Oryzias melastigma (Indian medaka): 112162969
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Entry
112162969 CDS
T07439
Symbol
rapgef1b
Name
(RefSeq) rap guanine nucleotide exchange factor 1b isoform X1
KO
K06277
Rap guanine nucleotide exchange factor 1
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml04510
Focal adhesion
oml04910
Insulin signaling pathway
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
112162969 (rapgef1b)
09150 Organismal Systems
09152 Endocrine system
04910 Insulin signaling pathway
112162969 (rapgef1b)
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Gene cluster
GFIT
Motif
Pfam:
RasGEF
RasGEF_N
Motif
Other DBs
NCBI-GeneID:
112162969
NCBI-ProteinID:
XP_024154766
Ensembl:
ENSOMEG00000011461
UniProt:
A0A3B3DE44
LinkDB
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Position
LG12:7842798..7887480
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AA seq
1203 aa
AA seq
DB search
MSRKIESKHDSQRSHLSTITMILKDKFHSPKIKRTPSKKGKQAQPEPAAKSAEKPANKKV
SRLEEHEKEVVSALRYFKAIVDKMMVEKKVLEMLPGSASKVLEAILPLVQVEAWIQHSTA
LTSCHSRVYQSLGNLIRWADQVMLDGIDLEDKENVAAVTGVIKAVLDGVKELVKLTIEKQ
EQPSPTTPNKPAPPVAPAESVSSETHLIDREQEVSKKAAPAASPAESAPELADEDVAPPK
PPLPEAKMAELRAQLSADAGQRRPSQKENPPPALPPKKRQSAPSPTPVAVVAPMTRGSSL
PCNDHRPGYEQEFHQRRFSGGSHSYGGDSPRLSPCSSMGKLSKSDEQLSSMEHDSGQCSR
NTSCETLDNTESYDPDYDFLHQDLSAGDNLPPIPVGGCLSPLPESHSESSSPVPGQHPPH
PRFSAPPPQQSEYWTPQPNHTNPLQSSRISAPPALPLKKRRSTQTSSFSSDGGTRVLYER
YPSQYDNLSEEELHPTPPFPLFTPISPMPQTNGGVFVSQYVASENADVPASPPPLPEKKS
KHILQYMQFVEDYSEPQPSVFYQMPQSESIYEQRNKRFQEVCGFNDSFSSTDSVHESVLP
PALPPKQRQLASHSSSPSSSSSSSLSCHLQPSVAAMEEAGSGLGLSMSVSNSYLNGQASL
ATPTSLDQVALTNATVLDGSGGGPSGSLAGSVGSVAVCLPSESSLTDSLHTSASESANDE
GGEGEYVNLYSSSQANGELPLSLRETIAADDALQDPTPQMASSNSKEALDKERRQKTSEL
AGSDEEDVDELSLIDHKEIMSRITLKQENDDGPDVRAGSGDILLVHATETDRKDLVLYCE
AFLTTYRTFITPEDLIKKLHYRYTTFCHSPDTFKKRVSKNTFFVLVRVVDELCLVELTED
ILKQLMDLVFTLVCNGELSLARVLRKNILDKVEQRKLLRYTNSLKPLAARGVSARPGTLH
DFRSHEIADQLTLLDAELFYKIEIPEVLLWAKEQNEEKSPNLTQFTEHFNNMSYWVRSLI
IQQEKAQDREKLLLKFIKIMKHLRKLNNFNSYLAILSALDSAPIRRLEWQKQTSEGLEEY
CTLIDSSSSFRAYRAALAEVEPPCIPYLGLILQDLTFVHLGNPDLIDGKVNFSKRWQQFN
ILDSMRRFQQVHYELKRNEDIISFFNDFSDHLAEEALWELSLKIKPRNITRRRTEREEKN
LGL
NT seq
3612 nt
NT seq
+upstream
nt +downstream
nt
atgtcgagaaaaattgaaagcaagcacgactctcaacgatcccatctgtccaccatcacc
atgatactgaaggacaagttccactctcccaagatcaaaaggactccttccaagaaggga
aagcaggcgcagcccgagccagcggccaagagtgctgaaaaacctgctaacaagaaagtt
agccggctagaagagcacgagaaggaggtggtcagtgcactgcgctacttcaaggcaatt
gtggacaaaatgatggtggagaagaaggtactggagatgctcccaggctcagccagcaaa
gtgctggaagcaattctacctctggttcaggtagaggcatggatacagcacagcacggcg
ctgacttcctgccacagtcgcgtctaccagagtttgggcaacctcatccgttgggctgac
caggtcatgctggatggtatcgacttggaggacaaggagaatgtggcagctgtgactggt
gtcatcaaggcagtgctggatggagtgaaggagctggtgaagctgaccatagagaaacag
gagcagccatcgcccaccacccctaacaaaccggcaccacctgtcgctccagcggagagt
gtgtcatcggagacgcatctaatagatcgggagcaggaagtgtcaaagaaggccgcccca
gctgcttctcctgcagagtctgcccctgaactagcagatgaggacgtggcccctcccaaa
