Oryzias melastigma (Indian medaka): 112163017 Help Entry 112163017         CDS       T07439                                  Symbol tnpo1 Name (RefSeq) transportin-1 isoform X1   KO K18752   transportin-1 Organism oml  Oryzias melastigma (Indian medaka) Pathway oml03013   Nucleocytoplasmic transport Brite KEGG Orthology (KO) [BR:oml00001]  09120 Genetic Information Processing   09122 Translation    03013 Nucleocytoplasmic transport     112163017 (tnpo1)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:oml03019]     112163017 (tnpo1)    03009 Ribosome biogenesis [BR:oml03009]     112163017 (tnpo1) Messenger RNA biogenesis [BR:oml03019]  Eukaryotic type   mRNA surveillance and transport factors    mRNA cycle factors     Common to processing body (P body) and stress granule      112163017 (tnpo1) Ribosome biogenesis [BR:oml03009]  Eukaryotic type   Pre-40S particles    Export and cytoplasmic maturation factors     112163017 (tnpo1)   Pre-60S particles     112163017 (tnpo1) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  HEAT_EZ HEAT TPR_IMB1 HEAT_GCN1 HEAT_2 TOR1L1_N Vac14_Fab1_bd Cnd1 IBN_N TPR_IPO5 Arm HEAT_EF3_N HEAT_MROH2B_C TPR_DNAAF5 PDS5 Adaptin_N CEP104-like_TOG MMS19_C HEAT_Maestro Ltn1_1st HEAT_GCN1_C_2 UNC45-central TPR_TTI1_C Dopey_N XMAP215_CLASP_TOG HEAT_DAAF5 VPS15-like_hel DUF3689 Motif Other DBs NCBI-GeneID:  112163017 NCBI-ProteinID:  XP_024154864 Ensembl:  ENSOMEG00000014567 LinkDB All DBs Position LG12:5198284..5229242 Genome browser AA seq 916 aa AA seqDB search MSVYKHRHMHRYAVLLYHRIKVLTLLTPDENNSFGIILVLQTGIVIDLLCVRLSSLKHFL QRLEQLNQYPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHYHNFPNGVSDFIKSE CLQNIGDSSPLIRATVGILITTIASKGELQNWPELLPNLCLLLDSEDYNTCEGAFGALQK ICEDSAEILDSDMLDRPLNVMIPKFLQFFTHRSPKIRSHAIACVNQFIISRTQALMLHID PFIENLFALATDDEPEVRKNVCRALVMLLEVRLDRLLPHMHNIIEYMLQRTQDQDENVAL EACEFWLTLAEQPVCKEVLCGHLSQLIPVLVNGMKYSEIDIILLKGDIEEDEAIPDNEQD IRPRFHRSRTVAQQHEGDGIEEEDDDDDELDDDDAISDWNLRKCSAAALDVLANVFRDDL LVHILPLLKELLFHPEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALV RSITCWTLSRYAHWVVSQPPDIYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTE LVPYLAFILDTLVYAFNKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWN QLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLHQSQPDQYE APDKDFMIVALDLLSGLAEGLGGTIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDL TKACFQHVKPCIGDFMPILGTNLNPELISVCNNATWAIGEISIQMGPEMQPYVAMVLHQL VEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAF RGICTMISVNPGGVVQDFIFFCDAVASWVNPKEDLREMFYKILHGFKNQVGEENWRRFAD QFPMPLKERLAAFYGV NT seq 2751 nt NT seq  +upstreamnt  +downstreamnt atgagcgtttacaaacacagacacatgcatcgttatgctgttctattataccaccgcatt aaagtattaacgctgctcactccagatgagaataattccttcggcatcattttggtcctg