Oryzias melastigma (Indian medaka): 112162531 Help Entry 112162531         CDS       T07439                                  Symbol skiv2l Name (RefSeq) helicase SKI2W isoform X1   KO K12599   antiviral helicase SKI2 [EC:5.6.2.6] Organism oml  Oryzias melastigma (Indian medaka) Pathway oml03018   RNA degradation Brite KEGG Orthology (KO) [BR:oml00001]  09120 Genetic Information Processing   09123 Folding, sorting and degradation    03018 RNA degradation     112162531 (skiv2l)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:oml03019]     112162531 (skiv2l) Enzymes [BR:oml01000]  5. Isomerases   5.6  Isomerases altering macromolecular conformation    5.6.2  Enzymes altering nucleic acid conformation     5.6.2.6  RNA 3'-5' helicase      112162531 (skiv2l) Messenger RNA biogenesis [BR:oml03019]  Eukaryotic type   mRNA surveillance and transport factors    Transport factors     eIF4F and regulatory proteins      112162531 (skiv2l)   mRNA degradation factors    3'-5' decay     Ski complex      112162531 (skiv2l) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  DSHCT Ski2_N MTR4_beta-barrel DEAD Helicase_C DEXQc_Suv3 MTR4-like_stalk ResIII Motif Other DBs NCBI-GeneID:  112162531 NCBI-ProteinID:  XP_024154096 Ensembl:  ENSOMEG00000008531 UniProt:  A0A3B3BQM9 LinkDB All DBs Position LG11:24778235..24813719 Genome browser AA seq 1243 aa AA seqDB search MERINVPPVGPMDLPLSLLELGCSGRFELITHPVPGQPLPPQSTLPHGLPPTSLTLETEV EKQFLRDPAWLPIHDTDFLFQKFPKVTQRKVDVDSLLSCSPSALQSGLSVVRDPTTGMLL DFTEVLLENTGLSAKNSLSLQRQPGPPSESLRGSNTNYPFLPGGMEELTLEQITKKSELE EEIDFENDLLKVPPGLKAGMDFTSKEAKIAKAEVNLMSLLSELEDSTDLQREEEEKEKEQ KKEKASNLPRTNSLEDLGIKDAAPSVSTSKGIDQPKPAESPQEQKKKWAVPVDISSPCED FYKRIPNPAFKWPFELDVFQKQAILRLEAHDSVFVAAHTSAGKTVVAEYAIALSQKHMTR TIYTSPIKALSNQKFRDFKTTFKDVGLLTGDVQLSPESSCLIMTTEILRSMLYNGSEVIR DLEWVIFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNALEFSEWIGRIKKRHI YVISTMKRPVPLEHHLYTGNSTKTQKEMFLLLDATGNFLTKGYYAAVDAKKERTSKHAQT FGTKNTSQNTTASQDRSVWLALLHFLSQRQQTPVVAFTFSRARCDDNARSLESMDLTTSI EKAEIHSFFQKSLSRLRGGDRQLPQILLMRDLLKRGVAVHHSGILPILKEVIEMLFSRGL VKVLFATETFAMGVNMPARTVVFDSIRKHDGTGFRNLLPGEYIQMAGRAGRRGLDATGTV IILCKAGVHEMSDLHAMMMGKPTLLQSQFRLTYTMILNLLRVEALRVTDMMKRSFSESHR NAQEHEKRISQLKQTLSSLPPLDTDGQLSDLLPYYHTVTELRVTNESLQKAIVESVNGLK ALSVGRVLVVNNKQHLNALGVILQVSSDAVNRTFTTLIICEKGNEDGKGEAGAAHPHLFN TALFIPEGPCSHTVQKLKLQDISAITVKTLKVIPDRIIDNYNKRQQPRFRHEPPGQAIST ATQELLRLAEANPGGVATLDPVNDLQLKSVDVVEGCMRLRMLQDSLKGFTCVHSPTFSEQ FARVQGRMSVQEELDRLLFLVSDQSLTLLPEYHQRIKVLQSLQYIDGGGAVQLKGRVACQ ISSHELLLTELLFENVLSPLAPEESAALLSCLVFTQNTQVEPHLTSSLKESIEQVLSVAR RIGELQRQCGIPQTAEEFVGQFKFGLTEVVYCWARGMPFAEIALLTDIQEGTVVRCIQRL DEVLKEVRQAARIVGDSVLGSKMEKASLAIRRDIVFTASLYTH NT seq 3732 nt NT seq  +upstreamnt  +downstreamnt atggaaagaataaatgtgccccctgtgggtcccatggacctgccgctgtctctgctggag ctgggatgctctggcaggtttgaactcatcacacatcctgtgcctggacagcctctacct ccccagagcacgcttcctcatggacttcctcccaccagcctgactctggaaacagaagtg gagaaacagttcctgcgagacccagcctggcttcccatacacgacacagactttctattt cagaaatttcccaaagtgacacaaaggaaggtggatgttgactctctgctcagttgctcc ccctccgctcttcagtcaggactctccgtggtcagagatccaaccacaggaatgctgttg gacttcacagaggtgttgctggagaacaccggactgtcggcgaagaactcgctgtcgctg cagcgccagccgggaccgccgtcagagagccttcgaggaagcaacaccaactaccccttc ctgcccggtgggatggaggagctcacattggagcaaatcacgaagaagtctgagctggag