Oryzias melastigma (Indian medaka): 112163217
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Entry
112163217 CDS
T07439
Symbol
pdlim5b
Name
(RefSeq) PDZ and LIM domain protein 5b
KO
K19867
PDZ and LIM domain protein 5/6/7
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
112163217 (pdlim5b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
oml04990
]
112163217 (pdlim5b)
Domain-containing proteins not elsewhere classified [BR:
oml04990
]
LIM domain-containing proteins
PDZ-LIM family proteins
112163217 (pdlim5b)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
LIM
PDZ
DUF4749
PDZ_6
LIM_FHL2-3_N
PDZ_2
DUF3854
Motif
Other DBs
NCBI-GeneID:
112163217
NCBI-ProteinID:
XP_024155266
Ensembl:
ENSOMEG00000000058
UniProt:
A0A3B3D0A9
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Position
LG12:complement(13099862..13130271)
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AA seq
610 aa
AA seq
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MSSNYSVSLAGPAPWGFRLQGGKDFCMPLTISRLTEGGKAAKANVSIGDVILSINGISTE
SMNHLEAQNKIKACTGALSLTLQRVSAVSKEEVHKDEPQEIIKPVPITQPVASTAYTKPL
SQNSPISNKTARPFGGSSAGFGASSSPASTKVASIPSESSAFTPAAPSQPPHPPFPLKSS
LAPEPAPANSVQKSSPGRSAFTSPSASSSSSSSSSSARVTPSHPNVPQPSVYNTPINLYS
NANASEVAMGQRRGLLESQGLSEHVNGKAVVEPEIHSPALSDASKKRVIEDTEDWHPRTG
TSQSRSFRILAQITGTENEQTSENGGKNEAVDKTKPTVHTSPAAKTYSKSAAAPRNGNIA
APTFKSPAAQSKPAFQPGGLPGLQKMAAGPSFGKVSGPAAKGPDRPTPQPHPEDLNSLVQ
RAEHIPAGTRTPMCCKCNNVIRGPFLVAMGMSWHPEEFNCAHCRSSLVESGFVEEKDKVY
CVRCYEQFFAPTCAYCHQKILGEIMNALKQTWHVSCFVCTACQQPIRGNTFHMEDGQPYC
ERDYNLLFGTPCNGCQYPIDAGDRFLEALGHKWHDSCFVCVACSQSLEGQPFFSKKDKLL
CKKHAHTYNI
NT seq
1833 nt
NT seq
+upstream
nt +downstream
nt
atgagcagcaactacagtgtttccctggccggccctgctccgtggggcttcaggctgcag
gggggaaaggacttctgtatgcccctcaccatctcccggcttactgaggggggcaaagca
gccaaagccaatgtgagcattggagatgttatcctttccatcaatggcatttctactgaa
agcatgaatcaccttgaggcccagaacaagataaaagcctgcacaggtgccctcagcctc
actctccagagagtctctgctgtttctaaagaagaagtgcacaaggatgaacctcaggag
atcataaagcctgtgccgatcactcagcctgtggcaagcaccgcgtacaccaagccgcta
agtcagaacagtcctatatccaacaagacagctcggccgtttggagggagcagcgccggg
tttggtgcttcctcctccccagcttccaccaaagtcgcctccattccctccgagtcgtca
gctttcaccccagccgccccctcccaaccacctcaccctcccttcccactcaagtccagc
ctcgctccagaaccagctccggcaaattcagttcagaaaagcagccccggtcgctccgct
ttcacctccccatctgcctcttcatcatcatcttcctcctcctcttcagccagagtgaca
ccctcccaccctaatgtcccgcagccttctgtctataacacacccatcaacctgtactcc
aatgccaatgcttctgaggtggctatgggacagaggcggggccttctggagagtcagggg
ctttctgagcatgtcaatgggaaggcggttgtggagcctgagatccattcaccagctctg
agtgacgccagcaagaagcgtgtgattgaagacaccgaggactggcacccccgaacgggc
acctcacaatctcggtccttccggatcctcgcccagatcaccgggacagagaatgagcaa
acttcagaaaacggtgggaaaaatgaggcggttgacaaaaccaagcccactgtgcacacc
tcgcctgcggcgaaaacctattccaagtcagcagcagcccccaggaacggaaacatcgct
gctcctacatttaaaagtcccgcagcccagagcaaacccgccttccagcctggaggtctg
ccaggtcttcagaagatggctgcaggtccttcctttggcaaggtttctggtccggctgcc
aaaggaccggaccgccccactccacagccacacccagaggacctgaactctctggtgcag
cgggccgagcacatcccagctggaacacgcacaccaatgtgctgcaagtgcaacaacgtc
atcaggggtccattccttgtggccatgggcatgtcctggcacccagaggaattcaactgt
gctcactgccgctcctctctggtagaaagtggatttgtagaagagaaggacaaagtgtac
tgcgtgcgctgctatgagcaattctttgctccgacatgtgcctactgccaccagaagatc
ctgggggagatcatgaatgccttaaagcagacctggcatgtgtcctgcttcgtctgcaca
gcctgccaacagccaatcaggggcaacacgtttcacatggaggatggacagccatactgt
gaaagagactacaacctcctgtttggcaccccttgcaatggttgccaataccccattgat
gcaggagaccggttccttgaggctcttggacacaagtggcacgacagctgttttgtgtgt
gtggcgtgctcccaaagtctggaaggccagcctttcttctccaaaaaagacaagcttttg
tgcaagaagcatgcacacacatacaacatctaa
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