Oryzias melastigma (Indian medaka): 112162889
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Entry
112162889 CDS
T07439
Name
(RefSeq) rab GTPase-activating protein 1 isoform X1
KO
K20284
Rab GTPase-activating protein 1
Organism
oml
Oryzias melastigma (Indian medaka)
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
oml04131
]
112162889
Membrane trafficking [BR:
oml04131
]
Endosome - Golgi transport
Rab GTPases and associated proteins
Rab associated proteins
112162889
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RabGAP-TBC
RabGap-TBC_2
DUF3694
PID
PTB
UPF0242
Motif
Other DBs
NCBI-GeneID:
112162889
NCBI-ProteinID:
XP_024154620
Ensembl:
ENSOMEG00000023491
LinkDB
All DBs
Position
LG12:14709188..14763845
Genome browser
AA seq
1091 aa
AA seq
DB search
MDDKGSVGKISVSSDSVSTLNSEDFVLVSRLGDETPSSTNNGSDDEKTGLKVISEEGVSF
KIVGNGSEQQLQRELEDVLMDPSVQDAGLGSERRLESVCSDDSSPHLNRPSPVPPGLDPL
SSPPPKLEMVLPVQTPQESELNERSYRADESSSEGSPCSPIPDEDSVVFSQLTYLGCASV
NAPRSEVEALRMMSILRGQCQLPLDVTLSVPGVSEGTVRLLDPHNNTEIANYPIYKILFC
VRGHDGTPESDCFAFTESHYNAEIFRIHVFRCQIREAVSRILYSFATAFRRSAKKSLLSS
QQAPPLTPDSDLFTFTVSLEIKEDDGKGTFSAVAKDKDKQSFKLRAGMDKKIVIYVQQTS
NKELAIERCFGLLLSPGKNVKNSDMHLLDLESMGKSSDGKSYIITGSWNPNTPQFQAVNE
ETPKDKFMYMTTAVDLVITEVEEPVRFLLETRVRVCSPNDRLFWPFSKRSFTETFYLKLR
QMERKERKSPASDTLYEVVSLESESEREKRKTTASPSIVLGGAGTGAPSPPEDDEEEDND
EPLLSGSGDVSKECAEKILETWGDLLSKWHMNLSVRPKQLPALVRSGIPEALRGEVWQLL
AGCHNNDHLVEEYRTLITKESPQDSAITRDINRTFPAHDYFKDTGGDGQDSLYKICKAYS
VYDEEIGYCQGQSFLAAVLLLHMPEEQAFSVLVKIMFDYGLRDLFKQNFEDLHCKFFQLE
RLMQECIPDLYNHFLNVGLEAHMYASQWFLTLFTAKFPLYMVFHIIDLLLCEGISVIFNV
ALALLKTSKDDLIQSDFEGALKFFRVPVPKRYRSEENAKKLMELACSMKISQKKLKKFEK
EYHTIREQQEQQEAPIERYERENRRLQEANMRLEQENDDLAHELVSSKIALRKDLDNAEE
KADALNKELLLTKQKLVDSEDEKRRLEEESAQLKEMCRRELDKSESEIKKNGSIIGEYKQ
ICSQLSQRLEKQQTATRGELEKIRSKVEGCEKCSSLFNKEGRVRPAVTTAPAGGTEETDE
EKESLKNQLREMELELAQTKLQLVEAECKIQDLEHHLGLALNEVQAAKKTWFNRTLSSIK
TVTGTQGKDTA
NT seq
3276 nt
NT seq
+upstream
nt +downstream
nt
atggatgacaagggctcagtggggaagattagcgtgtcttcagactcagtgtccactctc
aacagtgaggactttgtccttgtgtcccggctgggggatgagacaccctcttctactaat
aatggtagtgatgatgagaagacaggactgaaggtgatttctgaggaaggggtcagcttt
aagattgtggggaatgggagtgagcagcagcttcaacgggagttagaggacgtcctcatg
gacccgtcggtgcaggacgccgggctgggatcagagcggagattagagagtgtttgcagc
gacgattccagccctcaccttaatcgaccgtcgcccgtaccgccaggcctggaccctctg
agttcaccgccccccaagctggagatggtgcttcctgttcagacgccccaggagagcgag
ctgaacgagaggtcttacagagcagatgaatcctcatcggagggcagtccttgcagcccc
attccagacgaggacagcgttgtgttcagccagctcacatatctaggatgtgcctcggtc
aacgccccccgcagcgaggtggaggccctgcggatgatgagcattcttagggggcagtgc
cagctccctctggatgttaccctgtctgtgccaggcgtgtctgaaggcaccgtcaggttg
ttggatccccacaacaacacagagattgccaactatcccatctacaagattctgttctgt
