Oryzias melastigma (Indian medaka): 112162784 Help Entry 112162784         CDS       T07439                                  Symbol col1a2 Name (RefSeq) collagen alpha-2(I) chain   KO K06236   collagen type I alpha Organism oml  Oryzias melastigma (Indian medaka) Pathway oml04510   Focal adhesion oml04512   ECM-receptor interaction oml04518   Integrin signaling oml04820   Cytoskeleton in muscle cells Brite KEGG Orthology (KO) [BR:oml00001]  09130 Environmental Information Processing   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     112162784 (col1a2)    04518 Integrin signaling     112162784 (col1a2)  09140 Cellular Processes   09144 Cellular community - eukaryotes    04510 Focal adhesion     112162784 (col1a2)   09142 Cell motility    04820 Cytoskeleton in muscle cells     112162784 (col1a2)  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:oml00536]     112162784 (col1a2) Glycosaminoglycan binding proteins [BR:oml00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    112162784 (col1a2) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Collagen COLFI Motif Other DBs NCBI-GeneID:  112162784 NCBI-ProteinID:  XP_024154448 Ensembl:  ENSOMEG00000000803 LinkDB All DBs Position LG11:complement(8918970..8933924) Genome browser AA seq 1356 aa AA seqDB search MLSFVDTRILLLLAVTSYLTSCQFTGPMGDKGPRGDRGPSGPNGKDGKPGLPGPPGPPGP PGPSGLGGNFAAQYDGAKAPDPGPGPMGLMGPRGPPGLPGPPGPQGHTGHPGEPGEPGQA GALGPRGPPGPPGKAGEDGNNGRPGKPGDRGAPGPQGARGFPGTPGLPGMKGHRGYTGLD GRKGEPGAAGAKGEPGAHGASGSPGLAGQRGLPGERGRPGPAGPAGARGADGNVGPAGPA GPMGAAGPPGFPGGPGPKGEVGAIGATGPSGPQGNRGEPGPNGAVGPVGPPGNPGSNGLN GAKGAAGAPGPGGAPGFAGARGGPGPQGPQGAAGPRGLAGDPGPQGTKGDTGPKGEPGNA GPQGAPGPQGEEGKRGPTGELGATGTAGNRGARGAPGSRGLPGSEGRTGPIGMPGARGST GSAGPRGPPGDAGRAGEPGPAGLRGLPGSPGSSGPPGKEGPAGPAGQDGRAGPPGPTGPR GQPGNIGFPGPKGPSGEPGKPGERGSTGPTGLRGPPGPDGNNGAAGPVGAVGAPGDKGEQ GPSGAAGFQGLPGLAGPAGEAGKPGERGIPGDQGVSGPAGAKGERGNNGSPGATGPQGPI GPRGPAGAPGADGGKGEPGAAGAAGAPGHQGPGGMPGERGAAGTPGPKGEKGEPGHKGPD GNSGRDGARGLPGPAGPPGPNGANGDKGESGSFGPAGPAGPRGPSGERGEVGPAGPPGFS GPPGADGQPGARGERGPAGGKGEAGPAGPSGPAGQSGPPGPSGPAGPPGARGDTGPVGLT GFAGAPGRVGAPGQAGIVGPPGLAGPSGKDGPRGPRGDPGPAGPSGEQGMVGPPGVSGEK GSPGESGPAGPPGPPGTTGPLGLQGFVGLSGARGDRGTPGAAGAVGEPGRVGPPGSSGPR GPPGNIGMPGMTGPQGEAGRDGNPGNDGPPGRPGAAGFKGDRGEPGPAGSMGLAGSPGPA GPTGAPGRPGGRGEAGPSGPVGPAGIAGARGNAGPAGPRGEKGVAGDKGERGMKGLRGHP GLQGMPGPSGPAGDSGPAGPTGLSGPRGPAGPHGPPGKDGRSGAHGTIGAPGARGPPGTS GPAGPPGAPGLPGPPGPAGGGYDVSGGYDEYRADQPALRAKDYEVDATIKSLNTQIENLL TPEGSRKNPARTCRDIRLGHPEWSSGFYWIDPNQGCINDAIKVFCDFTTRETCIYSHPES IARKNWFRSTENKKHVWFGETINGGTEFAYNDDTLSPQSMATQLAFMRLLSNQASQNITY HCKNSIAYMDGESGNLKKAVVLQGSNDVELRAEGNSRFTFSVLEDGCTRHTGEWSKTVIE YRTNKPSRLPILDIAPLDIGEADQEFGLDIGPVCFK NT seq 4071 nt NT seq  +upstreamnt  +downstreamnt atgctcagctttgtggatacccggattctgttgctgcttgcagtaacttcatacctaaca tcatgtcaatttacgggccccatgggagacaaaggacctcgaggtgacaggggtccttca ggcccaaatggaaaagatggcaagcccggactccctggccctcctggcccccctggaccc cctggaccttctggactcggaggaaactttgctgctcagtatgatggtgcgaaagcccct gatcccggccctggacccatgggcttgatgggtcccagaggacccccaggacttcccgga ccccctggacctcagggacacacaggacaccctggcgagcctggagagcccggacaagct ggcgctcttggtccccgtggcccccctggacctcctggcaaagctggagaagatggtaac aacggcagacctggcaagcctggcgacaggggcgcccctggccctcagggagctcgcgga ttccccggaacccctggacttccaggaatgaagggacacagaggttacactggtctggat ggacgtaaaggagaacctggtgctgctggtgctaaaggtgaacctggggcccacggagcc tctggaagtccaggcttggctggacaacgcggtctgcctggtgagagaggtcgtcccggt cccgccggccctgctggtgctcgtggtgctgacggcaacgttggacccgctggtcccgct