Oryzias melastigma (Indian medaka): 112162546
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Entry
112162546 CDS
T07439
Name
(RefSeq) collagen alpha-1(XIV) chain isoform X3
KO
K08133
collagen type XIV alpha
Organism
oml
Oryzias melastigma (Indian medaka)
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
oml00535
]
112162546
Proteoglycans [BR:
oml00535
]
Extracellular matrix (ECM) proteoglycans
Others
112162546
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
fn3
Collagen
VWA_2
Ig_DSCAM-DSCAML_C
Pur_ac_phosph_N
Interfer-bind
DUF4959
VWA_3
Fn3_nematode
DUF4992
Motif
Other DBs
NCBI-GeneID:
112162546
NCBI-ProteinID:
XP_024154110
LinkDB
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Position
LG11:21493364..21643150
Genome browser
AA seq
1866 aa
AA seq
DB search
MQFSVRPSLCLLGCVLITLLPNSAQGQVSSPRRFRVKILSPTKLDVSWKEPKGEFESFKV
TYRMNPGGSQKVVELSKQKTNLLIEDFDSTKEYVFKITAVGGGQESKPLHGKLKAQRSVV
ESTQSQRGQSGTVTQENNEISEDMEGFMCKTPAIADIVILVDGSWSIGRINFRLVRTFLE
NLVRAFSVDFDKTRIGLAQYSGDPRIEWHLNTHSSKEAVIDAVKNLPYKGGNTLTGLALT
FILENSFKPESGSRPGVPKIGILITDGKSQDDVIPPAQSLKDAGIELFAIGVKNADENEL
KAIASPPEETHVYNVADFSVMSDIVEGLTKGVCDRVDQLDKQIKGGGEPAPPPTSLAPPR
DLVISEITARSFRLTWTHATGQVEKYRVVYYPASGGRPEEKVVQGADNSVELNYLNSLTE
YQVAVFAIYRSSASEALRGSATTLALPTVNNLELLDITHSTMRVVWRAAAGATGYMILYA
PLTEGESADEKEVKVADSVNEVELEGLTPDTEYTVTVYAMYGEEASDPMTSQETTLPLIP
ARNLRFSEVDHSSARLTWESASRLVRGYRIMYVKTNGVQTTEVDVGKVTTYILRNLTSLT
EYTVGVFAVYDEGEAEAVTESFTTKVVPDPLDLRSSDITTESFRVSWRHAATDVILYRIT
WTPTDGGDSKDFMVDGNVNTYVIRGLSPDSEYEVLVAAIYANERESDEVILVETTAKRTT
TIATTTTTPSPRLGVRNMKIDDETTFSLRVSWQPVDARNVRQYRLSYISMRGDRATETRT
IPSAQNSIILQPLLSDTEYKITLTPVYPEGDGPMASQVGRTLPLTAPKNLRVSEEWYNRF
RISWDVPPSPTMGYRVVYQPLSAPGPALETFVGEDVNTMLIVNLLSGTEYSVKVIASYTT
GSSEALSGRAKTLYLGVTNLSTYQVRMTSVCAQWQTHRHASAYRVVIQPLLGSQKQENRL
SGGSSRHCFNNLKPNTEYKISVYAQLQDGTEGPAATATVKTLPVPTQAPTKPPSTTPLPT
IPSAKEVCRAAKADLVFLVDGSWSIGDDNFLKIIRFLYSTVGALDRIGPDGTQVAIAQFS
DDARTEFKLNSYTDKERLLDAINKISYKGGNTKTGRAIQHVKENIFTAEGGVRRGIPNVL
VVLTDGRSQDDVNKVSKEMQMEGYIVFAIGFADADYGELVSIASKPSDRHVFFVDDLDAF
QKIEEKLVTFVCEAATATCPSVPMSGSTTPGFRMMELFGLVEDRYNSIYGVSMVPGTFNA
FPSFHLHSNALLAQPTRFIHPEGLPSDYTISLLFRLLHDTPEEPFALWEILNKDNDPLAG
VILDNGGKTLTFFNNDYKGVFQTVTFEGPEIKKLFFGSFHKLHVAISKTSAKVFVDCKMV
AEKAINAAGNITTDGLEVLGRMVRSRANKDNSAPFQLQNFDIVCSTSWASRDKCCELPGL
RKEVECPALPKACTCTQDSKGPPGPPGVPGGPGIRGARGDRGEPGPVGPAGAVGDMGAQG
PQGPPGPQGPSGRSIIGPPGAPGERGQKGDPGQQGQQGIPGRPGGPGREGPPGPRGLVGK
DGPQGRPGPPGSMGTPGAPGSPGSTGPPGKQGELGPPGSPGSKGEKGDRGDVQSTASVQA
IARQVCEQLIQSHMARYNTILNQVPSPPVSIRTVPGPPGEPGRQGSPGPQGEQGPPGRPG
FPGQNGQNGNPGERGQPGEKGEKGSQGVGVQGPRGAPGSPGAPGQGRPGNQGPTGRPGNP
GAPGRPGVPGPVGPPGPPGYCDQNSCVGYNVGEGEDVTDRGAVSAVQLPPNVFQNYGEVE
EDDPYRYYQPNYPAPQPVSPDDPSVGHGDIELRSPGVYRSSRSVGEKVGPKRRLKSRAKE
LPGLTN
NT seq
5601 nt
NT seq
+upstream
nt +downstream
nt
atgcagttctcagtcaggccgagcctctgcttgctgggctgtgttctcatcactctgctc
cctaactcagcacaaggtcaagtttcatcaccaaggaggtttcgagtaaaaatcttgagt