caaactgggattgtaatcgacttgctgtgtgtgcggttgtcttcccttaagcattttctg cagagactggagcagctgaatcagtatccagacttcaacaactatttgatattcgtcctg acaaagttgaaatcggaagacgagccaacccgatccttgagcggactgattctgaagaac aatgtcaaggctcactatcataacttcccaaacggcgtgtctgatttcatcaagagcgag tgcctccaaaacatcggggattcttctcccctcattcgggccacagtcggtatccttatc accacaattgcctccaaaggagagctgcaaaactggcctgagctgctgccaaatctttgc cttctgctggactctgaggactacaacacatgtgagggagcattcggagcgctgcagaag atctgcgaggattctgctgagatcctggacagtgacatgctggaccgtccgcttaatgtc atgatccccaagtttctgcagttttttacacacaggagtcctaaaattaggtctcacgcc atcgcctgtgtcaaccagtttatcatcagcaggactcaggcgctgatgcttcacatcgac cctttcatcgagaacctgtttgctctggcgacggacgacgagccggaggtgaggaagaac gtgtgcagagctctggtcatgctgttggaggtccgtctggaccgcctcctgccgcacatg cacaacatcatcgagtacatgcttcagaggactcaggaccaagacgagaacgtcgcgctg gaggcctgcgagttctggcttactctcgcggagcagcctgtgtgcaaggaggttctgtgc ggtcacctctctcagctcattccagtgcttgtcaacggtatgaagtactcagagattgac atcatcctgctcaagggcgacattgaggaggatgaagccattccagacaacgagcaagac atcagaccccgcttccaccgctcccgcacggttgcccagcaacacgagggtgatgggatt gaagaagaggatgatgatgatgacgagctggatgatgatgacgccatctctgactggaac ctgcgaaaatgctcggcggcagcgctggacgtgttggccaacgtcttcagggacgatctc ctggtgcacatcctccctctgctcaaagagctgcttttccacccagagtgggtagtcaaa gagtctggcatcttagtgctgggggctatagctgaaggctgcatgcagggcatgatccca tatttgcctgagctcatcccacatctcatccagtgcttgtccgacaagaaggcgctggtg cgatccatcacctgctggaccctgagccgctacgcccactgggtggtcagccagccgccg gacatctacctgaagcctttaatgacggagctgctcaagcggattctagacagcaacaag cgggttcaggaggccgcctgcagtgcctttgccaccctggaggaggaggcttgcacagaa ctggtgccgtacctggcgttcatcctggacaccctggtgtatgccttcaacaagtaccaa cacaaaaacctgctcatcctttacgacgccatcggaacgctggcagactcggtgggacac cacctcaacaaaccagagtacatccagatgttgatgccaccattgatccaaaagtggaat cagcttaaagatgaagacaaagatctttttcctctattagaatgtctgtcctctgtagcc acggcgctacagagcggcttcctgccatattgtgagcccgtgtaccaacgctgtgtcaac ctggtccagaaaactctggctcaggccatgcttcatcagtcacagccagaccagtacgag gctcctgacaaagacttcatgatcgtggctttggatctcctcagtggactggccgaaggt ttggggggcaccatcgagcagctggttgctcgtagcaacatcctcaccctcatgtaccag tgcatgcaggacaaaatgccagaagtgcggcagagttctttcgcgttacttggagatctg actaaggcttgtttccagcatgtcaaaccatgcatcggtgatttcatgccaatattggga actaacttaaaccctgagttaatatcagtgtgcaacaatgcaacctgggcaatcggagag atatctatacaaatggggcctgaaatgcagccatacgttgccatggtgctgcaccagctg gtggagatcataaacaggcccaacactccaaagactcttctggaaaacacagcaataaca attggtcgtcttggttacgtttgtcctcaagaggtggctcccatgctacagcagtttata agaccctggtgcacctctctgcgaaatataagagacaatgaggagaaagactccgccttc agaggaatttgcaccatgatcagtgtaaatccaggaggcgtagtgcaggattttatattc ttctgtgatgcagtggcctcctgggttaatccaaaagaggatctgagagaaatgttctac aagatccttcatggctttaagaaccaggtgggagaagagaattggaggcgtttcgcggat cagttcccgatgccactgaaggaacgcttggcagccttttatggggtgtag

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