Oryzias melastigma (Indian medaka): 112162952
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Entry
112162952 CDS
T07439
Symbol
ttc28
Name
(RefSeq) tetratricopeptide repeat protein 28 isoform X1
KO
K24936
tetratricopeptide repeat protein 28
Organism
oml
Oryzias melastigma (Indian medaka)
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
oml03037
]
112162952 (ttc28)
Cilium and associated proteins [BR:
oml03037
]
Motile cilia and associated proteins
Other motile cilia associated proteins
112162952 (ttc28)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_12
TPR_7
TPR_1
CHAT
TPR_8
TPR_2
TPR_10
TPR_MalT
TPR_11
TPR_NPHP3
Rapsyn_N
RPN7
TPR_16
TPR_17
TPR_6
TPR_9
TPR_14
PUB
Motif
Other DBs
NCBI-GeneID:
112162952
NCBI-ProteinID:
XP_024154731
LinkDB
All DBs
Position
LG12:complement(808027..891968)
Genome browser
AA seq
2431 aa
AA seq
DB search
MEKPRTRREKFSFFGSRSTNRTIHTSSSSSSPPVPSVPVSGSGAASLSKAEFLERVRRSN
QACQQGDFGLAVRLYSEALNADPQNCILYSNRSAAYLRLGQYGTALDDAVKARLINPKWP
KAYFRQGVALQYLGRHADALAAFASGLAQDPKSLQLLVGMVEAAMKSPLGDSLDSTYQQL
QKMKLDKSPFVVVSVIGQELLTHGFPGASVVVLEAGLKIGTCSLKLRGSVFSALSSAYWS
LGNVEKSMAYMQQDLEVTKALGDQPGECRAHGNLGSAFFSKSNYREALANHRNQLVLAMK
LKNREAASGALSSLGHVYTAIGDYPNALASHKQCVLLAQQDRCRLTEARQLGNMGAVYTA
LGDFSSAVECHEQHLDIAKSLEDRREEARAYSNLGSAYHSERDFDKAVSYHSRVLELGQE
LADRAVQMRAYAGLGHAARCMQDLERAQQYHQKQLEIAEELQDRAAQGRASSNLGIIHQM
KGEYKAALKLHKAHLSLAQELGDYAAQGRAYGNMGNAFHALGLQEQAVQYHRQELQISLE
VNDRPSQASTHGNLAVAFQALGAHDRALQHYLQHLSISRELRDSQSEARALVNLGNFHSC
RGEYAQALPYFQQFLALAPGLQDLEGEGKVCHNLGYAHYCLGQYRDAVRYYEQDLALAKD
LQDKLAQAKAYCNLGLAYKALGEFSRAEECQRSLLAAAQALDHTQAVFRAFGNLGDVCVC
RGDLPGAVKFYQQQLTLAQKAGDRRMEADAFSALGSAHRLLRQLDAALSLHSQELTVRKD
LGDQQGECRALGHLAAVHMGLGDYATAFQCYETQLGLAQGLRDPSLEAQVHGNMGITKMN
MGVFEEAIGYFEQQLAMLQQLSGAEGMLDRGRAFGNLADCYDALGDFEEAVQNYEKYLTV
AQSLNRVQDQEKAYRGLGRAHRSTGSLQQALVCLEKRLVVAHELGGDGGGKAQAYGELGT
LHSQLGNYEQALSCLEHQLNIARSAGDKPLEAEASDALGGVYRLMGDNETALQWHQRALD
IAEQTGCVRSQARACGNLGLTYEALGKYERAVVFQEQHLSVAAQTNDLMAKTLAYGSLGR
THHALLNYAQAVMYLQEGLRLAEQLGLKEDEAKIRHGLGLSLWAGGNLEEAQHQLYRASA
LFEMIRNETQHNVDYKLSLFDLQTSSYQALQRVLVSLGRHDEALAVAERGRTRAFADLLV
ERQKGSQQTAKADPYVPVTVERLLEAVNGQKAVVLYFSMAGGFLYSWLISPGAGIVKFNE
VDLREGGAEGSELQECGGSPPCSLEQYIYNAREALGVDSPRSRVCETESEAGDLQEQQEE
DLNQQLSSSTDPTGYLRMVSRNNRLNRSCQSVTSLFSAAVSPVKDGPPPPARWSGAAKPA
LRALYDLLIAPMEGGLMHGSGPVGRNRQLVLVLEGELYLVPFALLKGSASNEYLCERFGL
VSVPSLATLAAAAKAPPPRRAAPPADGGSLAAVVGAPRLPPSIMGRWLWGPLPSAQEEAL
WLGEQLGCRPLTGANATKERVLAALSQAECVHVATHISWKLAALVLAPAQDGAQEGGADQ
NRTGSFLRRRGGLRGAEEGSDGEEGLCDTPPLQDFLLTAADVLDLNLTVKLLVLRSFPES
SGRITADGVVGLTRAFLAAGVQCVCVSLWPVSGAASKLFTHSFYTALLGGAKASAALTDA
MKALQSSKQFSHPSNWAGYTLIGSDVKLNSPMSVVGQALAEILQHPDRARDALRVLLHLV
EKSLQRIHGGHCNPMYTSQHSVENKVGGVPGWQALLAAVGFRLDVSCAGLPAAVFFPTSD