gtgcgaggccatgacggcacgccggagagcgactgcttcgccttcactgagagtcactac
aacgctgagatattcaggatccacgtgttccgctgccaaatacgagaggcggtgagtagg
atactgtacagttttgccacagcctttcggcgctcggcgaagaagtcccttctctcatcg
cagcaagctcctcccctcactcctgacagtgacctgttcacctttacggtcagtctggag
attaaagaggatgatggcaagggcaccttcagtgctgtagcaaaagacaaggacaaacag
agcttcaagctgcgcgcaggaatggacaagaaaattgtcatttatgttcagcagacctcc
aacaaggagctggctatcgagaggtgtttcggactgctgctcagcccagggaaaaatgtg
aaaaacagcgacatgcacctgctggatctggagtcaatgggaaaaagctcagacggaaag
tcttacatcatcacaggaagttggaaccccaacacgcctcagttccaggcggtaaacgag
gaaacacccaaagataaattcatgtatatgacgacagcagtggacctggtgatcacagag
gtcgaggagccggtccgttttctgctggagacgagggtcagagtgtgctctcccaatgac
cggctgttctggcccttcagcaagcgcagcttcacagagaccttctaccttaaactgcga
cagatggagcggaaagagcgaaagagtcctgcctctgacacactttacgaggtggtgagt
ttggaaagtgagtccgaaagagaaaaaaggaaaaccacagcgagccccagcatcgtcctg
ggtggagctggcaccggggctccttcgccgccggaagatgatgaggaggaagataacgac
gagcccctgctgagcgggtcaggagacgtctcaaaggaatgtgctgagaagattctggag
acctggggagacttgctgtccaagtggcacatgaacttatcggtgcgtcccaaacagctg
ccagctttggtgcgaagcgggatccctgaggcactccgcggggaggtgtggcagctcctt
gcaggctgtcacaacaatgaccacctggtagaagagtatcgaactctgattacaaaggag
tctccccaggacagtgcaatcaccagggacattaacaggacgttccctgctcacgactac
ttcaaagacactggaggagatgggcaagactccctctacaagatctgcaaggcttactct
gtttatgatgaagagatagggtactgccagggacagtctttcttggctgcagtgctgctc
ctgcacatgccagaggagcaagcttttagtgtcctggtgaagatcatgtttgattatggg
ctcagggaccttttcaaacagaactttgaagatctgcactgcaagtttttccagctggag
agactcatgcaggaatgtattccagatctatacaaccatttcctgaatgtgggcctggag
gctcatatgtatgcttctcagtggttcctcaccctcttcaccgccaagttccctctctac
atggtcttccatataattgacttgctactgtgtgagggaataagtgtgatttttaatgta
gccttggcgcttctaaagacgtcaaaagacgatctaatccaatcggactttgaaggtgca
ctcaagttctttcgtgtcccggtcccaaagaggtaccgctctgaggaaaacgccaagaaa
ctgatggaactggcctgcagcatgaagatcagccagaagaagttgaagaaatttgagaaa
gagtatcacaccatacgggagcaacaagagcagcaggaagccccgattgagagatatgag
cgagagaaccgacgcctgcaggaggccaacatgcgcttggagcaggagaacgacgacttg
gcgcacgaactagtcagcagcaagatcgccctgagaaaagacctcgacaacgctgaggag
aaggcagacgccctgaataaagagttgctgctgaccaaacagaagctggtggactcggag
gacgagaagaggcgactggaagaggagtctgctcagctgaaggagatgtgcagacgggag
ctcgataagtcggaatctgagatcaagaagaacggttccatcattggggaatacaaacag
atttgctcccagctgagccaacgcctggagaagcagcagacagccaccagaggggagctg
gagaaaatccgatccaaagttgaaggctgtgagaagtgcagcagtctcttcaacaaggag
gggcgtgtgcggcccgccgtaaccacggcgcccgccgggggaacggaggagacggacgag
gagaaggagagcctaaagaaccagctgagggagatggagctggagctggcgcagaccaaa
ctacagctggtggaggcggagtgcaaaatccaggacctggagcaccatctgggtctggct
ctgaatgaggtgcaggccgccaagaagacctggttcaaccgaacgctcagctctatcaag
accgtcaccgggacccaggggaaggacaccgcctaa
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