gaggaaatagactttgagaacgatttactgaaagtacctccggggcttaaagctgggatg gattttaccagcaaagaggctaaaatagcgaaggcggaggtcaacctgatgtccctcctg tctgagctggaagactccacagacctgcagcgtgaagaagaggagaaagagaaagagcag aagaaagaaaaagcttctaatttacccagaacgaacagccttgaagacctgggaatcaag gatgcggctccgtccgtgtccacctctaaaggaatagatcaaccgaagccagcagagagt ccccaggagcagaagaagaagtgggcggtccctgtggacatatcgtccccctgtgaggac ttctacaaacgcatccccaacccagcgttcaaatggccgtttgagctggacgtcttccag aaacaggcgatcctgaggctggaggcgcacgactccgtctttgtggctgcgcacacgtcg gcggggaagacggtggtggccgagtacgccatcgcgctctcgcagaaacacatgaccagg accatctacacgtctcccattaaagcgttgtccaatcagaagttccgagacttcaaaacc acctttaaggacgttggactccttacaggtgacgtccagctgagtcccgagtcctcctgc ctcatcatgaccaccgagatcctcaggtccatgctgtacaacggctccgaggtcatcagg gacttggagtgggtgatcttcgacgaggtccactacatcaacgatgcagagagaggagtt gtgtgggaggaggtgctgatcatgctcccggatcacgtcagcatcatcctcctcagcgcc accgtgccgaacgctctggagttcagcgagtggatcggccgcatcaagaagagacacatt tacgtgatcagcaccatgaagagacccgtccctctggagcatcacctgtacaccgggaac agcaccaagacccagaaggagatgttcctgctgctggacgccaccgggaatttcctcacc aaagggtattacgcagccgtcgatgccaagaaggagcgaaccagcaaacacgcccaaacg tttgggacaaagaacacctctcagaacacgacggcgagtcaggaccggtccgtgtggctg gcgctcctccacttcctgtcccagcggcagcagacccccgtggtggccttcaccttctcc cgggcgcggtgcgatgataacgctcgctcgctggagtccatggacctgaccacctccatc gagaaggcggagatccactccttcttccagaagagcctcagccgcctgcgggggggcgac cgccagctgccgcagattctgctgatgcgggacctcctgaagagaggcgtcgccgtccac cacagcggcatcctgcccatcctgaaggaggtcatcgagatgctcttctctcgcggtctg gtcaaggtgcttttcgccaccgagacgttcgcgatgggggtgaacatgccggcgaggacg gtggtgttcgacagcatcaggaagcacgacggcaccggcttcagaaacctgctgccaggt gaatacatccagatggctgggagagcgggacgacgaggtctggacgccaccggcaccgtg atcatcttgtgtaaggccggcgtgcacgagatgtctgatctgcacgccatgatgatggga aagccgactcttcttcagtcacagttcagactgacctacaccatgatcctcaacctgctg cgggtggaggcgctcagagtgacggacatgatgaagaggagcttttctgagagccacagg aacgctcaggaacacgagaagaggatcagccagctgaagcagacgttgtcctccttgcct cctctggacacggacggacagctgtccgacttgctgccgtactatcacaccgtgacggag ctgcgagtcaccaacgagtccctccagaaagccatcgtggagtcggtgaacggcctgaag gcgctgtccgtgggccgggtgctggtggtcaacaacaaacagcatctgaacgcgttgggg gtgatcctgcaggtgtccagtgacgccgtgaaccgcacgttcacaacgttgatcatctgt gagaaaggcaacgaggacggaaaaggagaagccggcgccgctcacccacacctgttcaac acggctctgttcatccctgaagggccctgcagccacacggtgcagaagctgaagctgcag gacatctcggccatcactgtgaaaaccctgaaagtgattccggaccggatcatagataac tacaacaagaggcaacagcctcgcttcaggcacgagcctccaggccaggccatctccacg gcaacgcaggagctgctgcgactggccgaggccaaccccggcggcgtggcgaccctggac cccgtcaacgacctgcagctgaagagcgtggacgtggtggagggctgcatgaggctgcgc atgctgcaggacagcctgaagggcttcacctgcgtccactcgcccaccttctcagagcag ttcgctcgggttcaggggaggatgagcgtccaggaggagctggaccggctcctcttcctg gtgtcagaccagtctctgactctgctgccggaataccaccagaggatcaaggtcctccag tccctccagtacatcgacggcggcggcgccgtgcagctgaagggccgggtggcctgccag atcagcagccacgagctgctgctgacggagctcctttttgagaacgtcctgagcccgctg gcgcccgaggagagcgccgccctgctgtcctgcctggtcttcacccagaacacccaggtg gagccgcatttaaccagctcgctgaaggagagcatcgagcaggtcctgtcggtggctcgg cgaatcggagagctgcagcgccaatgcgggatcccgcagacggccgaggagttcgtgggg cagttcaagttcggcctgacggaggtggtgtactgctgggccagaggcatgccgtttgca gagatcgccctgctgacggacatccaggagggcacggtggtccgctgcatccagcgcctg gacgaggtcctgaaggaggtgcggcaggcggcgcgcatcgtgggggactctgtgctgggg agcaaaatggagaaggcctccctggccatccgccgggacatcgtcttcacagcctccctg tacacccactga

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