PGDRLQQCSSTLQSLLGLRPAALQALCKLVSAAEAGGQLVQKAVKHVAGMLHQVLVQLQS
GDKEQDFPLAPIQVSISVQLWRLPGCHEFLAALGFDLCEVGQEEVVLKTGKQASRRSLHF
ALQSLLALFDSTELPKRLSMDSSSSLESLSSSQSTSQPHSLPPSLSCYPPQPPFAPPGCP
DSLSSDAISVYSLSSLASSLSFLSRPEPAGSDIISQHPHQPDQNYGGARASPLRPGGRAR
GRLSSQGGEEEYEGFSIICSEPLRRGGRDLHPPPTGQRPGRGGGGRGSEGGRPLTVSSKG
SISTPTSPLKSAPLPFTAPNSPRPLEGLPPQRSGKGKVSSSESDQSSTETDSTVKSQERA
GPVGQLDPQELAQKILEETQSHMQAVESLQKAGLRGGAVRGAEGRGDACHMSRSTPTTPT
FSPRGGAFQPSETSAFSRPPSRASLKAASSPLSVCSRRSRLSASTPPPAPPKPPSRSSSL
QRLGSSSPADASACVGERLRPSPAHSAPSPPLSCSSAVSTPLSTPEPKPDFRFKETQSFW
VSQTQEERSPPTVLRGRSKKMSAVQNDVLGLLNLSQRHGADRPNGPQAPEAKPPLPPPSA
PPTNSKGGARRSSGSGFKFLKPGHFFPSSKC
NT seq
7296 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaacccagaacgaggagagagaagttctccttcttcggatctcgctccacaaac
agaaccatccacacctcctcttcgtcctcctctcctcccgtcccgtctgttccggtgtct
ggttctggtgccgccagcctgagcaaagcggagttcttggagcgtgtgcggcgcagtaac
caggcctgccagcagggggacttcggcctggcggtccgtctgtactcggaggcgctgaac
gccgacccgcagaactgcatcctgtacagcaaccgctccgccgcgtacctgaggctgggc
cagtacggcacggcgctggacgacgccgtcaaggcgcggctcatcaaccccaagtggcca
aaggcttattttcgtcagggggtcgccttgcagtacctgggtcgccatgccgacgccctg
gcggcgttcgcctcgggcctggctcaggaccccaagagcctccagctgctggtggggatg
gtggaggcggccatgaagtcgccgctcggagactctcttgactccacctaccagcagctg
cagaagatgaagctggacaagagtccgttcgtggtcgtgtccgtcatcggtcaggagctg
ctgacccacggcttccccggagcgtcggtcgtggtcctggaggcggggctgaagatcggc
acgtgctcactaaagctgcgggggtccgtgttctccgctctgagctcggcgtactggtct
ctaggcaacgtggagaagagcatggcctacatgcagcaggacctggaggtgaccaaggcc
ttaggggaccagccaggtgaatgccgggctcacgggaacctcggatctgctttcttctcc
aagagtaactatcgagaagctctggccaatcacaggaaccagctggttctggccatgaag
ctgaagaacagagaggctgcgtccggcgccctcagcagtctgggtcacgtgtacacggcc
atcggggactatcccaacgcgctggccagccataagcagtgtgtgctgttggcacagcag
gaccggtgccggctaacggaggcccggcagctgggaaacatgggagctgtttacaccgct
ctgggagacttcagcagcgccgtggagtgtcatgagcagcacttagacatcgctaagagt
ctggaagaccgccgcgaggaggcgcgggcgtacagcaacctgggcagcgcctaccactct
gagcgggacttcgacaaggccgtgtcctaccacagcagagtgctggagctggggcaggag
ctggccgaccgggccgtccagatgagggcgtacgccggcctggggcacgccgcgcggtgc
atgcaggacctggagcgggcccagcagtaccaccagaagcagctggagatcgccgaggag
ctgcaggacagagcggctcagggccgggcctcgtccaacctggggatcatccatcagatg
aagggcgagtacaaagcggcgctgaagctccacaaagcccacctgtccttggctcaggag
ctgggagactacgccgctcaggggcgggcctacgggaacatggggaacgccttccacgct
ctgggcctgcaggagcaggcggtgcagtaccaccggcaggagctgcagatctccttagag
gtgaacgaccggccgtcacaggcctccacgcacgggaacctggccgtggccttccaggcg
ctaggcgctcacgaccgcgctctgcagcactacctccaacacctgagcatctcccgtgag
ctgcgggactcccagagtgaagcccgggctttagtgaacctggggaacttccacagctgc
aggggggagtacgcacaggcgctgccctacttccagcagttcctggctctggctccaggc
ctgcaggacctggaaggagaagggaaggtttgtcacaacctgggctacgctcactactgc
ctgggacagtaccgggacgccgtcaggtactatgagcaggacttggctctggctaaagac