ggtcccatgggtgctgctggtcctccagggttccctggtggtcctggccctaagggagag gttggagctattggtgcaactggcccatctggacctcaaggcaacagaggagagcctgga cccaatggtgcagtcggacctgtcggcccccctggtaaccctggttccaatggcctgaac ggagcaaagggagctgctggtgcccctggccctggtggagctcctggctttgctggtgca agaggaggacctggaccccagggaccccagggtgctgctggaccaagaggccttgctgga gatcctggtcctcagggcaccaagggagacactgggcccaaaggagagcctggtaacgca ggaccccagggagccccaggacctcagggagaggaaggcaagagaggacccactggtgag cttggtgccactggaactgcaggcaaccgtggagcaagaggtgctcctggcagccgtggt ctgcccggttcggagggaagaactggccccattggtatgcctggcgctcgtggctccact ggttctgctggaccacgtgggccccctggagatgctggtcgtgctggtgagcctggccca gctggtctcaggggtctcccaggaagccctggaagctctggacctccaggaaaagaggga cctgctggtcctgctggacaagatgggcgtgctggacctccaggcccaactggaccaaga ggccagcctggaaacattggtttccccggacccaaaggaccatctggagagcctggcaaa cctggagagaggggatccaccggtcctactggactgagaggacctcctggtcctgatggc aacaatggagctgctggccccgttggagctgttggtgcccctggtgacaaaggagaacaa ggaccctctggagctgctggtttccagggtctgcctggacttgctggaccagctggagag gcaggcaagcctggagaaagaggtatcccaggagatcagggagtctctggacctgctggt gccaagggagagcgtggcaacaatggcagtccaggagctactggccctcagggaccaatt ggacctcgtggccctgctggagccccaggagctgatggtggcaagggagagcctggtgct gctggagctgctggtgctcccggacaccagggacctggaggcatgcctggtgagcgtgga gcagcaggaacccctggacctaaaggagaaaagggagaacctggacacaaaggccctgat ggaaattctggcagagatggagctcgcggtcttcccggacctgcaggacctcctggacca aatggagccaatggtgataagggtgagagtggttcttttggacctgctggccctgctgga ccccgcggaccctctggagagcgtggcgaggtcggacctgctggacctcctggattctcc ggaccccctggtgctgatggtcagcctggagcaagaggagagcgtggacctgctggagga aagggtgaagctggccccgctgggccttctggacccgctggacagtctggacctcctggt ccttctggccccgctggaccccctggtgctcgtggagacaccggtcctgttggtctcact ggcttcgctggtgctcctggtagagttggtgctcctggtcaagcgggtatagttggacct ccaggtcttgctggtccctctggcaaggatggcccccgtggtccccgtggtgaccctggt cctgctggtccttctggtgagcaaggaatggttggaccacctggtgtatctggagagaag ggatcccctggagagtccggtcccgctggacctcctggccctcctggaaccactggtcct cttggacttcaaggatttgttggtctgtctggtgctagaggagaccgtggtacacctggt gccgccggtgctgtgggagagccaggaagagttggacctccaggttcctcaggacctcgt ggtcctcctggcaacattggtatgcctggcatgaccggacctcagggagaagctggacgt gatggtaaccctggtaacgatggaccccctggtcgtcctggtgctgctggattcaaggga gaccgtggagagcccggacctgctggctcaatgggacttgctggatcccccggacctgct ggacccactggagcccctggcagacctggaggccgtggagaagctggcccatctggtcct gttggacctgctggtattgctggagccagaggcaatgctggacccgctggacctcgtggt gagaagggagttgctggagacaagggtgagagaggcatgaagggtctgcgtggacaccct ggtctccagggaatgcctggaccatctggacctgctggtgacagcggacctgctggacca actggactttctggacccagaggacctgctggacctcatggacctcctggcaaagatggc agatctggtgcccatggtactattggtgctcctggtgctcgtggacctcctggaacctct ggaccagctggtcctcctggagctcccggtctccccggacctcctggccctgccggcggt ggatacgacgtctctggtggatacgatgagtacagagctgaccagcccgctttgagagct aaggattacgaggttgatgccaccatcaagtcactcaacacccagattgagaacctgctt acccctgagggatctaggaagaacccagcccgcacctgccgtgacatcaggctaggccac cctgaatggagcagcggattctactggatcgaccccaaccagggctgcataaatgacgcc atcaaggtcttctgcgacttcaccacccgtgagacctgcatctactcccaccctgagagc atcgcccgcaagaactggttcagaagcaccgagaacaagaaacacgtctggtttggagag accatcaatggtggtaccgagtttgcctacaacgacgacaccctgagcccccagagcatg gccacccagctggctttcatgcgcctgctttccaatcaggccagtcagaacatcacctac cactgcaagaacagcatcgcctacatggatggtgagagcggcaacctgaagaaggctgtg gtgctccagggttccaacgacgtggagctcagagctgaaggcaacagccgcttcaccttc tccgtgctggaggacggctgcactagacacactggtgaatggagcaagacagttattgag tacagaacaaataaaccatctcgcctccccatcctcgacattgcacctttggacattggt gaagccgaccaggagtttggtttggacattggcccagtctgtttcaaatga

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