Oryzias melastigma (Indian medaka): 112162944
Help
Entry
112162944 CDS
T07439
Symbol
zcchc9
Name
(RefSeq) zinc finger CCHC domain-containing protein 9
KO
K10886
DNA-repair protein XRCC4
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
112162944 (zcchc9)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
oml03400
]
112162944 (zcchc9)
DNA repair and recombination proteins [BR:
oml03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
112162944 (zcchc9)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRCC4_CC
XRCC4
XRCC4_C
zf-CCHC
zf-CCHC_2
Motif
Other DBs
NCBI-GeneID:
112162944
NCBI-ProteinID:
XP_024154723
LinkDB
All DBs
Position
LG12:719761..744889
Genome browser
AA seq
550 aa
AA seq
DB search
MTRWARANNVHRNKPAEATPWSQLRGRGSGGGARGDPLRKTQAGGSSSKNRKKKDYTNED
VNGFLEYLKESGAPPPAGRPERQQEELVQEVEEALKRDTRRENRRVKRQNDKKNKMLCFN
CRKPGHGLADCPEADADRDMGRGICYRCGSTEHEIHKCRAKVDPALGDYPYAKCFICGQT
GHLSRSCPDNPKGLYAQGGSCRLCGSVEHFQKDCPEHQAARMNTAVREIRVSSQPGSSYF
LRVDWKGRSLASGFRVLLTDGQDAWRGEVGEATMSGEAAELEMTMEKYIQDLERALTGAG
EPDSYSFSLSPEAASGGVTLTYEKMQKEISFRLGSVLLEAELRPAEALRQLLLHSLQRGN
GLQNQNQKLQEENQRLRGEQQRICAELQRYAGGKEALEAELYSRFVLVLNEKKAKIRHLQ
DGLSKLQEARNSDGQKSKSSERSTRSAEEEEDEYGGSTDEEEAPSSPTSTLPSRSSRPDS
PLDDSLRDITDVAPSRKRRFRHLGQDPAGKRPVAEARQRERTGPPAGSSKLQTPQRSADA
AAAEDLFEDF
NT seq
1653 nt
NT seq
+upstream
nt +downstream
nt
atgactcggtgggcgagagccaacaatgtccacagaaacaaaccagcagaggccacgccc
tggagtcagctgagggggcggggctcagggggtggggctcggggcgatcctctgaggaag
actcaggccggcggctcctcatcaaagaatcggaagaagaaggactacaccaacgaggat
gtgaacggattcctggagtatctgaaggagagcggagctcctccccctgcagggaggccg
gagcgtcagcaggaggagctggtgcaggaggtggaggaggccctgaagagagacacgagg
agggagaaccgcagagtgaagaggcagaacgacaagaagaacaaaatgctctgcttcaac
tgcaggaagcccggccacggcctggccgactgccccgaggccgacgccgaccgggacatg
ggccggggcatctgctaccgctgcggctccaccgagcacgaaatccacaagtgcagggcc
aaggtggacccggctctgggtgattatccctacgcaaagtgcttcatctgcgggcagacc
ggacacctgtcgcgctcctgtcccgacaaccccaaagggctttacgcacaaggaggttcc
tgtcgtctctgtgggtctgtggaacatttccagaaggactgtccggagcatcaagctgcc
aggatgaacacggccgtgcgggagatccgcgtctcatcccaacctggctcctcctacttc
ctgcgtgtggactggaaggggcggagcttagcttcaggcttccgggtgctgctcactgat
ggacaggatgcctggagaggagaagtgggcgaggccaccatgagcggcgaggcagcggag
ctggagatgaccatggagaagtacatccaggacctggagcgggcgctgactggagcagga
gaaccggactcctacagcttcagtctgagtccagaagcggcgagcggcggcgtgacgctg
acctacgagaagatgcagaaggagatctcgttccgactgggctccgttctgctggaggcg
gagcttcggccggcggaggcgctgaggcagctgctgctgcacagcctgcagagaggaaac
gggctccagaaccagaaccagaagctgcaggaggagaaccagcggctgaggggggagcag
cagcggatctgtgcagagctgcagcgctacgctggcgggaaggaggcgctggaggcggag
ctgtactctcgcttcgtcctggtccttaacgagaagaaagcaaagatccgacatctgcag
gacggcctctccaagctgcaggaagccaggaactcagacggacagaaaagcaaaagttct
gagaggtcgacccgatcagctgaggaagaggaggacgaatacggaggcagcaccgatgaa
gaagaagcgccgtcgtctccaacttcaactctaccatccaggagttcccgccctgacagc
ccattggacgacagcctgcgtgacatcacagacgtggccccgagccgcaaacgccgcttc
cggcacctcgggcaggatccggcgggaaaacggccggtcgcggaggcacggcagagggag
aggacgggcccccctgctggatccagtaagctgcagaccccccagcgctctgcagacgct
gcagcagccgaggatctgttcgaggacttctga
DBGET
integrated database retrieval system