cttcaggacaaactagcccaggccaaagcctactgtaacctgggtctggcctacaaggct
ctgggagagttcagcagagccgaggagtgtcagcggtcgctgctggccgcggcgcaggcc
ctggaccacacccaggcggttttccgagcctttgggaacctcggggacgtttgtgtttgt
cggggcgatctgccgggagccgtgaagttttaccagcagcagctgactctggctcagaaa
gccggcgatcggaggatggaggccgacgccttctcagcgctgggatcagctcacaggctc
ctccgtcagctggacgcggccttgtccctccacagccaggagctgactgtccggaaggat
ttgggcgatcagcagggcgagtgccgggccctcggtcacctggcggcggtccacatgggc
ctgggggactacgccacggccttccagtgctacgagacccagctgggcctggcgcaggga
ctcagggacccgtcgctggaggcccaggtccacgggaacatggggatcaccaagatgaac
atgggcgtcttcgaggaagccatcgggtatttcgagcagcagctggccatgctgcagcag
ctgagcggggccgagggcatgctagacagggggcgggccttcgggaacctggccgactgc
tacgacgctctgggagacttcgaggaggccgtccagaactacgagaagtacctgacggtg
gcccagagcctcaaccgcgtccaagaccaggagaaggcctacaggggtctcgggcgagct
cacaggtccacgggcagcctgcagcaggcgctggtgtgcctggagaagcggctggtggtg
gcccacgagctcgggggggacggaggagggaaggcccaggcgtacggggagctggggacc
ctccacagccagctggggaactacgagcaggccctgtcctgtctggagcatcagctcaac
atcgcacgctccgccggggataagcctctggaagcggaggccagcgacgctctgggagga
gtctaccggctgatgggcgacaacgagacggctctgcagtggcaccagcgggcgctggac
atcgccgagcagacgggctgcgtgaggagccaggcgcgcgcctgcgggaacctgggcctg
acctacgaggctctggggaagtacgagcgagccgtggtcttccaggagcagcacctgagc
gtggcggcgcagaccaacgacctgatggccaaaactctggcctacggcagcctgggcagg
acacaccacgccctgctgaactacgctcaggcggtcatgtacctgcaggaaggactccgt
ctggcggagcagctgggcctgaaagaggacgaggcgaagatccggcacggcctcggcctc
tctctgtgggccggcgggaacctggaggaggctcagcatcagttgtacagagcgtctgct
ctgtttgagatgattcggaatgagactcagcacaacgtggactacaagctctctctgttt
gacctgcaaaccagctcttaccaggctctccagagggtcctcgtcagcctcggtcgtcac
gacgaggcgctggccgtcgccgagcgaggccgaacacgagccttcgccgacctgctggtc
gaacggcagaaaggaagtcagcagacagccaaagccgacccgtacgtgccggtgacggtg
gagcgcctcctggaggcggtgaacggtcagaaggccgtggtcctctacttctccatggct
ggaggcttcctgtacagctggctgatctctccaggcgcagggatcgtgaagttcaacgag
gtcgacctgagagaaggtggagctgaaggctctgagctgcaggagtgtggggggagcccg
ccgtgctctctggagcagtacatctacaacgctcgggaggctctgggggtggacagcccc
cgcagcagagtctgtgagacggagagtgaagcaggagatctgcaggagcagcaggaggag
gatctgaaccagcagctcagctcctccaccgaccccaccggctacctgcgcatggtgtcc
cggaacaaccggctcaacaggagctgtcagagcgtgacgagtctcttcagcgccgccgtt
tctcctgtgaaggacggacctcctcctccggcccgatggagcggcgccgccaaaccggcg
ctgcgagcgctctacgacctgctgatcgcgccgatggaggggggcctgatgcacggcagc
gggccggtgggccggaaccggcagctggttctggttctggagggagagctgtacctggtc
ccgttcgccttgctcaaaggcagcgcctccaacgagtacctgtgcgagcgcttcggcctc
gtctccgtcccgtctctggccaccctggcggcggcggcgaaggctccgcctcctcgccgc
gccgcccccccagcagacggaggctcgctggcagcggtggtgggggccccccggctgccc
ccgagcatcatgggccgctggctgtgggggcccctcccctccgcgcaggaggaggcgctt
tggctgggggagcagctggggtgccgccccctgaccggcgccaacgccaccaaggaacgc
gtcttggcggcgctgagccaggccgagtgcgttcacgtcgccacgcacatttcgtggaag
ctcgccgcgctggtcctcgctcccgctcaggacggcgcccaggaggggggggcggatcag