cccccgcttccagaggccaaaatggctgagcttagagcgcagttgagtgctgacgctggc
caaaggagaccctctcagaaggagaacccgcccccagctcttcctcccaagaagcgccag
tcggccccttcgcccacacccgtggcagtggtcgctccaatgacccgcggctccagcttg
ccgtgtaacgaccacagaccggggtacgagcaggagttccaccagaggcgtttctccggg
gggagccattcctacggtggggactctccccgtctgtctccgtgcagcagtatgggaaaa
ctcagcaagtctgacgaacagctgtcctccatggagcatgacagtgggcagtgctctcga
aacaccagctgtgagacactagataacacggagagctatgacccggattatgactttctt
caccaggacttgtctgccggggataatctccctccaatcccagtagggggctgcctcagc
cccctgcccgagtctcacagcgaatcctcgtcccctgttcccggacagcatcctccccat
ccccgctttagcgctcctccaccccagcagtctgaatattggaccccccagccaaatcac
actaatcccctccagtcttcgcggatcagcgctccccccgccctgcccttgaagaagcgc
cgcagcacccaaacgtcgtccttctcctccgacggggggaccagggtgctatacgagcgc
tatccgtctcagtacgacaacctgtcggaggaagagctccaccccactcccccgttcccc
cttttcacccccatctcgcccatgccccagacaaacgggggcgtgttcgtttcccagtac
gttgccagcgaaaatgcagacgttcccgccagcccaccgccgctgccggagaagaaaagc
aagcacattcttcagtacatgcagtttgtggaggactactcggagccgcagccttcggtt
ttctaccagatgcctcagagtgaaagcatatacgagcagcgcaacaagcgtttccaggag
gtctgtggcttcaatgactctttcagcagcaccgactcggttcacgagtctgtgctgccc
ccagccctgccaccgaaacaaagacaactggcctcccactcctcctctccttcttcctcc
tcctcctcttcgctctcctgccacctccagccgtctgtggcggccatggaggaggcaggc
tctgggctgggcctcagcatgtccgtctctaactcctacctgaacggccaggcgtctttg
gccacacccacgagcttggaccaggttgccttgaccaatgccaccgttctggatggcagc
gggggcgggcccagcggttccctggctggctcagtgggctctgtggctgtctgtcttccc
tctgagtcttctctcactgactctctccacacctcagcgagcgagagcgcgaatgacgag
ggcggggagggggagtatgtcaacttgtactcgtcaagccaggccaatggggagctgcct
ctctccctcagagaaacgattgcagctgatgatgctcttcaagaccccacccctcagatg
gcatccagcaacagcaaagaggctctggacaaagaaaggaggcaaaagacttcagagttg
gctggaagcgacgaggaagacgtggatgagctctccctcatagatcacaaggagatcatg
agcaggataacactaaaacaagaaaatgacgacggccctgacgtccgcgccggatcggga
gacatcctgctggtccacgctacagaaacggaccgtaaagatctggttttgtactgcgag
gcctttctcactacgtataggacttttataaccccagaagaccttattaagaagctacac
tacagatatacaacattttgccacagtccagacaccttcaagaagcgcgtcagcaagaac
accttctttgtcctggttcgagtggtggacgagctgtgcttggtggagctgacggaggac
atcttgaagcagctcatggacctggtgttcacgctggtgtgtaatggcgagctcagcctc
gcccgcgtgcttcgcaagaacatcctggataaggtggagcaaaggaagctgctacgctac
actaactctcttaagcccctggctgccagaggagtctctgcaaggccgggaactcttcat
gacttccgcagtcacgaaatcgctgatcaactcactcttcttgatgctgaacttttctac
aaaattgagattccggaggttctgctttgggcaaaagagcaaaatgaggagaagagtccc
aacctgactcagttcacagagcactttaacaacatgagttattgggtccgatctctgata
attcagcaggagaaagcccaagacagagagaagctgctcctcaagttcataaagattatg
aagcacttaagaaagttgaataacttcaactcctacttggcaatactgtccgctctggac
tcggcccccatcaggaggctggagtggcagaaacagacctcagagggtttggaggagtac
tgcactctgatcgacagctcctcctccttcagggcgtacagggctgctctggccgaggtg
gagccgccgtgcatcccgtacttaggtctcattcttcaagacctgacatttgtacacctg
gggaaccccgacctgatcgatgggaaggtcaacttctccaaacgttggcagcagttcaac
attctggacagcatgaggcgcttccagcaagtgcattatgagttaaagcgcaacgaagac
atcatctctttcttcaacgacttcagcgaccacctggctgaggaggctctgtgggaactg
tcattaaagataaagcccaggaacattaccaggcgcaggacggagcgcgaggagaagaac
ttgggcctgtga
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