRCTKHGACKTACL
ASRDPYCIWLHAGTCVNVAPGFKAGFQQDIEGNHSGSCHSDVLATTRNQESAADSAYGVR
RLPEIDQRASANVHYTLLIACVLVAFFLGAILSGFLVSCYCSRSSSHRARRLGKDPEASL
PHALSLRSLAKLNGLLDGQPKEDKLDVSTPKMYSSFIPNGRAEPHLHTPGHQGLQLGDPE
LSLSQGDGELSGLPTPDSTPEVHVRSLKAVRHHPYEKSQDCRDGGQKSGPSSSASAHGFM
AVVGGSLTQQAFPFSHHNPNALSNGAAHRDGASSTSLHLLEERESPNDERGPPASGGGRV
PHHHHSQQSLPQTVVDVSALDELLKHIHEVSASGTGGIKVLTSTSSSSLFPGAPSSSGGG
HLHHHHHHSHHSQTRTHHSHHHSNHHNSSSSSSSQHHQQQIPETESASYYSTTALPGGGV
PKRLDAAAQNSTSSSATSSSSSSSSSNNPTSSTSIPSSSSSSSSTPLQQQVIPERPGEAA
AAVASASRHQSQRHSIIKMGSGGGAVPRHHSFNQRGGHAHFLARMNTNSSSNGPPSAAAS
QRQSVASACLTRQHSYSGGPHVQRAAIVRRTVSLKPKVPPKPLFLPNTATSPVEEAGKYN
Y
NT seq
3426 nt
NT seq
+upstream
nt +downstream
nt
atggcagcgaccagctggctgttgctgtggcggtctccgccgctgccgctgctgctgctg
cttctccccctcacgtcccgcttcctgtccgagtccgcctccaccacgactttccccaaa
gacctggagcctctcgtcatggtcggctcggagcactcgtacaagtatccgggctttcag
ggtttgctccaggacaacgacacgctccgtctgggtctggatttccagagaatgttacgc
atcaaccacatgctgtacatcgcagcgagggatcatgtgtttgctgtgaacctgacgaca
gcttcagaagattttgttccccagctgaagttgacgtggaagtctaaagatgtcggcaag
tgtacagttagagggaagaacagcgatgaatgctacaactacgtcaaagtactggttccc
agaaatgatgagacgttgtttgcttgcgggaccaacgctttcaacccgacttgccggaat
tataagatgacctccatggagcaggtcggagaggaggtggtgggtcaggcccgctgtccg
tttgagtccggtcagtccaacgttggactctttgcaggtggagatttctactctgctacc
atgacggactttctggccagcgatgcggtcatctacaggagtcttggagacgaccgaccc
gttctcagaaccgtcaaatacgactccaagtggctgcgagagccgcacttcctgcacgcc
atcgactacgggaactatgtctactttttcttgagcgagatcgcagtggaatacacggcc
ctggggaagatggtgttttctcgagtcgctcgtgtttgtaagaatgataacggaggatct
cctcgagttctggacagatactggacgtcctttctgaaggctcgtctgaactgctccgtt
cccggagattccttcttctacttcgacgtcctccagtccctcaccaacgtgctgcagatc
aaccagaggccggcagtcgtcggcgtgttcaccactcaagctaacagcatcccaggctct
gcagtttgtgctttctacatggacgacatagaaagagtctttaacgggaagttcaaggag
cagaggaccagcgactcgtcgtggactccagtacctgaggagcaggttcccagaccgaga
cctggtacttgtgcaggtgatggtccagcgtcagactataaatcctctgtcgagttccca
gatgagatgctgactttcatcaagtcctaccctttgatggacgaagccgtttcctccgtt
aacgaccgcccatgcttcaccaggacctccagcaggtccaaattaactcagattgtggtg
gatgtttctgccggtcccaataaggatcgaactgtgatgttcttgggatctgatgatggg
cgagtgctaaaagttctggccagtacacatccaaacgacagcttcgggtccaagctcctg
gaggacatagacgtctacaaccctgcaaagtgtaatgttcagggtcaggaggacaggagg
gttctgggattggagctggacaaggaccaccacgccctgtttgtggccttcagcagctgc
gtcatcagagtgccgctcagccgctgcaccaaacatggcgcctgcaaaacagcctgcttg
gcctcccgtgacccctactgcatctggctccacgctggaacctgcgtcaacgtggcgccg
ggcttcaaagccgggttccagcaggatatcgagggcaaccactccggcagctgtcactct
gatgtgctggcgacaacacgaaaccaggagtctgcagccgactccgcctacggcgttcgc
cgtcttccagagatcgaccagcgagccagcgccaacgtccactacaccctgctgattgcg
tgtgtgctggtggcgttcttcctgggcgccatcctgtcgggtttcctggtgtcgtgctac
tgcagccgcagctcctcgcatcgggccaggaggctgggaaaggaccccgaagcgtccctg
ccgcacgccctgtcgctgcgatccctggctaaactcaacgggctgctggacggacaacca
aaggaagacaaactggatgtctccaccccgaaaatgtacagttctttcattcccaacggg
cgggccgagcctcaccttcacacccccggccaccagggcctgcagctgggggaccccgag
ctcagcctgtcccagggtgacggggagctgtccggcctgccgactccagactcgaccccg
gaggtccacgtcaggagcctgaaggccgtccggcaccatccgtacgagaagagccaggac
tgcagggacggcggccaaaagtccggccccagctcctccgcgtccgctcacggcttcatg
gccgtcgtcgggggctcgctgacccagcaggcgtttcccttctcccatcacaaccccaac
gctctgagcaacggggcggctcaccgagacggagcctcctccacctctctgcacctcctg
gaggagagggagagcccgaacgatgagcgaggaccgccagcatcaggaggaggacgggtc
ccacatcatcaccactcccaacagtccctcccccaaaccgtggtggacgtttccgcgctg
gacgagctgctcaaacacatccacgaggtcagcgcctcggggaccggcggcatcaaggtg
ctcacctccacctcctcgtcctcgctcttcccgggggcgccgtcctcctccgggggaggg
cacctacatcaccaccatcatcacagtcaccacagccagactcgcactcaccacagccat
caccatagcaaccaccacaacagcagcagcagcagcagcagccagcatcaccagcagcag
atcccggagacggagtctgcgtcctattacagcaccaccgccctgccgggaggcggagtc
cccaaacgcctggacgccgccgcccagaactccacctcctcctctgccacgtcctcatct
tcatcctcctcatcctccaataaccccacctcctccacctcaatcccttcctcctcctct
tcctcctcctcgactccccttcaacagcaggtgattcctgagcggcccggcgaggcggcg
gcggcggtggcttctgcgtcacgccaccagtcccagcgccactccatcatcaaaatgggc
agcgggggcggcgccgtcccccgtcaccatagctttaaccagcgggggggccacgcgcac
ttcctggcaaggatgaacaccaacagcagcagcaacggacctccgagcgccgccgccagc
cagcggcagtcggtcgccagcgcctgcctgacgcggcagcacagctacagcggggggccg
cacgtgcagcgggcggccatcgtccgcagaacggtctccctaaaacccaaagttccgcca
aaaccactttttctgccaaacacggcgacgtcgcccgtcgaggaagcgggaaagtacaac
tactga
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