aaccggaccggctcgttcctgaggaggcgcggcgggctcagaggagcggaggaggggagt
gacggcgaggagggcctgtgtgacacgcccccccttcaggacttcctcctcaccgccgca
gacgttctggacctgaacctgacggtcaaactgctggtcctcaggtcgttcccggagtcc
agcggcaggatcacggccgacggcgtggtgggtctgacccgggccttcctggcggccgga
gtgcagtgcgtgtgcgtctcgctgtggcccgtctccggcgccgcctccaagctgttcacg
cacagcttctacacggccttactgggcggggccaaagccagcgccgcgctgaccgacgcc
atgaaggcgctgcagagcagcaagcagttctcacacccgtccaactgggccggttacacg
ctgatcggcagcgatgtgaagctcaacagtcccatgtcggtggtgggtcaggctctggcc
gagatcctgcagcatccggaccgagccagagacgctctgagggttctgctgcacctggtg
gagaagtctctgcagcggatccacggcggacactgtaaccccatgtacacgtcgcagcac
agcgtggagaacaaggtcgggggggtccccgggtggcaggccctcctcgccgctgtgggg
ttccggttggacgtctcctgtgccggactccccgccgccgtcttcttcccgacgtcggac
cctggagaccggctgcagcagtgcagctccacgctgcagtctctgctcggtctgaggccg
gccgctctgcaggcgctctgtaagctggtgtctgcggctgaagctggagggcagctggtc
cagaaggcggttaaacatgtggcaggaatgctccaccaggttctggttcagctgcagtcc
ggagacaaagagcaggacttcccgctggctcccatccaggtgtccatcagcgtgcagctc
tggaggctgccgggctgccacgagttcctggctgctctggggtttgacctgtgtgaggtc
ggacaggaggaggtggtgctgaagacggggaagcaggccagtaggaggagcctgcacttc
gctctgcagtcgctgctcgctctgttcgattccacggagcttcccaagcgtctgagcatg
gatagctcctcctccctggagtccctgtcctcatcccagtccacctcccagccacactcc
ttgcccccctcgctctcctgttacccccctcagccgccatttgcccccccgggttgcccc
gacagcctctctagtgacgccatatccgtctacagcctcagctccctggcgtcctccctc
agcttcctgtcccgccccgagcctgcaggaagtgacatcatcagccagcacccgcatcag
ccagaccaaaactatgggggggcccgcgcctccccccttcgccccggcggccgggcgagg
ggtcgactgagcagtcaggggggggaggaggagtacgagggcttctccatcatctgcagc
gagccgctgcggcgaggagggcgggacctccaccctccgcccacagggcaacgacccggg
aggggcgggggtgggagggggtctgagggggggcgtcctctgactgtctcctccaagggg
agcatcagcacccccacgtccccgctgaaatctgccccgctgccctttacggcgccaaac
agcccccgccccctggaaggcttgccgcctcagcgcagcgggaaaggaaaggtcagcagc
tccgagtcggaccagtccagcaccgagacggacagcacggtcaagtcccaggagagggcg
gggcctgtgggtcagctggacccgcaggagctggcccagaagatcctggaggagacgcag
agccacatgcaggcggtggagagcctgcagaaggccggcctgagaggaggcgccgtgagg
ggcgccgaggggcggggtgacgcctgccacatgtcccggtccacgcccaccacccccacc
ttcagccccagaggaggagcgtttcagccctcggagacgagcgccttcagccgaccgccc
agcagggcgagcctgaaggcggcgtcctctcctctgtccgtctgcagccgccggtcgcgg
ctctccgcctccacgccgcctcctgccccgcccaaaccgccgtcccgctcctcgtctctg
cagcggctgggcagcagcagtcctgctgacgcgtctgcgtgtgtgggtgagaggctccgc
ccctctcctgcccacagcgcaccgtctccgcccctctcctgctcctccgccgtgtccacc
cccctcagcacccccgaaccgaaaccggacttcagattcaaggagacccagagcttctgg
gtcagccagacccaggaggagcgcagcccccccaccgtactgcgggggcggagcaagaag
atgagcgcggtccagaacgacgttctgggtctgctgaatctgtcgcagagacacggcgcc
gacagacccaacggtccccaggcacctgaggccaaaccaccgctacctcccccctcggcc
ccgcccacaaactctaagggaggggccagacgttcctccgggagcggcttcaagttcctg
aagccgggtcacttcttcccgtcctccaagtgctga
DBGET
integrated database retrieval system