cctaccaagctggatgtgtcctggaaggaaccaaaaggagaatttgaaagcttcaaggtc
acgtacagaatgaacccaggtggaagtcaaaaggtggttgaactttcaaagcagaaaacc
aatctgcttattgaagatttcgattccactaaagagtacgtcttcaaaatcaccgcagtc
ggaggaggacaggagagcaaacctctccacggcaaactcaaagctcagcggtctgtggtt
gaatccactcagtcccagcgaggtcagagtggcaccgtgactcaggagaacaacgagatc
tcagaagacatggagggatttatgtgcaagactccagccatagcagacattgtgatcctg
gtggacggctcctggagtatcggacggatcaacttcaggttggtccggactttcctggaa
aacctggtcagagctttctccgtggactttgacaagaccaggataggtctggctcagtac
agcggagaccccagaatcgagtggcatctgaacactcactcctccaaggaagctgtgatt
gacgctgtgaagaacctgccgtataaaggaggaaacacactgacaggtctggctctgacc
ttcatcctggaaaacagcttcaaaccagagtctgggtcccggcctggcgttcccaagatt
ggaatactgatcacggatgggaagtcccaggatgatgtgattcccccggcgcagagcctg
aaggatgctgggatagaactttttgccattggtgtgaaaaacgctgatgagaacgagctg
aaggccatcgcctctcctccagaggaaactcacgtctacaacgtggcagacttcagcgtg
atgagcgacatcgtagaaggtctgactaaaggggtctgcgaccgagtggatcagctcgac
aagcagatcaaaggaggaggagaacctgcccctcctcccacctccttagccccccctcgc
gaccttgtgatatctgagataacggcgcgcagcttccggttgacatggactcacgctacg
gggcaggtggagaaataccgagtggtgtactaccccgccagcggaggaagaccagaggaa
aaagtggtccagggggctgacaacagcgtggagctgaactacctcaactctctgacggag
taccaggtggccgtgttcgccatctaccgcagctccgcaagcgaggccctccgaggaagc
gctaccacattggcgttgcctacagtcaacaacctggagctgctggatatcacccacagc
accatgagagtggtctggagggccgccgccggggctacggggtacatgatcctgtacgcc
ccgctgaccgaaggagagtctgcagatgagaaggaggtgaaagtggcagactctgtgaat
gaagtggagctggagggactgacgcccgatacagaatacactgtgacagtttatgccatg
tatggcgaggaggccagtgaccccatgaccagccaggaaaccacattgccgctgatccca
gcaagaaacctgcgtttctctgaagtggaccacagctctgcccgcctcacctgggaatct
gcctccaggttggtcaggggttaccgcatcatgtatgtcaagaccaacggggtgcagacc
acagaggtggatgttggcaaagtgacgacctatatactgaggaacctgacctccctgacg
gagtacactgttggtgtgtttgccgtctatgatgaaggagaagctgaagctgtgaccgag
agcttcacaacaaaggttgtccccgacccgctggatctgaggagcagcgacatcaccaca
gagagcttcagggtgtcatggcgacacgccgcaactgatgtgattctgtatcggatcacc
tggactccgacagatggaggggacagtaaagattttatggtggacggcaacgtgaacacc
tatgtgatcagaggattaagcccggactcagagtatgaagtcctcgtggcggccatctat
gcaaatgagcgcgagagcgatgaggtcatccttgtggagaccacggctaagagaacaact
accattgccacaactaccacaacaccaagtcctcgactcggagtgaggaacatgaagatt
gatgatgaaaccacgttcagcttgcgggtgtcctggcagccagtcgacgccagaaacgtc
cgacagtatcgactgagctacatcagcatgcggggagaccgggcgacggagacgagaaca
atcccgtccgctcagaacagcatcatcctgcagccgctcctgtcggacacagagtacaaa
atcaccctcacaccggtctaccctgagggagacggaccgatggcctcccaagtgggacga
acccttcctctcacggctcctaagaacctccgggtttcggaagaatggtacaaccgcttc
aggatcagctgggacgtcccgccttcgcccaccatggggtacagggttgtgtaccagcct
ctttctgcgcctggaccggctctggagacgtttgttggggaagacgtgaacaccatgctg
atcgtcaacctgctgagcgggacggagtacagcgtcaaagtcatcgcctcctacaccaca
ggatccagcgaagccctctcaggcagagcaaagaccttgtacctgggcgtgactaacctg
agcacataccaggtgaggatgaccagtgtgtgcgctcagtggcagacccatagacacgcc
agcgcctacagagtggtcatccagccactgctcggtagtcagaagcaggaaaaccggctg
agtggaggatccagccgacactgtttcaacaacctaaagcccaacacggagtataagatc
agtgtttacgctcagctgcaggacgggacggaaggacctgccgccaccgccactgtgaag
acattaccagtcccgacccaggcgccgaccaagcccccctccaccacgccgttacccaca
atcccctctgcgaaggaagtctgcagagcagccaaagctgacttggtcttcctggttgat
ggatcctggagtattggagacgacaactttctgaagatcattcggttcctgtacagcacc
gtcggagctctggaccggatcggaccagatgggacacaggtggccattgcccagttcagc
gacgacgctcgcaccgagttcaagctgaactcgtacaccgataaggagcgcctgctggac
gccatcaacaaaatctcctacaaaggtggaaacaccaagacgggccgagccatccagcat
gtgaaggagaacatcttcaccgcagagggaggagtcaggaggggcatccccaacgtgctc
gtcgtcctcactgacgggcgatctcaagacgatgtcaacaaagtgtccaaagaaatgcag
atggaaggctacattgtgtttgcaattggcttcgctgacgccgactacggcgagctggtg
agcatcgccagtaaacccagcgacagacacgtcttctttgtggacgacttggacgccttc
cagaagatcgaagagaagctggtgacctttgtgtgcgaggccgccacagccacttgtcct
tctgtacccatgagtggcagcacaactccaggtttccgcatgatggagctgttcggtctt
gttgaggaccgctacaacagcatctatggtgtttccatggtaccgggaacctttaatgct
ttcccttctttccacctgcacagtaacgctctgctggctcagccaaccaggttcatccat
ccagaggggcttccgtcagactacaccatctcactgctgttcagactgctgcacgacact
ccagaggagcccttcgccctctgggagatcctcaacaaagataacgatcccttggctgga
gtcattctggacaatggaggaaaaactttaactttttttaacaacgactacaaaggggtt
ttccagacggtcacttttgagggaccagagatcaaaaagcttttctttggcagcttccac
aagcttcatgtcgcaattagcaagacaagtgccaaagtgtttgtggactgcaagatggtg
gcggagaaagccatcaatgcagcaggaaacatcaccacagacggactggaggttctgggc
aggatggtccgctccagagccaacaaggacaactctgcaccgtttcagctgcagaacttt
gacatcgtctgcagcacatcctgggccagcagagataagtgctgtgaacttcctggtctg
aggaaggaggtagagtgtccggccttgcccaaagcctgtacctgcacacaggacagtaaa
ggcccccccggccctcctggagtaccaggcggtcctggaatcagaggagcccgaggcgac
cgcggagagccaggtcctgtgggtcctgctggtgctgtcggggatatgggcgcccaagga
ccccaaggacctccggggcctcagggacccagtggacgctccattatcggacccccaggc
gccccaggagagagaggccagaaaggggatccaggacaacaagggcaacaaggaattcct
ggaagacctggaggaccaggaagggaaggacctccaggacccagaggacttgtgggtaaa
gatggaccacaaggaagaccaggccccccaggatctatgggaactccaggagctccagga
tctccaggaagtacaggtcctcctggaaaacagggagaactgggaccgccgggttcccct
ggaagcaaaggagagaaaggtgaccggggagacgttcaatcaacagcatcagttcaggcc
atcgccaggcaggtgtgtgagcagctgatccaaagtcacatggctcgttacaacaccatc
ctgaaccaggtgcccagtcctcctgtgtccatccgcacggtacctggacccccaggagag
cctggccgacaaggctccccagggccccaaggtgaacagggtccacccggtagaccagga
ttccccggacagaacggtcagaatggaaatccaggagaaagaggacaaccaggagaaaag
ggtgagaagggatctcaaggtgttggagtccaaggcccaagaggagctccaggatctcct
ggtgctccgggacaaggcagacccggcaatcagggtccaacggggcgacctggaaacccc
ggagctcctggtcggcctggagtccccggtccagtgggacccccaggacctcccggatac
tgtgaccagaactcctgtgtgggctacaacgttggagagggtgaggatgtgactgaccgc
ggcgctgtctccgcagtccaactgccgcccaacgtcttccaaaactacggcgaggtcgag
gaggacgacccgtaccgctactaccaacccaactacccggcgccgcagcccgtgtcgccg
gacgacccctcggtgggccacggcgacatcgagctcaggtcccccggcgtttaccgcagt
tctcggagcgtgggggagaaagtcgggcccaagaggagactaaagagcagagctaaagag
cttccgggactaactaactga
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